Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009450

Physical Location & Seq

Genomic Coordinates Reverse (-)

30396647 .. 30402112

Gene Structure 5466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1258400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGTTGGATAAAGACTGCTCAATTGTCCTTGAGCTATCTGAAAGTGACCCTCTTTTTGATACAAAGAAGAAATTGCTACAAGATAAGGGATTTAATACAAGGCAACAAATCAATGTTAAAAGGTCTTCAGATCCTAATTGGCTCAGTACCTCCGTGGAAGTAATGCTTCAGATAGCAACAATCATAAAATCAACTGAGGCAGAGCTTTATTTTGGGCAAGATCAACCAATGGAATCATATGGTCCCAGGAATGAACTTGAGGCTCTCAATTCAATCCTTCAACTTGTTGAAGCCTCATTCTCTGGTGTTTGTCAAATGCAAAAGAATGTCCTACAAGAACTACACAATGTTATTGTTGATATGATTTGTCAGTCTTCTGACAAGCACCGTCCAAAGACTACAATTGTAGAAGGCTACAACTCTGCTAAAGAAAAGCAATTGTTACAATGGGGTGAAAACAATGGTGTCAAAACAAGGTTGCAGATAGCTTATGTTGAAGGGGCTGGCAGAGGAGCCATAGCTAAGGAGGATCTGAAAGTCGGTGATACTGCTCTAGAGATCCCAACATCTTTAATAATCTCCGAGGAGCTTGTGCAAGCTGATATGTATCATGCATTAGAGAAGTTTGAAGGCATTACCCCTGAGACGATGTTGTTGTTGTGGAGCATGAAGGAGAGGCACAATTGTAATTCAAAATACAAGATGTACTTTGACACACTTCCTGAAGAATTTCATACTGGGTTGAGTTTTGGAGTCAAGGCGATGATGGCTTTGGGTGGAACCATGCTGTTGGATGAGATAACAGAAGCAAAAGAGTTCTCTGCAAGATACAATGCTTCCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

283

Amino Acids

31.79

Weight (kDa)

