Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013107

Physical Location & Seq

Genomic Coordinates Reverse (-)

5916313 .. 5919148

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1073600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCATCAATGTCGCGAGACGCCGGCCTCCGTCGCATGACGCGGTTCGCCGCCGCGCTAGCCGTAGTCATCTTCTCCCTCGCCGTCGTCGCCCACTGTTCCAACAATGATTCCGAGGTGAGTTGCAGCCGGATCTGCGTGGCGGAGAACTGTAATTCGGTTGGGATTCGATACGGGAAGTACTGCGGGGTAGGGTGGACCGGCTGCCCGGGAGAGCAGCCCTGCGATGATCTTGATGCTTGCTGCAAGATTCATGATGATTGTGTTGGCAAAAAGGGTATGACCGATATTAAATGCCATGAGAAGTTCAAGCGCTGCATAAAGAAAGTACATAAATCTGGGAAGGTTGGATTTTCTAAGCAGTGTCCTTATGATACCGCTGTGCCTACTATGGTACAGGGTATGGATTTGGCTATCTTACTGAGCCAGTTTGGTAACTCGAAGCTTGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0012505 GO:0016043 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045927 GO:0048229 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051704 GO:0052689 GO:0060560 GO:0065007 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.39

Weight (kDa)

8.56

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19690 AT2G19690 AT2G19690
fragaria_vesca	FvH4_1g06930
malus_domestica	MD02G1073600.v1.1 MD15G1203100.v1.1
prunus_persica	Prupe.7G214100_v2.0.a1
pyrus_communis	pycom02g05800 pycom15g18030
rosa_chinensis	RchiOBHm_Chr2g0092871
rosa_laevigata	RLG00000016339
rosa_multiflora	Rmu_sc0003262.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148760
rosa_rugosa	Rorug02G0029800
rosa_samantha	Rh2BG076900 Rh2CG079200 Rh2DG074200
rosa_wichuraiana	Rw2G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	16, 43, 56
AciI	CCGC	6 cut(s)	43, 51, 54, 143, 186, 378
AclWI	GGATC	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	3 cut(s)	182, 330, 396
AfeI	AGCGCT	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	2 cut(s)	445, 451
AluI	AGCT	2 cut(s)	445, 451
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	314
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	5 cut(s)	126, 204, 217, 243, 315
AspLEI	GCGC	2 cut(s)	58, 315
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	2 cut(s)	209, 210
AsuHPI	GGTGA	1 cut(s)	130
AsuNHI	GCTAGC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	198
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BbvI	GCAGC	5 cut(s)	138, 191, 229, 230, 302
BceAI	ACGGC	2 cut(s)	47, 68
BcnI	CCSGG	2 cut(s)	209, 210
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	7 cut(s)	51, 54, 127, 205, 218, 244, 316
BlsI	GCNGC	7 cut(s)	52, 55, 128, 206, 219, 245, 317
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	209, 210
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	209, 210
BmsI	GCATC	1 cut(s)	226
BmtI	GCTAGC	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	209, 210
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	114, 208
Bse118I	RCCGGY	2 cut(s)	23, 200
Bse1I	ACTGG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	114, 208
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	5 cut(s)	138, 191, 229, 230, 302
Bsh1236I	CGCG	3 cut(s)	16, 43, 56
BshFI	GGCC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	4 cut(s)	24, 130, 201, 209
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	132, 229
Bsp68I	TCGCGA	1 cut(s)	16
BspACI	CCGC	6 cut(s)	43, 51, 54, 143, 186, 378
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	3 cut(s)	16, 43, 56
BspHI	TCATGA	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	140
BsrFI	RCCGGY	2 cut(s)	23, 200
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	2 cut(s)	23, 200
BssECI	CCNNGG	2 cut(s)	114, 208
BssMI	GATC	2 cut(s)	132, 229
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	98, 152
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	25, 60, 241
BstDEI	CTNAG	2 cut(s)	357, 422
BstFNI	CGCG	3 cut(s)	16, 43, 56
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	2 cut(s)	58, 315
BstKTI	GATC	2 cut(s)	135, 232
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	132, 229
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 59, 89, 135
BstSCI	CCNGG	2 cut(s)	207, 208
BstUI	CGCG	3 cut(s)	16, 43, 56
BstV1I	GCAGC	5 cut(s)	138, 191, 229, 230, 302
