Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013107

Physical Location & Seq

Genomic Coordinates Reverse (-)

6468191 .. 6470466

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG079200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATATCCATCATTCTGGACAATGAACTCGACGATCAAATGAGCGACCTTTATATAAATAGTGTTTTTGACTTTATTGGTATCCTATTGGCAAAGCCAGCCAAGGGTATTTTAGTAATATCAAACAGCGTCATTCTGTCCAATGAAAGAGGAGAACTGGAGCAACGCAAACTGTATTTAACAGACAGGAAAACGCCAGAGAAGACGACGAAGCAATTGAATCTCCCGCAATCGAGAATGTTGGGAGCTGCCGCCGTAACGACGCGTGTCGCCGTCGCTGTCATCTTCCTCGCCTCCGTCGCCCTCTGCTCCAACAACAATTCCGAGGAGTTGTGCAGCAGAACCTGCGCAGCAGAGAACTGCAATTGTGAGCTCCGATGCGTTTTTTTTTCTTTCTTTCTCAAAATTCATTTGTTCTGTGATTTATTAGATATAAATTATTTACTTCTTGTTGTTTTTTTTGATGTTGAAGCGGTTGGGATTCGATACGGGAAGTACTGCGGAGTAGGGTGGACCGGCTGCCCAGGAGAGAAGCCATGTGATGATGTTGACGCTTGCTGCAAGATTCATGATGACTGTGTTGGCAATACAGGTTCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0012505 GO:0016043 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045927 GO:0048229 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051704 GO:0052689 GO:0060560 GO:0065007 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.1

Weight (kDa)

4.95

Isoelectric Point (pI)

23.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19690 AT2G19690 AT2G19690
fragaria_vesca	FvH4_1g06930
malus_domestica	MD02G1073600.v1.1 MD15G1203100.v1.1
prunus_persica	Prupe.7G214100_v2.0.a1
pyrus_communis	pycom02g05800 pycom15g18030
rosa_chinensis	RchiOBHm_Chr2g0092871
rosa_laevigata	RLG00000016339
rosa_multiflora	Rmu_sc0003262.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148760
rosa_rugosa	Rorug02G0029800
rosa_samantha	Rh2BG076900 Rh2CG079200 Rh2DG074200
rosa_wichuraiana	Rw2G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	353
AccII	CGCG	1 cut(s)	265
AciI	CCGC	4 cut(s)	227, 252, 473, 501
AcsI	RAATTY	1 cut(s)	405
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	220, 470
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	2 cut(s)	248, 373
AluI	AGCT	2 cut(s)	248, 373
Alw21I	GWGCWC	1 cut(s)	375
AlwNI	CAGNNNCTG	1 cut(s)	345
ApeKI	GCWGC	5 cut(s)	248, 336, 350, 519, 558
ApoI	RAATTY	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	513
AvaII	GGWCC	1 cut(s)	513
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	5 cut(s)	235, 348, 362, 506, 545
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	2 cut(s)	239, 257
BciT130I	CCWGG	1 cut(s)	525
BciVI	GTATCC	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	6 cut(s)	249, 252, 337, 351, 520, 559
BlsI	GCNGC	6 cut(s)	250, 253, 338, 352, 521, 560
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	368
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	102, 324, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	515
Bse1I	ACTGG	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	3 cut(s)	102, 324, 523
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	2 cut(s)	165, 341
BseXI	GCAGC	5 cut(s)	235, 348, 362, 506, 545
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	4 cut(s)	227, 252, 473, 501
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	3 cut(s)	102, 324, 523
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	174, 578
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	99, 556
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 299, 345
BstNI	CCWGG	1 cut(s)	525
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	523
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	5 cut(s)	235, 348, 362, 506, 545
BstV2I	GAAGAC	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	99, 556
CaiI	CAGNNNCTG	1 cut(s)	345
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	513
CseI	GACGC	3 cut(s)	118, 271, 560
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	2 cut(s)	537, 569
CviJI	RGCY	6 cut(s)	97, 101, 248, 373, 519, 535
CviKI_1	RGCY	6 cut(s)	97, 101, 248, 373, 519, 535
CviQI	GTAC	1 cut(s)	496
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	523
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	540, 572
FaiI	YATR	5 cut(s)	54, 56, 434, 538, 570
FatI	CATG	2 cut(s)	536, 568
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	6 cut(s)	249, 252, 337, 351, 520, 559
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	6 cut(s)	249, 252, 337, 351, 520, 559
FspI	TGCGCA	1 cut(s)	349
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	6 cut(s)	249, 252, 337, 351, 520, 559
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	1 cut(s)	516
HgaI	GACGC	3 cut(s)	118, 271, 560
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	540, 572
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	3 cut(s)	220, 481, 565
HpaII	CCGG	1 cut(s)	516
Hpy166II	GTNNAC	2 cut(s)	513, 550
Hpy188I	TCNGA	2 cut(s)	325, 377
Hpy188III	TCNNGA	3 cut(s)	17, 234, 569
Hpy8I	GTNNAC	2 cut(s)	513, 550
Hpy99I	CGWCG	5 cut(s)	35, 211, 265, 278, 302
HpyCH4III	ACNGT	2 cut(s)	174, 578
HpyCH4V	TGCA	3 cut(s)	336, 363, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 299, 345
Hsp92II	CATG	2 cut(s)	540, 572
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	4 cut(s)	160, 245, 314, 378
Lsp1109I	GCAGC	5 cut(s)	235, 348, 362, 506, 545
LweI	GCATC	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	214, 277
MfeI	CAATTG	2 cut(s)	215, 364
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	5 cut(s)	215, 319, 364, 405, 436
MluI	ACGCGT	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	143, 299, 304, 314, 319
MseI	TTAA	2 cut(s)	179, 601
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	525
MunI	CAATTG	2 cut(s)	215, 364
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	98, 299, 345
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	540, 572
NsbI	TGCGCA	1 cut(s)	349
PagI	TCATGA	1 cut(s)	568
PfeI	GAWTC	3 cut(s)	220, 481, 565
PkrI	GCNGC	6 cut(s)	250, 253, 338, 352, 521, 560
PshAI	GACNNNNGTC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	345
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	179, 601
SatI	GCNGC	6 cut(s)	249, 252, 337, 351, 520, 559
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	513
ScaI	AGTACT	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	5 cut(s)	51, 250, 347, 375, 595
SfaNI	GCATC	1 cut(s)	368
SinI	GGWCC	1 cut(s)	513
Sse9I	AATT	5 cut(s)	215, 319, 364, 405, 436
SsiI	CCGC	4 cut(s)	227, 252, 473, 501
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	174, 578
TaqI	TCGA	3 cut(s)	30, 233, 484
TasI	AATT	5 cut(s)	215, 319, 364, 405, 436
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	220, 481, 565
Tru1I	TTAA	2 cut(s)	179, 601
Tru9I	TTAA	2 cut(s)	179, 601
TseI	GCWGC	5 cut(s)	248, 336, 350, 519, 558
TspDTI	ATGAA	4 cut(s)	39, 159, 398, 557
TspGWI	ACGGA	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	513
XapI	RAATTY	1 cut(s)	405
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.