Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015071.1

Orthogroup ID

OG0009450

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6656

Gene Structure 6656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atgaatccggactggagcggaccaggaatgattgagaagcttcatttgagcgttgacttggagtttgattgtcagctcgaagaggagggggtacctgcagaaaaccctccgatgcctaagtcagtacgtttcttagttgagtgtagtaagaggaatcataatgagatggtttacctaagtgttagtccttcgcctacaacagctcactccttgccgcccaaacactctcagagtctctctctcgcttgcgtgctcagctcgaatctggcttcaatggaggtcgataagcaattgtcacctgatgagttggataaggagtgctcaattctacttgagctagatgaaaatgaccctctttttgataaaaagaagaaactgctacaagataacggatttaaaactaaggaacaagtacgcataaaaaggtcatcagatcctatttggctcagtacctccttgaaagtaatgcttcaaatagcacggatcataaaacttgatgaggtagagctttattttgggggagaagaacagttggactcctatagtcccagaaatgagcttgaggccctcaattatattcttcagcttgtggaaagttcactctccgatgcatgtgaaataacaaagaatgtcctgcaagacttgcgcaatcttaccattgataagatttgtcagtttgctgaagaaaacagtttgaagactacaattgtagaaggccagaactctgataaagaaaagcaattgctgcaatggggtgaaaacaatggtgtcaagacaaggttgcagatagcttatgtcgaaggggctggtagaggagctatagctagagaagatctaaaagttggagacactgctttggagatcccgacatccttaataatttctgaggagcttgtccagaaaactgatatgtatcatgtattagagaagttggaagacacttcctctgagactatgttattgttgtggagcatgaaggagaggcataatactgattcacaatacaagatctacttcgatacactgccagaggattttcatacaggactgagttttggaatttcggcagtgatgtctttgtatggaaccttgctgttggatgagataatgcaagcaaaagagcatttgcgtgctcaatatgataagcttttccctgcactgtgcaatgagcatcctgatatctttcccccagagctttacacgtgggagcaattcttgtgggcgtgtgaattgtggtactcaaatagcatgaaaatcatgtttgctgatggaaaattaaggacatgcttgattcctattgctggctttttgaaccattcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

440

Amino Acids

50.1

Weight (kDa)