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	94, 368
BtuMI	TCGCGA	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	25, 60, 241
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	2 cut(s)	58, 315
Cfr10I	RCCGGY	2 cut(s)	23, 200
Cfr13I	GGNCC	1 cut(s)	198
Cfr9I	CCCGGG	1 cut(s)	208
CseI	GACGC	2 cut(s)	29, 49
Csp6I	GTAC	3 cut(s)	181, 329, 395
CviAII	CATG	3 cut(s)	37, 254, 299
CviJI	RGCY	9 cut(s)	27, 62, 129, 204, 220, 413, 426, 445, 451
CviKI_1	RGCY	9 cut(s)	27, 62, 129, 204, 220, 413, 426, 445, 451
CviQI	GTAC	3 cut(s)	181, 329, 395
DdeI	CTNAG	2 cut(s)	357, 422
DpnI	GATC	2 cut(s)	134, 231
DpnII	GATC	2 cut(s)	132, 229
EciI	GGCGGA	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	40, 257, 302
FaiI	YATR	9 cut(s)	38, 255, 281, 300, 320, 333, 372, 392, 404
FatI	CATG	3 cut(s)	36, 253, 298
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	7 cut(s)	51, 54, 127, 205, 218, 244, 316
Fsp4HI	GCNGC	7 cut(s)	51, 54, 127, 205, 218, 244, 316
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	2 cut(s)	57, 314
GluI	GCNGC	7 cut(s)	51, 54, 127, 205, 218, 244, 316
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	4 cut(s)	24, 130, 201, 209
HgaI	GACGC	2 cut(s)	29, 49
HhaI	GCGC	2 cut(s)	58, 315
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	40, 257, 302
Hin6I	GCGC	2 cut(s)	56, 313
HinP1I	GCGC	2 cut(s)	56, 313
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	110, 166, 250
HpaII	CCGG	4 cut(s)	24, 130, 201, 209
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	3 cut(s)	15, 233, 254
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	3 cut(s)	36, 89, 92
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	98, 152
HpyCH4V	TGCA	3 cut(s)	126, 246, 318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 59, 89, 135
HpyF3I	CTNAG	2 cut(s)	357, 422
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	40, 257, 302
HspAI	GCGC	2 cut(s)	56, 313
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	132, 229
LpnPI	CCDG	8 cut(s)	37, 143, 214, 222, 235, 324, 383, 440
Lsp1109I	GCAGC	5 cut(s)	138, 191, 229, 230, 302
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	2 cut(s)	134, 231
MboI	GATC	2 cut(s)	132, 229
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	132
MluCI	AATT	1 cut(s)	154
MmeI	TCCRAC	2 cut(s)	126, 328
MnlI	CCTC	3 cut(s)	38, 89, 109
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	4 cut(s)	24, 130, 201, 209
MspR9I	CCNGG	2 cut(s)	209, 210
MvnI	CGCG	3 cut(s)	16, 43, 56
MwoI	GCNNNNNNNGC	4 cut(s)	33, 59, 89, 135
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	2 cut(s)	209, 210
NdeII	GATC	2 cut(s)	132, 229
NgoMIV	GCCGGC	1 cut(s)	23
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	40, 257, 302
NruI	TCGCGA	1 cut(s)	16
PagI	TCATGA	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	110, 166, 250
PkrI	GCNGC	7 cut(s)	52, 55, 128, 206, 219, 245, 317
PspPI	GGNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	132
RruI	TCGCGA	1 cut(s)	16
RsaI	GTAC	3 cut(s)	182, 330, 396
RsaNI	GTAC	3 cut(s)	181, 329, 395
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	7 cut(s)	51, 54, 127, 205, 218, 244, 316
Sau3AI	GATC	2 cut(s)	132, 229
Sau96I	GGNCC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	209, 210
SetI	ASST	4 cut(s)	120, 348, 447, 453
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	198
SmaI	CCCGGG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	6 cut(s)	43, 51, 54, 143, 186, 378
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	207, 208
TaaI	ACNGT	2 cut(s)	98, 152
TaqI	TCGA	2 cut(s)	169, 440
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	154
TatI	WGTACW	2 cut(s)	180, 328
TauI	GCSGC	2 cut(s)	53, 56
TfiI	GAWTC	3 cut(s)	110, 166, 250
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	101, 368
TseI	GCWGC	5 cut(s)	126, 204, 217, 243, 315
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	20
TspMI	CCCGGG	1 cut(s)	208
TspRI	CASTG	2 cut(s)	101, 368
VpaK11BI	GGWCC	1 cut(s)	198
XmaI	CCCGGG	1 cut(s)	208
XspI	CTAG	1 cut(s)	59
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.