Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009450

Physical Location & Seq

Genomic Coordinates Reverse (-)

8194540 .. 8204196

Gene Structure 9657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08310.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGGAGGTCGATAAGAAATTGTCATCTGATGAGTTGGATAAGGAGTGCTCAATTCTGCTTGAGCTAGCTGAAAGTGACCCTCTTTTTGATAAAAAGAAGAAACTGCTACAAGATAATGGATTTAAACCTAAGGAACAAATATGCATAAAAAGGTCATCAGATCCTAATTGGCTCAGTACCTCCTTGACAGTAATGCTTCGGATAGCACGGATCATAAAGCTGGATGAGGTAGAGCTTTATTTTGGGGGAGAAGAACAGTTGGACTCTTATAGTCCCAGAAATGAGCTTGAGGCCCTCAATTCTATTCTTCAGCTTGTGGAAAGTTCACTCACCGATGCATGTGAAATGCAAAAGAATATCCTGCAAGACTTGTGCAATATTACTGTTGGTAAGATTTGTCAGTTTGCTGAAGAAAATAGTTTGCAGACTACAATTGTAGAAGGCCAGACTGATAAAGAAAAGCAATTGCTGCAATGGGGTGAAAACAATGGTGTCAAAACAAGGTTGCAGATAGCTTATGTCGAAGGGGCTGGTAGAGGAGCTATAGCTAGAGAAGATCTAAAAGGTGGAGACACTGCTTTGGAGATCCCTACATCCATAATAATTTCTGAGGAGCTTGTCCAGAAAACTGATATGTATCATGTATTACAAGAGTTAGAAGACACTTCCTCTGAGACTATGTTGTTGTTGTGGAGCATGAAGGAGAGACACAATACTGATTCACAATACAAGATCTACTTTGACTCACTGCCTGAGGATTTTCATACTGGATTGAGTTTTGGGATGTCCGCAATGATGTCTTTGTATGGAACCTTGCTGTTGGATGAGATAATGCAAGCAAAAGAGCATTTGCGTGCACAATATGATAAGCTGTTCCCTGCACTGTGCAATGAGCATCCTGATATCTTTCCTCCAGAGCTTTACACATGGGAACAATTCTTGTGGGCATGTGAATTGTGGTACTCAAATAGCATGAAAATCATGTTTGCTGATGGAAAATTAAGGACATGCTTGATTCCTATTGCTGGCTTTCTGAACCATTCAATATACCCACATGTAGTGAACTATGGCAGAGTAGATTCTGCAACAAATACCATAAACTTCCGTCTGTCAAGACCTTGCAGTGCTGGACAAGAATGTTGCCTTAGTTACGGAAACCTCTCCACTTCTCATCTAGTTACCTTCTATGGCTTCTTACCACAAGGATACAACCCTTATGATGTCATTCCACTAGATATCGGTTGTGCCGAAGAAGATTCTACTGAAGTCAGCTCCACATCTGAATGGACAACTCACATGGTGCGAGGTACTTGGTTCTCAAATAACTGGAATATTTTCTATTATGGCCTGCCCTCCCCGTTTTTGGACTGCCTAAGGAGAGCTCGGAATCCCATGCTGCTGACTAAGAAACTTCTCCCAGAAAACTTGGAGAATGAAATTGAAATCCTTGAAGATCTCCTCGCAATATTTAATGACATGATGGATAGCCTTGGTGACGCAGACCTTGATGACAGAAAAAACACTAGTTGGGATGTAAAGCTGGCAGTGGGCTTCAAATTTCTACAAAGAGCTTATGCCAACAGAAAGACTGCTGATGCTGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

536

Amino Acids

61.11

Weight (kDa)

