Rh4AG114400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009450
Physical Location & Seq
Reverse (-)
24712278 .. 24720339
8062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG114400.1

Sequence Viewer

Length: 1461 bp
ATGCTTCAAATAGCACGGATCATAAAACTTGATGAGGTAGAGCTTTATTTTGGGGGAGAAGAACAGTTGGACTCCTATAGTCCCAGAAATGAGCTTGAGGCCCTCAATTCTATTCTTCAGCTTGTGGAAAGTTCACTCTCCGATGCATGTGAAATAACAAAGAATGTCCTGCAAGACTTGCGCAATCTTACCATTGATAAGATTTGTGAGTTTGCTGAAGAAAACAGTTTGAAGACTACAATTGTAGAAGGCCAGAACTCTGATAAAGAAAAGCAATTGCTGCAATGGGGTGAAAACAATGGTGTCAAGACAAGGTTGCAGATAGCTTATGTCGAAGGGGCTGGTAGAGGAGCTATAGCTAGAGAAGATCTAAAAGTTGGAGACACTGCTTTGGAGATCCCGACATCCTTAATAATTTCTGAGGAGCTTGTCCAGAAAACTGATATGTATCATGTATTAGAGAAGTTGGAAGACACTTCCTCTGAGACTATGTTATTGTTGTGGAGCATGAAGGAGAGGCATAATACTGATTCACAATACAAGATCTACTTCGATACACTGCCAGAGGATTTTCATACCGGATTGAGTTTTGGAATTTCGGCAGTGATGTCTTTGTATGGAACCTTGCTGTTGGATGAGATAATGCAAGCAAAAGAGCATTTGCGTGCTCAATATGATAAGCTTTTCCCTGCACTGTGCAATGAGCATCCTGATATCTTTCCCCCAGAGCTTTACACGTGGGAGCAATTCTTGTGGGCGTGTGAATTGTGGTACTCAAATAGCATGAAAATCATGTTTGCTGATGGAAAATTAAGGACATGCTTGATTCCTATTGCTGGCTTTTTGAACCATTCGATATACCCACATGTAGTGAATTATGGCAGAGTAGATTCTGCAACAAATACCATCAAATTCCGTCTGTCAAGACCTTGCAGTGCTGGACAAGAATGTTGCCTTAGTTATGGAAACCTCTCCACTTCTCATCTAGTTACCTTTTATGGCTTCCTACCACAAGGATACAACCCTTATGATGTCATTCCACTAGATATTGGTGGTGCCGATGACGATTCTACTGAAGGCAGCTCCACATCTGAATGGACAACTCACATGGTGCGAGGTACTTGGTTCTCAGAGAACTGGAATATTTTCTATTATGGCCTGCCCTTCCCGTTTTTGGACTGTCTAAGGAGAGCTCGGAATCCCATGCTGCTGACTAAGACCCTTCTGCCAGAAAACTTGGAGAATGAAATTGAAATCCTCGAAGATCTTCTCGCAATCTTCAATGACATGATGGATAGCCTTGGTGACGCAGACCTCGATGACAGAAAAAACACTAGTTGGGATGTAAAGCTGGCAGTGGACTTCAAATTTCTACAAAGAGGCATTGTCTCTTCGATTTTAACGTCCTGCCATAAAGGACTCGATTTGGTGAAACACGAACTGTCTAAAATGCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Rubis-subs-bind SET

Protein Analysis

486

Amino Acids

55.37

Weight (kDa)

