Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009450

Physical Location & Seq

Genomic Coordinates Reverse (-)

30394273 .. 30396644

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1258300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGGCCTCTGATGGTCAGGGCTGAAGTATTTGTTCTAGTTAGAGGTGCAGAACATGGAGATGGCCAAATCATGTGTAGGGAGAAACCTTGGGAGGGTTCTTTAAAGACAGGAAGCGTTGCTTTATTGAGCACCCAGTCAATACCTTTCCAGCTGCTATTGAAATATTTGATCTCTCATTTTTGTATACTGAAGAATCATTTGCATGCTGAATATGATAAGCTCTTCCCTGCACTGTGCAATGAGCATCCTGATATCTTTGCACCGGAGCTTTACAAATGGGAGCAATTCTTGTGGGCATGTGAACTGTGGTACTCAAATAGCATGAAAATCAAGTTTCCTGATGGAAAGCTAAGAACATGCTTGATTCCAATTGCTGGCTTTCTGAACCATTCACTATACCCACATATAGTGAACTATGGCAGAATAGATGCTGCAGCAAATACCTTGAAATTCTGTCTATCAAGATCATGCAGTGCAGGACAAGAATGCTGTCTTAGTTATGGAGATTTCTCCAGTTCTCATCTAGTTACCTTCTACGGCTTTATACCACAAGGAGAGAACCCATACGATGTCATTCAACTAGATTTTGGTTCTGCCCAAGATGAATTTACTGATGGCAGCTCCATATCCAACTGGTCCACTCACATGGTGCGGGGTACTTGGTTCTCAGAGAATCGCAATATTTTCTACTACGGCCTGCCCTCCCCATTGTTGGACTTCCTAAGGAGTGCTCATAGTCCCGTGCTGCATACTAAGGCCCTTCTGCCGGAAAATTTGAAGATTGAAATTGAAATTCTTGAAAATCTGCTCTCTATCTGTAATGATATGATGGATGAACTTGGTGATCCCGACCTTGATGACAGAAAAAGCACTAATTGGGATGTAAAGCTGGCAGTGGAGTTCAAGGATATACAGAGAGGTATCGTCTCTTCAGTTTTAACTTCGTGTCACTGTGGCCTCAAACGGGTGAAACACGAATTGTCTGAAATGGACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.77

Weight (kDa)