4.67

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rubis-subs-bind	PF09273	24 - 110	1.7e-06	Rubisco LSMT substrate-binding
SET	PF00856	178 - 385	6.2e-06	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18850 AT2G18850
fragaria_vesca	FvH4_4g08310 FvH4_4g08310 FvH4_4g08310
malus_domestica	MD13G1255300.v1.1 MD16G1258300.v1.1 MD16G1258400.v1.1
prunus_persica	Prupe.1G086300_v2.0.a1
pyrus_communis	pycom16g22180
rosa_chinensis	RchiOBHm_Chr4g0402581
rosa_laevigata	RLG00000009066
rosa_multiflora	Rmu_co7971726.1_g000001 Rmu_sc0015071.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347290
rosa_rugosa	Rorug04G0036700.1 Rorug04G0036800
rosa_samantha	Rh4AG114400 Rh4BG106500 Rh4CG120900 Rh4DG106400
rosa_wichuraiana	Rw4G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	789
AclWI	GGATC	3 cut(s)	155, 218, 580
AcsI	RAATTY	1 cut(s)	1556
AcuI	CTGAAG	3 cut(s)	293, 429, 1284
AdeI	CACNNNGTG	1 cut(s)	1300
AfaI	GTAC	3 cut(s)	178, 962, 1309
AfiI	CCNNNNNNNGG	2 cut(s)	1025, 1363
AflIII	ACRYGT	1 cut(s)	1054
AgsI	TTSAA	4 cut(s)	1044, 1442, 1451, 1555
AhlI	ACTAGT	1 cut(s)	1523
Alw21I	GWGCWC	3 cut(s)	50, 859, 1384
Alw26I	GTCTC	3 cut(s)	564, 668, 700
Alw44I	GTGCAC	1 cut(s)	855
AlwI	GGATC	3 cut(s)	155, 218, 580
AoxI	GGCC	3 cut(s)	291, 442, 1345
ApaLI	GTGCAC	1 cut(s)	855
ApeKI	GCWGC	2 cut(s)	469, 1396
ApoI	RAATTY	1 cut(s)	1556
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	1 cut(s)	1334
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	3 cut(s)	322, 491, 1505
AsuNHI	GCTAGC	1 cut(s)	64
AxyI	CCTNAGG	3 cut(s)	129, 753, 1373
BaeGI	GKGCMC	1 cut(s)	859
BanII	GRGCYC	1 cut(s)	1384
BbsI	GAAGAC	1 cut(s)	666
Bbv12I	GWGCWC	3 cut(s)	50, 859, 1384
BbvI	GCAGC	2 cut(s)	456, 1383
BccI	CCATC	2 cut(s)	986, 1474
BciVI	GTATCC	1 cut(s)	1199
BcoDI	GTCTC	3 cut(s)	564, 668, 700
BcuI	ACTAGT	1 cut(s)	1523
BfaI	CTAG	5 cut(s)	65, 549, 1175, 1232, 1524
BfmI	CTRYAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	1199
BglII	AGATCT	3 cut(s)	556, 732, 1453
BisI	GCNGC	2 cut(s)	470, 1397
BlsI	GCNGC	2 cut(s)	471, 1398
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	811
BmsI	GCATC	3 cut(s)	325, 904, 1585
BmtI	GCTAGC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	897
BpuEI	CTTGAG	2 cut(s)	80, 308
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	1489
Bsc4I	CCNNNNNNNGG	2 cut(s)	1025, 1363
Bse1I	ACTGG	2 cut(s)	772, 1331
Bse21I	CCTNAGG	3 cut(s)	129, 753, 1373
Bse3DI	GCAATG	3 cut(s)	479, 798, 895
Bse8I	GATNNNNATC	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	1489
BseGI	GGATG	6 cut(s)	229, 593, 789, 829, 895, 1537
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	1025, 1363
BseMI	GCAATG	3 cut(s)	479, 798, 895
BseMII	CTCAG	4 cut(s)	187, 600, 663, 744
BseNI	ACTGG	2 cut(s)	772, 1331
BseRI	GAGGAG	3 cut(s)	552, 626, 1448
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	2 cut(s)	456, 1383
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	3 cut(s)	293, 444, 1347
BsiHKAI	GWGCWC	3 cut(s)	50, 859, 1384
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	1025, 1363
BsmAI	GTCTC	3 cut(s)	564, 668, 700
