Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013107

Physical Location & Seq

Genomic Coordinates Reverse (-)

3662364 .. 3664414

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTGGGAGCTCCCGCCGTGACGACGCGTGTCGCCGCCGCATTCGCCGTCTCCTTCATCCTCCTCGCCTCCGTCGCCCACTGCTCCAACAACAATTCCGAGGAGCTTTGCAGCCGAACCTGCGCAGCGGAGAACTGCAATTCGGTTGGGATTCGGTACGGGAAGTACTGCGGAGTAGGGTGGACCGGCTGCCCTGGAGAGAAGCCGTGTGATGATGTTGATGCTTGCTGCAAGATTCATGATGACTGTGTTGGCAATACAGGTGTTCACGATGTAAAATGCCATGAGAAGTTCAAGAAATGCATAAAGAAAGTACACAAATCTGGGAAGGTTGGATTTTCGAAGCAGTGCCCGTACGAAACAGTTGTGCCTACTATGGTGCAGGGTATGGACTTGGCCATCATGTTCAGCCAGTTTAGCAATTCAAAGCTAGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0012505 GO:0016043 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045927 GO:0048229 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051704 GO:0052689 GO:0060560 GO:0065007 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.69

Weight (kDa)

7.93

Isoelectric Point (pI)

16.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19690 AT2G19690 AT2G19690
fragaria_vesca	FvH4_1g06930
malus_domestica	MD02G1073600.v1.1 MD15G1203100.v1.1
prunus_persica	Prupe.7G214100_v2.0.a1
pyrus_communis	pycom02g05800 pycom15g18030
rosa_chinensis	RchiOBHm_Chr2g0092871
rosa_laevigata	RLG00000016339
rosa_multiflora	Rmu_sc0003262.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148760
rosa_rugosa	Rorug02G0029800
rosa_samantha	Rh2BG076900 Rh2CG079200 Rh2DG074200
rosa_wichuraiana	Rw2G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	124
Acc36I	ACCTGC	1 cut(s)	128
AccII	CGCG	1 cut(s)	28
AciI	CCGC	5 cut(s)	15, 36, 39, 128, 171
AcoI	YGGCCR	1 cut(s)	396
AfaI	GTAC	4 cut(s)	158, 167, 315, 356
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	295, 426
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	11, 106, 430
AluI	AGCT	3 cut(s)	11, 106, 430
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	111, 125, 189, 228
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	183
AsuII	TTCGAA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	123, 137, 176, 215
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	3 cut(s)	2, 32, 190
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	6 cut(s)	36, 39, 112, 126, 190, 229
BlsI	GCNGC	6 cut(s)	37, 40, 113, 127, 191, 230
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	211
BoxI	GACNNNNGTC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	99, 193
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	99, 193
BseGI	GGATG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	2 cut(s)	53, 116
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	4 cut(s)	123, 137, 176, 215
BsgI	GTGCAG	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	186
BsiWI	CGTACG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	13, 353
BspACI	CCGC	5 cut(s)	15, 36, 39, 128, 171
BspANI	GGCC	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	128
BspT104I	TTCGAA	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	99, 193
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	248, 364
BstBI	TTCGAA	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 74, 120, 417
BstNI	CCWGG	1 cut(s)	195
BstPAI	GACNNNNGTC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	4 cut(s)	123, 137, 176, 215
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	2 cut(s)	79, 353
BtsIMutI	CAGTG	2 cut(s)	79, 353
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	226
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	4 cut(s)	157, 166, 314, 355
CviAII	CATG	3 cut(s)	239, 284, 403
CviJI	RGCY	8 cut(s)	11, 106, 114, 189, 205, 398, 411, 430
CviKI_1	RGCY	8 cut(s)	11, 106, 114, 189, 205, 398, 411, 430
CviQI	GTAC	4 cut(s)	157, 166, 314, 355
EaeI	YGGCCR	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	242, 287, 406
FaiI	YATR	7 cut(s)	240, 285, 305, 377, 389, 404, 439
FatI	CATG	3 cut(s)	238, 283, 402
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	6 cut(s)	36, 39, 112, 126, 190, 229
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	6 cut(s)	36, 39, 112, 126, 190, 229
FspBI	CTAG	1 cut(s)	431
FspI	TGCGCA	1 cut(s)	124
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	6 cut(s)	36, 39, 112, 126, 190, 229
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	242, 287, 406
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	2 cut(s)	151, 235
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	3 cut(s)	183, 268, 316
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	3 cut(s)	239, 269, 295
Hpy8I	GTNNAC	3 cut(s)	183, 268, 316
Hpy99I	CGWCG	2 cut(s)	28, 77
HpyAV	CCTTC	2 cut(s)	64, 322
HpyCH4III	ACNGT	2 cut(s)	248, 364
HpyCH4V	TGCA	5 cut(s)	111, 138, 231, 303, 382
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 74, 120, 417
Hsp92II	CATG	3 cut(s)	242, 287, 406
HspAI	GCGC	1 cut(s)	123
LmnI	GCTCC	4 cut(s)	8, 16, 89, 103
LpnPI	CCDG	8 cut(s)	133, 180, 199, 207, 246, 309, 368, 425
Lsp1109I	GCAGC	4 cut(s)	123, 137, 176, 215
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	13, 353
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	3 cut(s)	94, 139, 421
MluI	ACGCGT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	398
MmeI	TCCRAC	2 cut(s)	111, 313
MnlI	CCTC	4 cut(s)	71, 74, 79, 94
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	4 cut(s)	44, 74, 120, 417
NlaIII	CATG	3 cut(s)	242, 287, 406
NmuCI	GTSAC	1 cut(s)	19
NsbI	TGCGCA	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	341
PagI	TCATGA	1 cut(s)	238
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	151, 235
Pfl23II	CGTACG	1 cut(s)	354
PkrI	GCNGC	6 cut(s)	37, 40, 113, 127, 191, 230
PshAI	GACNNNNGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspLI	CGTACG	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	183
RsaI	GTAC	4 cut(s)	158, 167, 315, 356
RsaNI	GTAC	4 cut(s)	157, 166, 314, 355
SacI	GAGCTC	1 cut(s)	13
SatI	GCNGC	6 cut(s)	36, 39, 112, 126, 190, 229
Sau96I	GGNCC	1 cut(s)	183
ScaI	AGTACT	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	2 cut(s)	13, 353
SetI	ASST	6 cut(s)	13, 108, 122, 265, 333, 432
SfaNI	GCATC	1 cut(s)	211
SfuI	TTCGAA	1 cut(s)	341
SinI	GGWCC	1 cut(s)	183
Sse9I	AATT	3 cut(s)	94, 139, 421
SsiI	CCGC	5 cut(s)	15, 36, 39, 128, 171
SspMI	CTAG	1 cut(s)	431
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	248, 364
TaqI	TCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	94, 139, 421
TatI	WGTACW	2 cut(s)	165, 313
TauI	GCSGC	2 cut(s)	38, 41
TfiI	GAWTC	2 cut(s)	151, 235
TscAI	CASTG	2 cut(s)	86, 353
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	4 cut(s)	111, 125, 189, 228
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	46, 227
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	86, 353
VpaK11BI	GGWCC	1 cut(s)	183
XspI	CTAG	1 cut(s)	431
ZrmI	AGTACT	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.