4.7

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 115 - 322 3.2e-06 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 1055
AclWI GGATC 2 cut(s) 26, 391
AcsI RAATTY 3 cut(s) 594, 911, 1367
AcuI CTGAAG 3 cut(s) 101, 237, 1095
AcvI CACGTG 1 cut(s) 738
AdeI CACNNNGTG 1 cut(s) 1111
AfaI GTAC 2 cut(s) 773, 1120
AfiI CCNNNNNNNGG 2 cut(s) 836, 1174
AflIII ACRYGT 2 cut(s) 735, 865
AgsI TTSAA 6 cut(s) 8, 232, 847, 1253, 1282, 1366
AhlI ACTAGT 1 cut(s) 1334
Alw21I GWGCWC 2 cut(s) 670, 1195
Alw26I GTCTC 3 cut(s) 375, 479, 1393
AlwI GGATC 2 cut(s) 26, 391
AoxI GGCC 3 cut(s) 99, 250, 1156
ApeKI GCWGC 3 cut(s) 280, 1080, 1207
ApoI RAATTY 3 cut(s) 594, 911, 1367
Asp700I GAANNNNTTC 2 cut(s) 1145, 1266
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 3 cut(s) 302, 1316, 1441
BanI GGYRCC 1 cut(s) 1055
BanII GRGCYC 1 cut(s) 1195
BbrPI CACGTG 1 cut(s) 738
BbsI GAAGAC 2 cut(s) 239, 477
Bbv12I GWGCWC 2 cut(s) 670, 1195
BbvI GCAGC 3 cut(s) 267, 1092, 1194
BccI CCATC 3 cut(s) 797, 914, 1285
BciVI GTATCC 1 cut(s) 1010
BcoDI GTCTC 3 cut(s) 375, 479, 1393
BcuI ACTAGT 1 cut(s) 1334
BfaI CTAG 4 cut(s) 360, 986, 1043, 1335
BfmI CTRYAG 2 cut(s) 76, 354
BfuI GTATCC 1 cut(s) 1010
BglII AGATCT 3 cut(s) 367, 543, 1264
BisI GCNGC 3 cut(s) 281, 1081, 1208
BlsI GCNGC 3 cut(s) 282, 1082, 1209
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 2 cut(s) 622, 1057
BmsI GCATC 2 cut(s) 133, 715
BpiI GAAGAC 2 cut(s) 239, 477
BpuEI CTTGAG 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 738
BsaBI GATNNNNATC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 1300
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 2 cut(s) 836, 1174
Bse1I ACTGG 1 cut(s) 1142
Bse3DI GCAATG 2 cut(s) 290, 706
Bse8I GATNNNNATC 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 1300
BseGI GGATG 4 cut(s) 404, 640, 706, 1348
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 836, 1174
BseMI GCAATG 2 cut(s) 290, 706
BseMII CTCAG 3 cut(s) 411, 474, 1143
BseNI ACTGG 1 cut(s) 1142
BseRI GAGGAG 2 cut(s) 363, 437
BseXI GCAGC 3 cut(s) 267, 1092, 1194
BsgI GTGCAG 1 cut(s) 675
BshFI GGCC 3 cut(s) 101, 252, 1158
BshNI GGYRCC 1 cut(s) 1055
BsiHKAI GWGCWC 2 cut(s) 670, 1195
BsiSI CCGG 1 cut(s) 579
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 836, 1174
BsmAI GTCTC 3 cut(s) 375, 479, 1393
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 3 cut(s) 101, 252, 1158
Bsp1286I GDGCHC 2 cut(s) 670, 1195
Bsp143I GATC 5 cut(s) 18, 367, 396, 543, 1264
BspANI GGCC 3 cut(s) 101, 252, 1158
BspCNI CTCAG 3 cut(s) 412, 475, 1142
BspLI GGNNCC 2 cut(s) 622, 1057
BspPI GGATC 2 cut(s) 26, 391
BspT107I GGYRCC 1 cut(s) 1055
BsrDI GCAATG 2 cut(s) 290, 706
BsrI ACTGG 1 cut(s) 1142
BssECI CCNNGG 1 cut(s) 1300
BssMI GATC 5 cut(s) 18, 367, 396, 543, 1264
BssT1I CCWWGG 1 cut(s) 1300
Bst4CI ACNGT 5 cut(s) 66, 227, 696, 1181, 1443