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	3 cut(s)	293, 444, 1347
Bsp1286I	GDGCHC	3 cut(s)	50, 859, 1384
Bsp143I	GATC	6 cut(s)	160, 210, 556, 585, 732, 1453
BspACI	CCGC	1 cut(s)	789
BspANI	GGCC	3 cut(s)	293, 444, 1347
BspCNI	CTCAG	4 cut(s)	186, 601, 664, 745
BspLI	GGNNCC	1 cut(s)	811
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	155, 218, 580
BsrDI	GCAATG	3 cut(s)	479, 798, 895
BsrI	ACTGG	2 cut(s)	772, 1331
BssECI	CCNNGG	1 cut(s)	1489
BssMI	GATC	6 cut(s)	160, 210, 556, 585, 732, 1453
BssT1I	CCWWGG	1 cut(s)	1489
Bst4CI	ACNGT	4 cut(s)	190, 258, 385, 885
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstC8I	GCNNGC	6 cut(s)	66, 837, 855, 1027, 1349, 1542
BstDEI	CTNAG	8 cut(s)	129, 173, 609, 672, 753, 1145, 1373, 1404
BstF5I	GGATG	6 cut(s)	229, 593, 789, 829, 895, 1537
BstKTI	GATC	6 cut(s)	163, 213, 559, 588, 735, 1456
BstMAI	GTCTC	3 cut(s)	564, 668, 700
BstMBI	GATC	6 cut(s)	160, 210, 556, 585, 732, 1453
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNSI	RCATGY	4 cut(s)	342, 951, 1011, 1058
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	2 cut(s)	456, 1383
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	5 cut(s)	160, 556, 585, 732, 1453
BstYI	RGATCY	5 cut(s)	160, 556, 585, 732, 1453
Bsu36I	CCTNAGG	3 cut(s)	129, 753, 1373
BsuI	GTATCC	1 cut(s)	1199
BsuRI	GGCC	3 cut(s)	293, 444, 1347
BtsCI	GGATG	6 cut(s)	229, 593, 789, 829, 895, 1537
BtsI	GCAGTG	4 cut(s)	573, 746, 1129, 1551
BtsIMutI	CAGTG	5 cut(s)	573, 746, 881, 1129, 1551
Cac8I	GCNNGC	6 cut(s)	66, 837, 855, 1027, 1349, 1542
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	1505
Csp6I	GTAC	3 cut(s)	177, 961, 1308
CspCI	CAANNNNNGTGG	2 cut(s)	923, 958
CviQI	GTAC	3 cut(s)	177, 961, 1308
DdeI	CTNAG	8 cut(s)	129, 173, 609, 672, 753, 1145, 1373, 1404
DpnI	GATC	6 cut(s)	162, 212, 558, 587, 734, 1455
DpnII	GATC	6 cut(s)	160, 210, 556, 585, 732, 1453
DraI	TTTAAA	1 cut(s)	124
DraIII	CACNNNGTG	1 cut(s)	1300
Ecl136II	GAGCTC	1 cut(s)	1382
Eco130I	CCWWGG	1 cut(s)	1489
Eco24I	GRGCYC	1 cut(s)	1384
Eco32I	GATATC	2 cut(s)	904, 1237
Eco53kI	GAGCTC	1 cut(s)	1382
Eco57I	CTGAAG	3 cut(s)	293, 429, 1284
Eco81I	CCTNAGG	3 cut(s)	129, 753, 1373
EcoICRI	GAGCTC	1 cut(s)	1382
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRV	GATATC	2 cut(s)	904, 1237
EcoT14I	CCWWGG	1 cut(s)	1489
EcoT22I	ATGCAT	2 cut(s)	146, 340
EcoT38I	GRGCYC	1 cut(s)	1384
ErhI	CCWWGG	1 cut(s)	1489
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	470, 1397
FokI	GGATG	6 cut(s)	236, 580, 796, 836, 882, 1544
FriOI	GRGCYC	1 cut(s)	1384
Fsp4HI	GCNGC	2 cut(s)	470, 1397
FspBI	CTAG	5 cut(s)	65, 549, 1175, 1232, 1524
GluI	GCNGC	2 cut(s)	470, 1397
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	3 cut(s)	293, 444, 1347
HgaI	GACGC	1 cut(s)	1505
HinfI	GANTC	7 cut(s)	263, 719, 743, 1015, 1079, 1256, 1387
HphI	GGTGA	3 cut(s)	322, 491, 1505
Hpy166II	GTNNAC	3 cut(s)	326, 857, 1063
Hpy188I	TCNGA	8 cut(s)	28, 160, 201, 610, 673, 1035, 1282, 1386
Hpy188III	TCNNGA	4 cut(s)	622, 899, 914, 1113
Hpy8I	GTNNAC	3 cut(s)	326, 857, 1063