4.77

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18850 AT2G18850
fragaria_vesca	FvH4_4g08310 FvH4_4g08310 FvH4_4g08310
malus_domestica	MD13G1255300.v1.1 MD16G1258300.v1.1 MD16G1258400.v1.1
prunus_persica	Prupe.1G086300_v2.0.a1
pyrus_communis	pycom16g22180
rosa_chinensis	RchiOBHm_Chr4g0402581
rosa_laevigata	RLG00000009066
rosa_multiflora	Rmu_co7971726.1_g000001 Rmu_sc0015071.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347290
rosa_rugosa	Rorug04G0036700.1 Rorug04G0036800
rosa_samantha	Rh4AG114400 Rh4BG106500 Rh4CG120900 Rh4DG106400
rosa_wichuraiana	Rw4G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	647
Acc36I	ACCTGC	1 cut(s)	103
Acc65I	GGTACC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	91
AccBSI	CCGCTC	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	2 cut(s)	18, 215
AclWI	GGATC	3 cut(s)	428, 491, 856
AcsI	RAATTY	1 cut(s)	1059
AcuI	CTGAAG	2 cut(s)	566, 702
AcvI	CACGTG	1 cut(s)	1203
AfaI	GTAC	5 cut(s)	93, 126, 414, 451, 1238
AfiI	CCNNNNNNNGG	1 cut(s)	1301
AflIII	ACRYGT	1 cut(s)	1200
AgsI	TTSAA	5 cut(s)	273, 460, 473, 697, 1312
AjnI	CCWGG	1 cut(s)	22
Alw21I	GWGCWC	3 cut(s)	255, 323, 1135
Alw26I	GTCTC	3 cut(s)	239, 840, 944
AlwI	GGATC	3 cut(s)	428, 491, 856
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	2 cut(s)	564, 715
ApeKI	GCWGC	1 cut(s)	745
ApoI	RAATTY	1 cut(s)	1059
ArsI	GACNNNNNNTTYG	4 cut(s)	47, 79, 341, 373
Asp718I	GGTACC	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	2 cut(s)	20, 565
AsuHPI	GGTGA	2 cut(s)	288, 767
AvaII	GGWCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	91
BbrPI	CACGTG	1 cut(s)	1203
BbsI	GAAGAC	2 cut(s)	704, 942
Bbv12I	GWGCWC	3 cut(s)	255, 323, 1135
BbvI	GCAGC	1 cut(s)	732
BccI	CCATC	2 cut(s)	160, 1262
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	3 cut(s)	239, 840, 944
BfaI	CTAG	2 cut(s)	338, 825
BfmI	CTRYAG	3 cut(s)	96, 541, 819
BfuAI	ACCTGC	1 cut(s)	103
BglII	AGATCT	2 cut(s)	832, 1008
BisI	GCNGC	2 cut(s)	215, 746
BlpI	GCTNAGC	1 cut(s)	254
BlsI	GCNGC	2 cut(s)	216, 747
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	2 cut(s)	20, 565
BmiI	GGNNCC	2 cut(s)	93, 1087
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	3 cut(s)	102, 598, 1180
BpiI	GAAGAC	2 cut(s)	704, 942
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	353, 581
BsaAI	YACGTR	1 cut(s)	1203
BsaBI	GATNNNNATC	1 cut(s)	912
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	1301
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	2 cut(s)	755, 1171
Bse8I	GATNNNNATC	1 cut(s)	912
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	24
BseGI	GGATG	3 cut(s)	869, 1105, 1171
BseJI	GATNNNNATC	1 cut(s)	912
BseLI	CCNNNNNNNGG	1 cut(s)	1301
BseMI	GCAATG	2 cut(s)	755, 1171
BseMII	CTCAG	6 cut(s)	242, 268, 460, 876, 939, 1040
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	3 cut(s)	98, 828, 902
BseXI	GCAGC	1 cut(s)	732
BsgI	GTGCAG	1 cut(s)	1140
BshFI	GGCC	2 cut(s)	566, 717
BshNI	GGYRCC	1 cut(s)	91
BsiHKAI	GWGCWC	3 cut(s)	255, 323, 1135
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	1301
BsmAI	GTCTC	3 cut(s)	239, 840, 944
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	566, 717
Bsp1286I	GDGCHC	3 cut(s)	255, 323, 1135
Bsp13I	TCCGGA	1 cut(s)	7