Bst6I CTCTTC 1 cut(s) 1396
BstAPI GCANNNNNTGC 2 cut(s) 178, 280
BstBAI YACGTR 1 cut(s) 738
BstC8I GCNNGC 5 cut(s) 648, 666, 838, 1160, 1353
BstDEI CTNAG 6 cut(s) 420, 483, 956, 1129, 1184, 1215
BstF5I GGATG 4 cut(s) 404, 640, 706, 1348
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 5 cut(s) 21, 370, 399, 546, 1267
BstMAI GTCTC 3 cut(s) 375, 479, 1393
BstMBI GATC 5 cut(s) 18, 367, 396, 543, 1264
BstMWI GCNNNNNNNGC 2 cut(s) 178, 280
BstNSI RCATGY 3 cut(s) 150, 822, 869
BstSFI CTRYAG 2 cut(s) 76, 354
BstV1I GCAGC 3 cut(s) 267, 1092, 1194
BstV2I GAAGAC 2 cut(s) 239, 477
BstX2I RGATCY 4 cut(s) 367, 396, 543, 1264
BstYI RGATCY 4 cut(s) 367, 396, 543, 1264
BsuI GTATCC 1 cut(s) 1010
BsuRI GGCC 3 cut(s) 101, 252, 1158
BtsCI GGATG 4 cut(s) 404, 640, 706, 1348
BtsI GCAGTG 5 cut(s) 384, 557, 609, 940, 1362
BtsIMutI CAGTG 6 cut(s) 384, 557, 609, 692, 940, 1362
Cac8I GCNNGC 5 cut(s) 648, 666, 838, 1160, 1353
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 1 cut(s) 1316
Csp6I GTAC 2 cut(s) 772, 1119
CspCI CAANNNNNGTGG 2 cut(s) 734, 769
CviQI GTAC 2 cut(s) 772, 1119
DdeI CTNAG 6 cut(s) 420, 483, 956, 1129, 1184, 1215
DpnI GATC 5 cut(s) 20, 369, 398, 545, 1266
DpnII GATC 5 cut(s) 18, 367, 396, 543, 1264
DraIII CACNNNGTG 1 cut(s) 1111
Eam1104I CTCTTC 1 cut(s) 1396
EarI CTCTTC 1 cut(s) 1396
Ecl136II GAGCTC 1 cut(s) 1193
Eco130I CCWWGG 1 cut(s) 1300
Eco24I GRGCYC 1 cut(s) 1195
Eco32I GATATC 1 cut(s) 715
Eco53kI GAGCTC 1 cut(s) 1193
Eco57I CTGAAG 3 cut(s) 101, 237, 1095
Eco72I CACGTG 1 cut(s) 738
EcoICRI GAGCTC 1 cut(s) 1193
EcoO109I RGGNCCY 1 cut(s) 100
EcoRV GATATC 1 cut(s) 715
EcoT14I CCWWGG 1 cut(s) 1300
EcoT22I ATGCAT 2 cut(s) 148, 1455
EcoT38I GRGCYC 1 cut(s) 1195
ErhI CCWWGG 1 cut(s) 1300
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 281, 1081, 1208
FokI GGATG 4 cut(s) 391, 647, 693, 1355
FriOI GRGCYC 1 cut(s) 1195
Fsp4HI GCNGC 3 cut(s) 281, 1081, 1208
FspBI CTAG 4 cut(s) 360, 986, 1043, 1335
FspI TGCGCA 1 cut(s) 182
GlaI GCGC 1 cut(s) 182
GluI GCNGC 3 cut(s) 281, 1081, 1208
HaeIII GGCC 3 cut(s) 101, 252, 1158
HapII CCGG 1 cut(s) 579
HgaI GACGC 1 cut(s) 1316
HhaI GCGC 1 cut(s) 183
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 7 cut(s) 71, 530, 826, 890, 1067, 1198, 1419
HpaII CCGG 1 cut(s) 579
HphI GGTGA 3 cut(s) 302, 1316, 1441
Hpy166II GTNNAC 2 cut(s) 134, 1360
Hpy188I TCNGA 7 cut(s) 142, 262, 421, 484, 1093, 1132, 1197
Hpy188III TCNNGA 5 cut(s) 307, 400, 433, 710, 924
Hpy8I GTNNAC 2 cut(s) 134, 1360
HpyAV CCTTC 6 cut(s) 242, 329, 505, 1070, 1174, 1232
HpyCH4III ACNGT 5 cut(s) 66, 227, 696, 1181, 1443
HpyCH4IV ACGT 2 cut(s) 737, 1403
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 280
HpyF3I CTNAG 6 cut(s) 420, 483, 956, 1129, 1184, 1215
HpySE526I ACGT 2 cut(s) 737, 1403
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 5 cut(s) 18, 367, 396, 543, 1264