5.51

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18850 AT2G18850
fragaria_vesca	FvH4_4g08310 FvH4_4g08310 FvH4_4g08310
malus_domestica	MD13G1255300.v1.1 MD16G1258300.v1.1 MD16G1258400.v1.1
prunus_persica	Prupe.1G086300_v2.0.a1
pyrus_communis	pycom16g22180
rosa_chinensis	RchiOBHm_Chr4g0402581
rosa_laevigata	RLG00000009066
rosa_multiflora	Rmu_co7971726.1_g000001 Rmu_sc0015071.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347290
rosa_rugosa	Rorug04G0036700.1 Rorug04G0036800
rosa_samantha	Rh4AG114400 Rh4BG106500 Rh4CG120900 Rh4DG106400
rosa_wichuraiana	Rw4G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	187
AciI	CCGC	1 cut(s)	655
AclWI	GGATC	1 cut(s)	842
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	4 cut(s)	452, 608, 775, 795
AcuI	CTGAAG	3 cut(s)	45, 212, 918
AdeI	CACNNNGTG	1 cut(s)	652
AfaI	GTAC	2 cut(s)	314, 661
AfiI	CCNNNNNNNGG	5 cut(s)	95, 377, 715, 769, 967
AgsI	TTSAA	8 cut(s)	163, 451, 581, 781, 788, 794, 803, 907
AluBI	AGCT	6 cut(s)	154, 223, 271, 352, 624, 892
AluI	AGCT	6 cut(s)	154, 223, 271, 352, 624, 892
Alw21I	GWGCWC	2 cut(s)	134, 736
Alw26I	GTCTC	1 cut(s)	934
AlwI	GGATC	1 cut(s)	842
AoxI	GGCC	5 cut(s)	5, 64, 697, 759, 958
ApeKI	GCWGC	5 cut(s)	154, 434, 437, 621, 748
ApoI	RAATTY	4 cut(s)	452, 608, 775, 795
AspS9I	GGNCC	3 cut(s)	5, 639, 760
AsuHPI	GGTGA	2 cut(s)	857, 982
AvaII	GGWCC	1 cut(s)	639
AxyI	CCTNAGG	1 cut(s)	725
BalI	TGGCCA	1 cut(s)	66
BarI	GAAGNNNNNNTAC	2 cut(s)	916, 948
Bbv12I	GWGCWC	2 cut(s)	134, 736
BbvI	GCAGC	5 cut(s)	141, 421, 449, 633, 735
BccI	CCATC	5 cut(s)	7, 56, 338, 611, 826
BceAI	ACGGC	2 cut(s)	556, 712
BcoDI	GTCTC	1 cut(s)	934
BfaI	CTAG	3 cut(s)	38, 527, 584
BfmI	CTRYAG	1 cut(s)	435
BisI	GCNGC	5 cut(s)	155, 435, 438, 622, 749
BlsI	GCNGC	5 cut(s)	156, 436, 439, 623, 750
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	3 cut(s)	5, 639, 760
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	256, 421
BmuI	ACTGGG	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 377, 715, 769, 967
Bse1I	ACTGG	3 cut(s)	136, 516, 641
Bse21I	CCTNAGG	1 cut(s)	725
Bse3DI	GCAATG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	3 cut(s)	247, 841, 889
BseLI	CCNNNNNNNGG	5 cut(s)	95, 377, 715, 769, 967
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	3 cut(s)	136, 516, 641
BseXI	GCAGC	5 cut(s)	141, 421, 449, 633, 735
BsgI	GTGCAG	3 cut(s)	69, 216, 498
BshFI	GGCC	5 cut(s)	7, 66, 699, 761, 960
BsiHKAI	GWGCWC	2 cut(s)	134, 736
BsiSI	CCGG	2 cut(s)	266, 770
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	5 cut(s)	95, 377, 715, 769, 967
BsmAI	GTCTC	1 cut(s)	934
BsmBI	CGTCTC	1 cut(s)	934
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	5 cut(s)	7, 66, 699, 761, 960
Bsp1286I	GDGCHC	2 cut(s)	134, 736
Bsp143I	GATC	3 cut(s)	171, 467, 847
BspACI	CCGC	1 cut(s)	655
BspANI	GGCC	5 cut(s)	7, 66, 699, 761, 960
BspCNI	CTCAG	1 cut(s)	683
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	1 cut(s)	842
BspQI	GCTCTTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	136, 516, 641
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	3 cut(s)	171, 467, 847
BssNAI	GTATAC	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	89
Bst1107I	GTATAC	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	237, 309, 956
Bst6I	CTCTTC	2 cut(s)	230, 937
BstC8I	GCNNGC	4 cut(s)	207, 379, 701, 894
BstDEI	CTNAG	5 cut(s)	353, 497, 670, 725, 756
BstF5I	GGATG	3 cut(s)	247, 841, 889
BstKTI	GATC	3 cut(s)	174, 470, 850
BstMAI	GTCTC	1 cut(s)	934
BstMBI	GATC	3 cut(s)	171, 467, 847
BstNSI	RCATGY	3 cut(s)	209, 303, 363
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	5 cut(s)	141, 421, 449, 633, 735
BstXI	CCANNNNNNTGG	1 cut(s)	649
BstZ17I	GTATAC	1 cut(s)	188
Bsu36I	CCTNAGG	1 cut(s)	725
BsuRI	GGCC	5 cut(s)	7, 66, 699, 761, 960
BtsCI	GGATG	3 cut(s)	247, 841, 889
BtsI	GCAGTG	2 cut(s)	481, 903
BtsIMutI	CAGTG	4 cut(s)	233, 481, 903, 952
Cac8I	GCNNGC	4 cut(s)	207, 379, 701, 894
Cfr13I	GGNCC	3 cut(s)	5, 639, 760
Csp6I	GTAC	2 cut(s)	313, 660
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	8 cut(s)	56, 73, 206, 300, 325, 360, 471, 649
CviQI	GTAC	2 cut(s)	313, 660
DdeI	CTNAG	5 cut(s)	353, 497, 670, 725, 756
DpnI	GATC	3 cut(s)	173, 469, 849
DpnII	GATC	3 cut(s)	171, 467, 847