Bsp143I	GATC	5 cut(s)	433, 483, 832, 861, 1008
Bsp1720I	GCTNAGC	1 cut(s)	254
BspACI	CCGC	2 cut(s)	18, 215
BspANI	GGCC	2 cut(s)	566, 717
BspCNI	CTCAG	6 cut(s)	241, 267, 459, 877, 940, 1041
BspEI	TCCGGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	93, 1087
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	3 cut(s)	428, 491, 856
BspT107I	GGYRCC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	18
BsrDI	GCAATG	2 cut(s)	755, 1171
BsrI	ACTGG	1 cut(s)	17
BssMI	GATC	5 cut(s)	433, 483, 832, 861, 1008
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	531, 692, 1161
Bst6I	CTCTTC	1 cut(s)	75
BstAPI	GCANNNNNTGC	2 cut(s)	643, 745
BstBAI	YACGTR	1 cut(s)	1203
BstC8I	GCNNGC	5 cut(s)	247, 251, 1113, 1131, 1303
BstF5I	GGATG	3 cut(s)	869, 1105, 1171
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	5 cut(s)	436, 486, 835, 864, 1011
BstMAI	GTCTC	3 cut(s)	239, 840, 944
BstMBI	GATC	5 cut(s)	433, 483, 832, 861, 1008
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 643, 745
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	2 cut(s)	615, 1287
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	3 cut(s)	96, 541, 819
BstV1I	GCAGC	1 cut(s)	732
BstV2I	GAAGAC	2 cut(s)	704, 942
BstX2I	RGATCY	4 cut(s)	433, 832, 861, 1008
BstYI	RGATCY	4 cut(s)	433, 832, 861, 1008
BsuRI	GGCC	2 cut(s)	566, 717
BtsCI	GGATG	3 cut(s)	869, 1105, 1171
BtsI	GCAGTG	3 cut(s)	849, 1022, 1074
BtsIMutI	CAGTG	4 cut(s)	849, 1022, 1074, 1157
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	5 cut(s)	247, 251, 1113, 1131, 1303
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	2 cut(s)	20, 565
Csp6I	GTAC	5 cut(s)	92, 125, 413, 450, 1237
CspCI	CAANNNNNGTGG	2 cut(s)	1199, 1234
CviAII	CATG	6 cut(s)	612, 917, 973, 1249, 1258, 1284
CviQI	GTAC	5 cut(s)	92, 125, 413, 450, 1237
DpnI	GATC	5 cut(s)	435, 485, 834, 863, 1010
DpnII	GATC	5 cut(s)	433, 483, 832, 861, 1008
DraI	TTTAAA	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	1180
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	566, 702
Eco72I	CACGTG	1 cut(s)	1203
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	1180
EcoT22I	ATGCAT	1 cut(s)	613
FaeI	CATG	6 cut(s)	615, 920, 976, 1252, 1261, 1287
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 998, 1030
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	6 cut(s)	611, 916, 972, 1248, 1257, 1283
Fnu4HI	GCNGC	2 cut(s)	215, 746
FokI	GGATG	3 cut(s)	856, 1112, 1158
Fsp4HI	GCNGC	2 cut(s)	215, 746
FspBI	CTAG	2 cut(s)	338, 825
FspI	TGCGCA	1 cut(s)	647
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	2 cut(s)	215, 746
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	566, 717
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	6 cut(s)	615, 920, 976, 1252, 1261, 1287
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	2 cut(s)	38, 1145
HinfI	GANTC	7 cut(s)	4, 154, 232, 262, 536, 995, 1291
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	288, 767
Hpy166II	GTNNAC	3 cut(s)	55, 172, 599
Hpy188I	TCNGA	7 cut(s)	111, 231, 433, 607, 727, 886, 949
Hpy188III	TCNNGA	5 cut(s)	8, 772, 865, 898, 1175
Hpy8I	GTNNAC	3 cut(s)	55, 172, 599
HpyAV	CCTTC	4 cut(s)	198, 707, 794, 970
HpyCH4III	ACNGT	3 cut(s)	531, 692, 1161
HpyCH4IV	ACGT	2 cut(s)	127, 1202