5.06

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18850 AT2G18850
fragaria_vesca	FvH4_4g08310 FvH4_4g08310 FvH4_4g08310
malus_domestica	MD13G1255300.v1.1 MD16G1258300.v1.1 MD16G1258400.v1.1
prunus_persica	Prupe.1G086300_v2.0.a1
pyrus_communis	pycom16g22180
rosa_chinensis	RchiOBHm_Chr4g0402581
rosa_laevigata	RLG00000009066
rosa_multiflora	Rmu_co7971726.1_g000001 Rmu_sc0015071.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347290
rosa_rugosa	Rorug04G0036700.1 Rorug04G0036800
rosa_samantha	Rh4AG114400 Rh4BG106500 Rh4CG120900 Rh4DG106400
rosa_wichuraiana	Rw4G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	128, 540, 556
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	3 cut(s)	114, 155, 747
AfaI	GTAC	2 cut(s)	151, 710
AgsI	TTSAA	6 cut(s)	276, 284, 293, 500, 632, 696
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	6 cut(s)	37, 208, 491, 524, 592, 602
AluI	AGCT	6 cut(s)	37, 208, 491, 524, 592, 602
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	3 cut(s)	128, 540, 556
ApoI	RAATTY	1 cut(s)	731
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	732
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	467, 557
AvaII	GGWCC	1 cut(s)	245
BbsI	GAAGAC	2 cut(s)	120, 369
BccI	CCATC	1 cut(s)	763
BciT130I	CCWGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	1 cut(s)	557
Bme1390I	CCNGG	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	3 cut(s)	247, 517, 784
BmrFI	CCNGG	1 cut(s)	250
BmrI	ACTGGG	1 cut(s)	750
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	2 cut(s)	120, 369
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	2 cut(s)	53, 281
BsaBI	GATNNNNATC	1 cut(s)	609
BsaJI	CCNNGG	3 cut(s)	156, 248, 585
Bse1I	ACTGG	1 cut(s)	745
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	3 cut(s)	156, 248, 585
BseGI	GGATG	1 cut(s)	802
BseJI	GATNNNNATC	1 cut(s)	609
BseMII	CTCAG	3 cut(s)	160, 189, 636
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	2 cut(s)	528, 602
BslFI	GGGAC	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	641
BsmBI	CGTCTC	1 cut(s)	641
BsmFI	GGGAC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	133, 223, 532, 561
BspCNI	CTCAG	3 cut(s)	159, 190, 637
BspLI	GGNNCC	3 cut(s)	247, 517, 784
BspPI	GGATC	3 cut(s)	128, 540, 556
BsrI	ACTGG	1 cut(s)	745
BssECI	CCNNGG	3 cut(s)	156, 248, 585
BssMI	GATC	4 cut(s)	133, 223, 532, 561
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	508, 600
BstDEI	CTNAG	4 cut(s)	146, 198, 525, 645
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	802
BstKTI	GATC	4 cut(s)	136, 226, 535, 564
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	4 cut(s)	133, 223, 532, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstV2I	GAAGAC	2 cut(s)	120, 369
BstX2I	RGATCY	3 cut(s)	133, 532, 561
BstXI	CCANNNNNNTGG	1 cut(s)	793
BstYI	RGATCY	3 cut(s)	133, 532, 561
BtgI	CCRYGG	1 cut(s)	156
BtgZI	GCGATG	1 cut(s)	779
BtsCI	GGATG	1 cut(s)	802
Cac8I	GCNNGC	2 cut(s)	508, 600
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	150, 709
CviAII	CATG	3 cut(s)	614, 670, 787
CviQI	GTAC	2 cut(s)	150, 709
DdeI	CTNAG	4 cut(s)	146, 198, 525, 645
DpnI	GATC	4 cut(s)	135, 225, 534, 563
DpnII	GATC	4 cut(s)	133, 223, 532, 561
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	3 cut(s)	114, 155, 747
EcoRII	CCWGG	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	641
FaeI	CATG	3 cut(s)	617, 673, 790
FalI	AAGNNNNNCTT	4 cut(s)	153, 185, 695, 727
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	3 cut(s)	613, 669, 786
FauNDI	CATATG	1 cut(s)	241
FokI	GGATG	1 cut(s)	809
FspBI	CTAG	1 cut(s)	557
Hin1II	CATG	3 cut(s)	617, 673, 790
HinfI	GANTC	2 cut(s)	236, 756
HphI	GGTGA	2 cut(s)	467, 557
Hpy188I	TCNGA	6 cut(s)	43, 133, 174, 382, 537, 586
Hpy188III	TCNNGA	3 cut(s)	557, 725, 843
HpyAV	CCTTC	5 cut(s)	290, 407, 494, 626, 667
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	5 cut(s)	322, 484, 598, 617, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	4 cut(s)	146, 198, 525, 645
Hsp92II	CATG	3 cut(s)	617, 673, 790
Kzo9I	GATC	4 cut(s)	133, 223, 532, 561
LmnI	GCTCC	3 cut(s)	515, 589, 666
LpnPI	CCDG	7 cut(s)	235, 262, 291, 492, 657, 726, 738
MaeI	CTAG	1 cut(s)	557
MaeIII	GTNAC	2 cut(s)	47, 444
MalI	GATC	4 cut(s)	135, 225, 534, 563
MboI	GATC	4 cut(s)	133, 223, 532, 561
MboII	GAAGA	4 cut(s)	82, 120, 369, 740
MfeI	CAATTG	4 cut(s)	24, 405, 440, 685
MflI	RGATCY	3 cut(s)	133, 532, 561
MluCI	AATT	9 cut(s)	24, 74, 139, 271, 405, 440, 685, 691, 731
MlyI	GAGTC	1 cut(s)	765
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	9 cut(s)	63, 163, 193, 256, 307, 506, 523, 580, 672
Mph1103I	ATGCAT	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	3 cut(s)	96, 120, 575
MspR9I	CCNGG	1 cut(s)	250
MunI	CAATTG	4 cut(s)	24, 405, 440, 685
MvaI	CCWGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	770
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	4 cut(s)	133, 223, 532, 561
NlaIII	CATG	3 cut(s)	617, 673, 790
NlaIV	GGNNCC	3 cut(s)	247, 517, 784
NmuCI	GTSAC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	1 cut(s)	236
PleI	GAGTC	1 cut(s)	764
PpsI	GAGTC	1 cut(s)	764
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	3 cut(s)	247, 517, 784
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	3 cut(s)	133, 532, 561
RsaI	GTAC	2 cut(s)	151, 710
RsaNI	GTAC	2 cut(s)	150, 709
SaqAI	TTAA	3 cut(s)	96, 120, 575
Sau3AI	GATC	4 cut(s)	133, 223, 532, 561
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	765
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	9 cut(s)	39, 128, 155, 210, 482, 493, 526, 594, 604
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	32, 260
SmoI	CTYRAG	2 cut(s)	32, 260
Sse9I	AATT	9 cut(s)	24, 74, 139, 271, 405, 440, 685, 691, 731
SspMI	CTAG	1 cut(s)	557
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	392
TasI	AATT	9 cut(s)	24, 74, 139, 271, 405, 440, 685, 691, 731
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	3 cut(s)	96, 120, 575
Tru9I	TTAA	3 cut(s)	96, 120, 575
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	270, 686, 725
TspGWI	ACGGA	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	731
XbaI	TCTAGA	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	1 cut(s)	557
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.