DraI	TTTAAA	1 cut(s)	105
DraIII	CACNNNGTG	1 cut(s)	652
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	230, 937
EarI	CTCTTC	2 cut(s)	230, 937
Eco130I	CCWWGG	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	639
Eco57I	CTGAAG	3 cut(s)	45, 212, 918
Eco81I	CCTNAGG	1 cut(s)	725
EcoO109I	RGGNCCY	2 cut(s)	5, 760
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
Esp3I	CGTCTC	1 cut(s)	934
FaeI	CATG	8 cut(s)	59, 76, 209, 303, 328, 363, 474, 652
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	8 cut(s)	55, 72, 205, 299, 324, 359, 470, 648
FauI	CCCGC	1 cut(s)	648
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	5 cut(s)	155, 435, 438, 622, 749
FokI	GGATG	3 cut(s)	234, 848, 896
Fsp4HI	GCNGC	5 cut(s)	155, 435, 438, 622, 749
FspBI	CTAG	3 cut(s)	38, 527, 584
GluI	GCNGC	5 cut(s)	155, 435, 438, 622, 749
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	5 cut(s)	7, 66, 699, 761, 960
HapII	CCGG	2 cut(s)	266, 770
Hin1II	CATG	8 cut(s)	59, 76, 209, 303, 328, 363, 474, 652
HinfI	GANTC	3 cut(s)	196, 367, 676
HpaII	CCGG	2 cut(s)	266, 770
HphI	GGTGA	2 cut(s)	857, 982
Hpy166II	GTNNAC	4 cut(s)	188, 305, 415, 642
Hpy188I	TCNGA	4 cut(s)	12, 387, 673, 988
Hpy188III	TCNNGA	5 cut(s)	251, 341, 465, 800, 851
Hpy8I	GTNNAC	4 cut(s)	188, 305, 415, 642
HpyAV	CCTTC	2 cut(s)	544, 773
HpyCH4III	ACNGT	3 cut(s)	237, 309, 956
HpyCH4V	TGCA	9 cut(s)	50, 205, 233, 240, 263, 437, 474, 479, 751
HpyF3I	CTNAG	5 cut(s)	353, 497, 670, 725, 756
Hsp92II	CATG	8 cut(s)	59, 76, 209, 303, 328, 363, 474, 652
Kzo9I	GATC	3 cut(s)	171, 467, 847
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	3 cut(s)	268, 283, 629
Lsp1109I	GCAGC	5 cut(s)	141, 421, 449, 633, 735
LweI	GCATC	2 cut(s)	256, 421
MaeI	CTAG	3 cut(s)	38, 527, 584
MaeIII	GTNAC	2 cut(s)	529, 950
MalI	GATC	3 cut(s)	173, 469, 849
MboI	GATC	3 cut(s)	171, 467, 847
MboII	GAAGA	4 cut(s)	205, 217, 793, 924
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	134, 736
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	9 cut(s)	287, 372, 452, 608, 775, 789, 795, 877, 980
MluNI	TGGCCA	1 cut(s)	66
MmeI	TCCRAC	2 cut(s)	657, 696
MnlI	CCTC	6 cut(s)	18, 38, 88, 715, 914, 971
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	104, 941
MslI	CAYNNNNRTG	3 cut(s)	60, 204, 647
Msp20I	TGGCCA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	2 cut(s)	266, 770
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	494
NdeII	GATC	3 cut(s)	171, 467, 847
NlaIII	CATG	8 cut(s)	59, 76, 209, 303, 328, 363, 474, 652
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	950
NspI	RCATGY	3 cut(s)	209, 303, 363
PaeI	GCATGC	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	230
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	196, 367, 676
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	156, 436, 439, 623, 750
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	5, 639, 760
PstI	CTGCAG	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	314, 661
RsaNI	GTAC	2 cut(s)	313, 660
RseI	CAYNNNNRTG	3 cut(s)	60, 204, 647
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	104, 941
SatI	GCNGC	5 cut(s)	155, 435, 438, 622, 749
Sau3AI	GATC	3 cut(s)	171, 467, 847
Sau96I	GGNCC	3 cut(s)	5, 639, 760
SduI	GDGCHC	2 cut(s)	134, 736
SfaNI	GCATC	2 cut(s)	256, 421
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	639
SmiMI	CAYNNNNRTG	3 cut(s)	60, 204, 647
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	9 cut(s)	287, 372, 452, 608, 775, 789, 795, 877, 980
SsiI	CCGC	1 cut(s)	655
SspI	AATATT	2 cut(s)	167, 685
SspMI	CTAG	3 cut(s)	38, 527, 584
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	3 cut(s)	237, 309, 956
TasI	AATT	9 cut(s)	287, 372, 452, 608, 775, 789, 795, 877, 980
TfiI	GAWTC	3 cut(s)	196, 367, 676
Tru1I	TTAA	2 cut(s)	104, 941
Tru9I	TTAA	2 cut(s)	104, 941
TscAI	CASTG	4 cut(s)	240, 481, 903, 959
TseFI	GTSAC	1 cut(s)	950
TseI	GCWGC	5 cut(s)	154, 434, 437, 621, 748
Tsp45I	GTSAC	1 cut(s)	950
TspDTI	ATGAA	3 cut(s)	341, 621, 852
TspRI	CASTG	4 cut(s)	240, 481, 903, 959
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	639
XapI	RAATTY	4 cut(s)	452, 608, 775, 795
XceI	RCATGY	3 cut(s)	209, 303, 363
XmiI	GTMKAC	1 cut(s)	187
XspI	CTAG	3 cut(s)	38, 527, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.