LmnI GCTCC 5 cut(s) 350, 424, 504, 742, 1088
Lsp1109I GCAGC 3 cut(s) 267, 1092, 1194
LweI GCATC 2 cut(s) 133, 715
MaeI CTAG 4 cut(s) 360, 986, 1043, 1335
MaeII ACGT 2 cut(s) 737, 1403
MaeIII GTNAC 2 cut(s) 988, 1304
MalI GATC 5 cut(s) 20, 369, 398, 545, 1266
MboI GATC 5 cut(s) 18, 367, 396, 543, 1264
MfeI CAATTG 2 cut(s) 240, 275
MflI RGATCY 4 cut(s) 367, 396, 543, 1264
MhlI GDGCHC 2 cut(s) 670, 1195
MlyI GAGTC 2 cut(s) 65, 1413
MmeI TCCRAC 4 cut(s) 48, 358, 447, 612
Mph1103I ATGCAT 2 cut(s) 148, 1455
MroXI GAANNNNTTC 2 cut(s) 1145, 1266
MseI TTAA 3 cut(s) 410, 812, 1400
MslI CAYNNNNRTG 2 cut(s) 663, 1093
MspI CCGG 1 cut(s) 579
MunI CAATTG 2 cut(s) 240, 275
MwoI GCNNNNNNNGC 2 cut(s) 178, 280
NdeII GATC 5 cut(s) 18, 367, 396, 543, 1264
NlaIV GGNNCC 2 cut(s) 622, 1057
NmuCI GTSAC 1 cut(s) 1304
NsbI TGCGCA 1 cut(s) 182
NsiI ATGCAT 2 cut(s) 148, 1455
NspI RCATGY 3 cut(s) 150, 822, 869
PciI ACATGT 1 cut(s) 865
PcsI WCGNNNNNNNCGW 2 cut(s) 1314, 1400
PdmI GAANNNNTTC 2 cut(s) 1145, 1266
PfeI GAWTC 5 cut(s) 530, 826, 890, 1067, 1198
PkrI GCNGC 3 cut(s) 282, 1082, 1209
PleI GAGTC 2 cut(s) 65, 1413
PmaCI CACGTG 1 cut(s) 738
PmlI CACGTG 1 cut(s) 738
PpsI GAGTC 2 cut(s) 65, 1413
Ppu21I YACGTR 1 cut(s) 738
PscI ACATGT 1 cut(s) 865
Psp124BI GAGCTC 1 cut(s) 1195
PspCI CACGTG 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 622, 1057
PspPI GGNCC 1 cut(s) 100
PsuI RGATCY 4 cut(s) 367, 396, 543, 1264
RsaI GTAC 2 cut(s) 773, 1120
RsaNI GTAC 2 cut(s) 772, 1119
RseI CAYNNNNRTG 2 cut(s) 663, 1093
SacI GAGCTC 1 cut(s) 1195
SaqAI TTAA 3 cut(s) 410, 812, 1400
SatI GCNGC 3 cut(s) 281, 1081, 1208
Sau3AI GATC 5 cut(s) 18, 367, 396, 543, 1264
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 2 cut(s) 65, 1413
SduI GDGCHC 2 cut(s) 670, 1195
SfaNI GCATC 2 cut(s) 133, 715
SfcI CTRYAG 2 cut(s) 76, 354
SmiMI CAYNNNNRTG 2 cut(s) 663, 1093
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SpeI ACTAGT 1 cut(s) 1334
SspI AATATT 1 cut(s) 1144
SspMI CTAG 4 cut(s) 360, 986, 1043, 1335
SstI GAGCTC 1 cut(s) 1195
StyI CCWWGG 1 cut(s) 1300
TaaI ACNGT 5 cut(s) 66, 227, 696, 1181, 1443
TaiI ACGT 2 cut(s) 740, 1406
TaqI TCGA 7 cut(s) 333, 552, 854, 1260, 1317, 1394, 1422
TfiI GAWTC 5 cut(s) 530, 826, 890, 1067, 1198
Tru1I TTAA 3 cut(s) 410, 812, 1400
Tru9I TTAA 3 cut(s) 410, 812, 1400
TscAI CASTG 6 cut(s) 391, 564, 609, 699, 940, 1362
TseFI GTSAC 1 cut(s) 1304
TseI GCWGC 3 cut(s) 280, 1080, 1207
Tsp45I GTSAC 1 cut(s) 1304
TspDTI ATGAA 4 cut(s) 524, 563, 800, 1260
TspGWI ACGGA 2 cut(s) 31, 905
TspRI CASTG 6 cut(s) 391, 564, 609, 699, 940, 1362
XapI RAATTY 3 cut(s) 594, 911, 1367
XceI RCATGY 3 cut(s) 150, 822, 869
XmnI GAANNNNTTC 2 cut(s) 1145, 1266
XspI CTAG 4 cut(s) 360, 986, 1043, 1335
Zsp2I ATGCAT 2 cut(s) 148, 1455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.