Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013107

Physical Location & Seq

Genomic Coordinates Forward (+)

8503217 .. 8504924

Gene Structure 1708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATGTTTCGCACTTCATTGATGCGTTTCGCGGCAGCTTTCTTCGCCATTGTCTTCGTCGTTCTCGTCGGTGTCGCTCGCAGTGAGGAGTGTACAAGAACTTGCATTGCACAGAATTGTGACACTCTTTCTATTCGATATGGGAAGTATTGTGGGATTGGACATTCTGGTTGTCCTGGTGAGGAGCCTTGTGATGATCTTGATGCTTGTTGTAAGATCCATGACCATTGTGTTGAGTTAAACGGTATGACTAACATAAGCTGCCATAAGAAGTTCCAGCGATGCGTAAACAGGCTAAGCAAAGCGATAAAACAGTCTAAAAACAAAAAGGTTGGATTTTCCACAAAGTGCCCTTATTCAGTAGTCATACCTACGGTGAATCAAGGAATGGATATTGGAATCTTATTCAGTCAATTAGGTAATGATATGAAAACAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0012505 GO:0016043 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045927 GO:0048229 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051704 GO:0052689 GO:0060560 GO:0065007 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.29

Weight (kDa)

8.61

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19690 AT2G19690 AT2G19690
fragaria_vesca	FvH4_1g06930
malus_domestica	MD02G1073600.v1.1 MD15G1203100.v1.1
prunus_persica	Prupe.7G214100_v2.0.a1
pyrus_communis	pycom02g05800 pycom15g18030
rosa_chinensis	RchiOBHm_Chr2g0092871
rosa_laevigata	RLG00000016339
rosa_multiflora	Rmu_sc0003262.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148760
rosa_rugosa	Rorug02G0029800
rosa_samantha	Rh2BG076900 Rh2CG079200 Rh2DG074200
rosa_wichuraiana	Rw2G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	211
AdeI	CACNNNGTG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	3 cut(s)	38, 261, 439
AluI	AGCT	3 cut(s)	38, 261, 439
AlwI	GGATC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	35, 261
AsuHPI	GGTGA	2 cut(s)	191, 388
BaeGI	GKGCMC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	47, 248
BciT130I	CCWGG	1 cut(s)	177
BisI	GCNGC	3 cut(s)	33, 36, 262
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	3 cut(s)	34, 37, 263
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	3 cut(s)	12, 193, 272
BpiI	GAAGAC	1 cut(s)	46
Bpu1102I	GCTNAGC	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	105
BseRI	GAGGAG	2 cut(s)	101, 197
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	47, 248
Bsh1236I	CGCG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp1407I	TGTACA	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	196, 216
Bsp1720I	GCTNAGC	1 cut(s)	296
BspACI	CCGC	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	92
BssMI	GATC	2 cut(s)	196, 216
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	245, 315, 376
BstAUI	TGTACA	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	199, 219
BstMBI	GATC	2 cut(s)	196, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	47, 248
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	5 cut(s)	38, 187, 261, 295, 439
CviKI_1	RGCY	5 cut(s)	38, 187, 261, 295, 439
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	198, 218
DpnII	GATC	2 cut(s)	196, 216
DraIII	CACNNNGTG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	224
FaiI	YATR	8 cut(s)	141, 222, 248, 257, 267, 368, 428, 442
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	33, 36, 262
Fsp4HI	GCNGC	3 cut(s)	33, 36, 262
GluI	GCNGC	3 cut(s)	33, 36, 262
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	2 cut(s)	379, 399
HphI	GGTGA	2 cut(s)	191, 388
Hpy166II	GTNNAC	2 cut(s)	93, 289
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	93, 289
Hpy99I	CGWCG	2 cut(s)	62, 71
HpyCH4III	ACNGT	3 cut(s)	245, 315, 376
HpyCH4V	TGCA	2 cut(s)	105, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	196, 216
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	5 cut(s)	153, 162, 189, 277, 290
Lsp1109I	GCAGC	2 cut(s)	47, 248
LweI	GCATC	3 cut(s)	12, 193, 272
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	198, 218
MboI	GATC	2 cut(s)	196, 216
MboII	GAAGA	2 cut(s)	34, 46
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	2 cut(s)	115, 413
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	2 cut(s)	79, 175
MseI	TTAA	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	2 cut(s)	196, 216
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	379, 399
PkrI	GCNGC	3 cut(s)	34, 37, 263
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	3 cut(s)	33, 36, 262
Sau3AI	GATC	2 cut(s)	196, 216
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	6 cut(s)	40, 263, 333, 373, 421, 441
SfaNI	GCATC	3 cut(s)	12, 193, 272
Sse9I	AATT	2 cut(s)	115, 413
SsiI	CCGC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	245, 315, 376
TaqI	TCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	115, 413
TatI	WGTACW	1 cut(s)	92
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	379, 399
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	35, 261
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	6, 443
TspRI	CASTG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.