HpyCH4V	TGCA	8 cut(s)	98, 611, 637, 748, 784, 1111, 1157, 1164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 643, 745
HpySE526I	ACGT	2 cut(s)	127, 1202
Hsp92II	CATG	6 cut(s)	615, 920, 976, 1252, 1261, 1287
HspAI	GCGC	1 cut(s)	646
Kpn2I	TCCGGA	1 cut(s)	7
KpnI	GGTACC	1 cut(s)	95
Kzo9I	GATC	5 cut(s)	433, 483, 832, 861, 1008
LmnI	GCTCC	5 cut(s)	15, 815, 889, 969, 1207
Lsp1109I	GCAGC	1 cut(s)	732
LweI	GCATC	3 cut(s)	102, 598, 1180
MaeI	CTAG	2 cut(s)	338, 825
MaeII	ACGT	2 cut(s)	127, 1202
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	5 cut(s)	435, 485, 834, 863, 1010
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	5 cut(s)	433, 483, 832, 861, 1008
MboII	GAAGA	8 cut(s)	92, 382, 536, 572, 695, 709, 842, 947
MfeI	CAATTG	3 cut(s)	290, 705, 740
MflI	RGATCY	4 cut(s)	433, 832, 861, 1008
MhlI	GDGCHC	3 cut(s)	255, 323, 1135
MlyI	GAGTC	2 cut(s)	241, 530
MmeI	TCCRAC	5 cut(s)	288, 513, 823, 912, 1077
Mph1103I	ATGCAT	1 cut(s)	613
MroI	TCCGGA	1 cut(s)	7
MseI	TTAA	3 cut(s)	396, 875, 1277
MslI	CAYNNNNRTG	1 cut(s)	1128
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	3 cut(s)	290, 705, 740
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	255, 643, 745
NdeII	GATC	5 cut(s)	433, 483, 832, 861, 1008
NlaIII	CATG	6 cut(s)	615, 920, 976, 1252, 1261, 1287
NlaIV	GGNNCC	2 cut(s)	93, 1087
NmuCI	GTSAC	1 cut(s)	294
NsbI	TGCGCA	1 cut(s)	647
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	2 cut(s)	615, 1287
PfeI	GAWTC	5 cut(s)	4, 154, 262, 995, 1291
PkrI	GCNGC	2 cut(s)	216, 747
PleI	GAGTC	2 cut(s)	240, 530
PmaCI	CACGTG	1 cut(s)	1203
PmlI	CACGTG	1 cut(s)	1203
PpsI	GAGTC	2 cut(s)	240, 530
Ppu21I	YACGTR	1 cut(s)	1203
Psp6I	CCWGG	1 cut(s)	22
PspCI	CACGTG	1 cut(s)	1203
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	93, 1087
PspPI	GGNCC	2 cut(s)	20, 565
PstI	CTGCAG	1 cut(s)	100
PsuI	RGATCY	4 cut(s)	433, 832, 861, 1008
RsaI	GTAC	5 cut(s)	93, 126, 414, 451, 1238
RsaNI	GTAC	5 cut(s)	92, 125, 413, 450, 1237
RseI	CAYNNNNRTG	1 cut(s)	1128
SaqAI	TTAA	3 cut(s)	396, 875, 1277
SatI	GCNGC	2 cut(s)	215, 746
Sau3AI	GATC	5 cut(s)	433, 483, 832, 861, 1008
Sau96I	GGNCC	2 cut(s)	20, 565
SchI	GAGTC	2 cut(s)	241, 530
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	3 cut(s)	255, 323, 1135
SfaNI	GCATC	3 cut(s)	102, 598, 1180
SfcI	CTRYAG	3 cut(s)	96, 541, 819
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	1128
SmlI	CTYRAG	2 cut(s)	332, 560
SmoI	CTYRAG	2 cut(s)	332, 560
SsiI	CCGC	2 cut(s)	18, 215
SspMI	CTAG	2 cut(s)	338, 825
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	3 cut(s)	531, 692, 1161
TaiI	ACGT	2 cut(s)	130, 1205
TaqI	TCGA	5 cut(s)	78, 260, 282, 798, 1017
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	5 cut(s)	4, 154, 262, 995, 1291
Tru1I	TTAA	3 cut(s)	396, 875, 1277
Tru9I	TTAA	3 cut(s)	396, 875, 1277
TscAI	CASTG	4 cut(s)	856, 1029, 1074, 1164
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	1 cut(s)	745
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	6 cut(s)	17, 32, 357, 989, 1028, 1265
TspGWI	ACGGA	2 cut(s)	405, 496
TspRI	CASTG	4 cut(s)	856, 1029, 1074, 1164
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	1059
XceI	RCATGY	2 cut(s)	615, 1287
XspI	CTAG	2 cut(s)	338, 825
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.