Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013107

Physical Location & Seq

Genomic Coordinates Reverse (-)

5903807 .. 5905720

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATATCCATCATTCTGGACAATGAACTCGACGATCAAATGAGCGACCTTTATATAAATAGTGTTTTTGACTTTATTGGTATCCTATTGGCAAAGCCAGCCAAGGGTATTTTAGTAATATCAAACAGCGTCATTCTGTCCAATGAAAGAGGAGAACTGGAGCAACGCAAACTGTATTTAACAGACAGGAAAACGCCAGAGAAGACGACGAAGCAATTGAATCTCCCGCAATCGAGAATGTTGGGAGCTGCCGCCGTAACGACGCGTGTCGCCGTCGCTGTCATCTTCCTCGCCTCCGTCGCCCTCTGCTCCAACAACAATTCCGAGGAGTTGTGCAGCAGAACCTGCGCAGCAGAGAACTGCAATTCGGTTGGGATTCGATACGGGAAGTACTGCGGAGTAGGGTGGACCGGCTGCCCAGGAGAGAAGCCATGTGATGATGTTGACGCTTGCTGCAAGATTCATGATGACTGTGTTGGCAATACAGGTATTAATGATGTAAAATGCCATGAGAAGTTCAAGAAATGCATAAAGAAAGTACAAAAATCTGGGAAGGTTGGGTTTTCGAAGCAGTGCCCTTATGAAACAGTTGTGCCGACTATGGTGCAGGGTATGGATTTGGCCATCATGTTCAGCCAGTTTAGCAATTCAAAACTTGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0012505 GO:0016043 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045927 GO:0048229 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051704 GO:0052689 GO:0060560 GO:0065007 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.22

Weight (kDa)

7.4

Isoelectric Point (pI)