HpyAV	CCTTC	4 cut(s)	434, 518, 694, 1192
HpyCH4III	ACNGT	4 cut(s)	190, 258, 385, 885
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	8 cut(s)	129, 173, 609, 672, 753, 1145, 1373, 1404
Kzo9I	GATC	6 cut(s)	160, 210, 556, 585, 732, 1453
LmnI	GCTCC	4 cut(s)	539, 613, 693, 1277
Lsp1109I	GCAGC	2 cut(s)	456, 1383
LweI	GCATC	3 cut(s)	325, 904, 1585
MaeI	CTAG	5 cut(s)	65, 549, 1175, 1232, 1524
MaeIII	GTNAC	4 cut(s)	74, 1148, 1177, 1493
MalI	GATC	6 cut(s)	162, 212, 558, 587, 734, 1455
MboI	GATC	6 cut(s)	160, 210, 556, 585, 732, 1453
MboII	GAAGA	9 cut(s)	109, 263, 299, 422, 566, 671, 1262, 1265, 1463
MfeI	CAATTG	2 cut(s)	432, 464
MflI	RGATCY	5 cut(s)	160, 556, 585, 732, 1453
MhlI	GDGCHC	3 cut(s)	50, 859, 1384
MlyI	GAGTC	2 cut(s)	257, 737
MmeI	TCCRAC	3 cut(s)	15, 240, 801
Mph1103I	ATGCAT	2 cut(s)	146, 340
MroXI	GAANNNNTTC	1 cut(s)	1334
MseI	TTAA	4 cut(s)	123, 1001, 1470, 1606
MslI	CAYNNNNRTG	2 cut(s)	852, 1282
MunI	CAATTG	2 cut(s)	432, 464
MwoI	GCNNNNNNNGC	1 cut(s)	469
NdeII	GATC	6 cut(s)	160, 210, 556, 585, 732, 1453
NheI	GCTAGC	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	811
NmuCI	GTSAC	2 cut(s)	74, 1493
NsiI	ATGCAT	2 cut(s)	146, 340
NspI	RCATGY	4 cut(s)	342, 951, 1011, 1058
PciI	ACATGT	1 cut(s)	1054
PcsI	WCGNNNNNNNCGW	1 cut(s)	1245
PdmI	GAANNNNTTC	1 cut(s)	1334
PfeI	GAWTC	5 cut(s)	719, 1015, 1079, 1256, 1387
PkrI	GCNGC	2 cut(s)	471, 1398
PleI	GAGTC	2 cut(s)	257, 737
PpsI	GAGTC	2 cut(s)	257, 737
PscI	ACATGT	1 cut(s)	1054
Psp124BI	GAGCTC	1 cut(s)	1384
PspN4I	GGNNCC	1 cut(s)	811
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	5 cut(s)	160, 556, 585, 732, 1453
RsaI	GTAC	3 cut(s)	178, 962, 1309
RsaNI	GTAC	3 cut(s)	177, 961, 1308
RseI	CAYNNNNRTG	2 cut(s)	852, 1282
SacI	GAGCTC	1 cut(s)	1384
SaqAI	TTAA	4 cut(s)	123, 1001, 1470, 1606
SatI	GCNGC	2 cut(s)	470, 1397
Sau3AI	GATC	6 cut(s)	160, 210, 556, 585, 732, 1453
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	2 cut(s)	257, 737
SduI	GDGCHC	3 cut(s)	50, 859, 1384
SfaNI	GCATC	3 cut(s)	325, 904, 1585
SfcI	CTRYAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	2 cut(s)	852, 1282
SmlI	CTYRAG	2 cut(s)	59, 287
SmoI	CTYRAG	2 cut(s)	59, 287
SpeI	ACTAGT	1 cut(s)	1523
SsiI	CCGC	1 cut(s)	789
SspI	AATATT	3 cut(s)	379, 1333, 1467
SspMI	CTAG	5 cut(s)	65, 549, 1175, 1232, 1524
SstI	GAGCTC	1 cut(s)	1384
StyI	CCWWGG	1 cut(s)	1489
TaaI	ACNGT	4 cut(s)	190, 258, 385, 885
TaqI	TCGA	2 cut(s)	9, 522
TfiI	GAWTC	5 cut(s)	719, 1015, 1079, 1256, 1387
Tru1I	TTAA	4 cut(s)	123, 1001, 1470, 1606
Tru9I	TTAA	4 cut(s)	123, 1001, 1470, 1606
TscAI	CASTG	5 cut(s)	580, 753, 888, 1129, 1551
TseFI	GTSAC	2 cut(s)	74, 1493
TseI	GCWGC	2 cut(s)	469, 1396
Tsp45I	GTSAC	2 cut(s)	74, 1493
TspDTI	ATGAA	4 cut(s)	713, 752, 989, 1449
TspGWI	ACGGA	3 cut(s)	223, 1094, 1167
TspRI	CASTG	5 cut(s)	580, 753, 888, 1129, 1551
VneI	GTGCAC	1 cut(s)	855
XapI	RAATTY	1 cut(s)	1556
XceI	RCATGY	4 cut(s)	342, 951, 1011, 1058
XmnI	GAANNNNTTC	1 cut(s)	1334
XspI	CTAG	5 cut(s)	65, 549, 1175, 1232, 1524
Zsp2I	ATGCAT	2 cut(s)	146, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.