21.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19690 AT2G19690 AT2G19690
fragaria_vesca	FvH4_1g06930
malus_domestica	MD02G1073600.v1.1 MD15G1203100.v1.1
prunus_persica	Prupe.7G214100_v2.0.a1
pyrus_communis	pycom02g05800 pycom15g18030
rosa_chinensis	RchiOBHm_Chr2g0092871
rosa_laevigata	RLG00000016339
rosa_multiflora	Rmu_sc0003262.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148760
rosa_rugosa	Rorug02G0029800
rosa_samantha	Rh2BG076900 Rh2CG079200 Rh2DG074200
rosa_wichuraiana	Rw2G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	353
AccII	CGCG	1 cut(s)	265
AciI	CCGC	3 cut(s)	227, 252, 396
AcoI	YGGCCR	1 cut(s)	621
AfaI	GTAC	2 cut(s)	392, 540
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	4 cut(s)	220, 520, 651, 659
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	5 cut(s)	248, 336, 350, 414, 453
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	408
AsuII	TTCGAA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	5 cut(s)	235, 348, 362, 401, 440
BccI	CCATC	2 cut(s)	17, 632
BceAI	ACGGC	2 cut(s)	239, 257
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciT130I	CCWGG	1 cut(s)	420
BciVI	GTATCC	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	6 cut(s)	249, 252, 337, 351, 415, 454
BlsI	GCNGC	6 cut(s)	250, 253, 338, 352, 416, 455
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	420
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	102, 324, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	162, 637
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	102, 324, 418
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	162, 637
BseRI	GAGGAG	2 cut(s)	165, 341
BseSI	GKGCMC	1 cut(s)	578
BseXI	GCAGC	5 cut(s)	235, 348, 362, 401, 440
BsgI	GTGCAG	2 cut(s)	355, 626
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	623
Bsp119I	TTCGAA	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	3 cut(s)	227, 252, 396
BspANI	GGCC	1 cut(s)	623
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	566
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	162, 637
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	102, 324, 418
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	3 cut(s)	174, 473, 589
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	99, 451
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 299, 345, 642
BstNI	CCWGG	1 cut(s)	420
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	578
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	5 cut(s)	235, 348, 362, 401, 440
BstV2I	GAAGAC	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	623
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	1 cut(s)	578
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	99, 451
CaiI	CAGNNNCTG	1 cut(s)	345
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	408
CseI	GACGC	3 cut(s)	118, 271, 455
Csp6I	GTAC	2 cut(s)	391, 539
CviAII	CATG	4 cut(s)	432, 464, 509, 628
CviJI	RGCY	7 cut(s)	97, 101, 248, 414, 430, 623, 636
CviKI_1	RGCY	7 cut(s)	97, 101, 248, 414, 430, 623, 636
CviQI	GTAC	2 cut(s)	391, 539
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	530
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	435, 467, 512, 631
FatI	CATG	4 cut(s)	431, 463, 508, 627
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	6 cut(s)	249, 252, 337, 351, 415, 454
Fsp4HI	GCNGC	6 cut(s)	249, 252, 337, 351, 415, 454
FspI	TGCGCA	1 cut(s)	349
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	6 cut(s)	249, 252, 337, 351, 415, 454
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	3 cut(s)	118, 271, 455
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	435, 467, 512, 631
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	3 cut(s)	220, 376, 460
HpaII	CCGG	1 cut(s)	411
Hpy166II	GTNNAC	2 cut(s)	408, 445
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	4 cut(s)	17, 234, 464, 520
Hpy8I	GTNNAC	2 cut(s)	408, 445
Hpy99I	CGWCG	5 cut(s)	35, 211, 265, 278, 302
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	3 cut(s)	174, 473, 589
HpyCH4V	TGCA	5 cut(s)	336, 363, 456, 528, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 299, 345, 642
Hsp92II	CATG	4 cut(s)	435, 467, 512, 631
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	3 cut(s)	160, 245, 314
Lsp1109I	GCAGC	5 cut(s)	235, 348, 362, 401, 440
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	214, 277
MfeI	CAATTG	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	578
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	4 cut(s)	215, 319, 364, 646
MluI	ACGCGT	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	143, 299, 304, 314, 319
Mox20I	TGGCCA	1 cut(s)	623
Mph1103I	ATGCAT	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	2 cut(s)	179, 492
Msp20I	TGGCCA	1 cut(s)	623
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	4 cut(s)	98, 299, 345, 642
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	4 cut(s)	435, 467, 512, 631
NsbI	TGCGCA	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	566
PagI	TCATGA	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	220, 376, 460
PkrI	GCNGC	6 cut(s)	250, 253, 338, 352, 416, 455
PshAI	GACNNNNGTC	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	345
RsaI	GTAC	2 cut(s)	392, 540
RsaNI	GTAC	2 cut(s)	391, 539
SaqAI	TTAA	2 cut(s)	179, 492
SatI	GCNGC	6 cut(s)	249, 252, 337, 351, 415, 454
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	408
ScaI	AGTACT	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	578
SetI	ASST	5 cut(s)	51, 250, 347, 490, 558
SfuI	TTCGAA	1 cut(s)	566
SinI	GGWCC	1 cut(s)	408
Sse9I	AATT	4 cut(s)	215, 319, 364, 646
SsiI	CCGC	3 cut(s)	227, 252, 396
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	3 cut(s)	174, 473, 589
TaqI	TCGA	4 cut(s)	30, 233, 379, 566
TasI	AATT	4 cut(s)	215, 319, 364, 646
TatI	WGTACW	2 cut(s)	390, 538
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	220, 376, 460
Tru1I	TTAA	2 cut(s)	179, 492
Tru9I	TTAA	2 cut(s)	179, 492
TscAI	CASTG	1 cut(s)	578
TseI	GCWGC	5 cut(s)	248, 336, 350, 414, 453
TspDTI	ATGAA	4 cut(s)	39, 159, 452, 597
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	408
VspI	ATTAAT	1 cut(s)	492
ZrmI	AGTACT	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.