Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013107

Physical Location & Seq

Genomic Coordinates Reverse (-)

2364883 .. 2367314

Gene Structure 2432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0029800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCAAGCTCAGTGGAGAAGGAGGAGGTTGTGACCTTAGAGCTACCAGCTCCTTCTGGTTGGATGAAGAAGTTTGTGCCCAAGCAAAGTGGAACTCCTAAGAAAAATGAGATCATATTTACGGCTCCAACTGGAGAGGAGATCTCCAACAAAAAACAGCTGGAACAATACCTGAAGGCACACCCTGGTGGCCCTTTAGTGTCAGAGTTTGATTGGGGCACTGGTGAGACCCCAAGGAGATCGGCTAGGATTAGTGAGAAGGTCAAGGCAACTCCATCCCCAGAAAGTGATCCCCCAAAGAAGCGAAGCAGAAAAACATCAGCTTCGAAGAAGGATAGCAAAGAAAAGGAAGCTGCTCCTCAAGGAACTGAGGAGACAAAAGTTAGTCATGTGCAAGATGCTGATAAAGCTGTGAAGGATAACGATACTGAGATGGAAAAGGCTGATGTGAAGGAAAACCAAGATGAGGATAAAGTACAAGATGCAGATACCAAGGCAGAAGTAGCTCCTCCCGAAGAAGCTAAAGTTGATGTAGGAACCAATGAAGGGAAGGAAGTTGAGGGTTCTGGCTCTGGAGAACAAAATGAAAAGAAAGGTTTGGAAGGAGGAAAAGTAGAAGAAAAGGTCGGGCAACCACCGTCTGAGGCGCAGGAAAAGGAAGTGACCGGGGATCAGGGCAAAGCAGACATAGCTACCGCACATGAGGACAAACATGAAGGAGAAGGAGAAGAAAAAGAAAAACATAATGAAAGTGAAACTAAGGAGAAAGAAGCAGCACAAGGGAAGGATGAGGAACATAAGAGTTCAGGTGTTCATGAGTTAGGCAAGAAGATTGAAGCAGCAGTGACTGACAATTGCAGCAACGGCAATGAGGCTGCGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0012505 GO:0016043 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045927 GO:0048229 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051704 GO:0052689 GO:0060560 GO:0065007 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

31.93

Weight (kDa)

5.0

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	9 - 79	1.4e-14	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19690 AT2G19690 AT2G19690
fragaria_vesca	FvH4_1g06930
malus_domestica	MD02G1073600.v1.1 MD15G1203100.v1.1
prunus_persica	Prupe.7G214100_v2.0.a1
pyrus_communis	pycom02g05800 pycom15g18030
rosa_chinensis	RchiOBHm_Chr2g0092871
rosa_laevigata	RLG00000016339
rosa_multiflora	Rmu_sc0003262.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148760
rosa_rugosa	Rorug02G0029800
rosa_samantha	Rh2BG076900 Rh2CG079200 Rh2DG074200
rosa_wichuraiana	Rw2G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	696
AclWI	GGATC	2 cut(s)	284, 678
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	2 cut(s)	466, 546
AgsI	TTSAA	1 cut(s)	836
AjnI	CCWGG	1 cut(s)	184
AleI	CACNNNNGTG	1 cut(s)	186
Alw26I	GTCTC	2 cut(s)	221, 368
AlwI	GGATC	2 cut(s)	284, 678
AlwNI	CAGNNNCTG	1 cut(s)	848
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	5 cut(s)	353, 773, 839, 858, 875
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	667
AsuHPI	GGTGA	1 cut(s)	236
AsuII	TTCGAA	1 cut(s)	326
BaeGI	GKGCMC	2 cut(s)	81, 221
BbvI	GCAGC	5 cut(s)	340, 785, 851, 862, 870
BccI	CCATC	2 cut(s)	283, 427
BceAI	ACGGC	2 cut(s)	138, 880
BciT130I	CCWGG	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	667
BcoDI	GTCTC	2 cut(s)	221, 368
BfaI	CTAG	1 cut(s)	246
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	5 cut(s)	354, 774, 840, 859, 876
BlsI	GCNGC	5 cut(s)	355, 775, 841, 860, 877
Bme1390I	CCNGG	2 cut(s)	186, 667
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	126, 538
BmrFI	CCNGG	2 cut(s)	186, 667
BmsI	GCATC	2 cut(s)	388, 472
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	2 cut(s)	153, 594
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	667
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	4 cut(s)	184, 233, 492, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 546
Bse1I	ACTGG	2 cut(s)	136, 226
Bse3DI	GCAATG	1 cut(s)	874
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	184, 233, 492, 666
BseGI	GGATG	3 cut(s)	69, 275, 793
BseLI	CCNNNNNNNGG	2 cut(s)	466, 546
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	4 cut(s)	24, 360, 420, 633
BseNI	ACTGG	2 cut(s)	136, 226
BseRI	GAGGAG	5 cut(s)	38, 152, 348, 386, 498
BseSI	GKGCMC	2 cut(s)	81, 221
BseXI	GCAGC	5 cut(s)	340, 785, 851, 862, 870
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	666
BslI	CCNNNNNNNGG	2 cut(s)	466, 546
BsmAI	GTCTC	2 cut(s)	221, 368
BsnI	GGCC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	81, 221
Bsp143I	GATC	5 cut(s)	111, 141, 239, 289, 670
BspACI	CCGC	1 cut(s)	696
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	4 cut(s)	23, 361, 421, 634
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	2 cut(s)	126, 538
BspPI	GGATC	2 cut(s)	284, 678
BspT104I	TTCGAA	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	874
BsrI	ACTGG	2 cut(s)	136, 226
BssECI	CCNNGG	4 cut(s)	184, 233, 492, 666
BssMI	GATC	5 cut(s)	111, 141, 239, 289, 670
BssT1I	CCWWGG	2 cut(s)	233, 492
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	639
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	7 cut(s)	10, 37, 99, 369, 429, 642, 759
BstF5I	GGATG	3 cut(s)	69, 275, 793
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	5 cut(s)	114, 144, 242, 292, 673
BstMAI	GTCTC	2 cut(s)	221, 368
BstMBI	GATC	5 cut(s)	111, 141, 239, 289, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 503, 689, 864
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	184, 665
BstSLI	GKGCMC	2 cut(s)	81, 221
BstV1I	GCAGC	5 cut(s)	340, 785, 851, 862, 870
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	69, 275, 793
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	18, 219, 849
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	848
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	476
CspCI	CAANNNNNGTGG	3 cut(s)	29, 70, 105
CviAII	CATG	4 cut(s)	389, 701, 713, 815
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	7 cut(s)	10, 37, 99, 369, 429, 642, 759
DpnI	GATC	5 cut(s)	113, 143, 241, 291, 672
DpnII	GATC	5 cut(s)	111, 141, 239, 289, 670
Eco130I	CCWWGG	2 cut(s)	233, 492
Eco31I	GGTCTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	233, 492
ErhI	CCWWGG	2 cut(s)	233, 492
FaeI	CATG	4 cut(s)	392, 704, 716, 818
FaiI	YATR	8 cut(s)	116, 390, 689, 702, 714, 744, 798, 816
FatI	CATG	4 cut(s)	388, 700, 712, 814
Fnu4HI	GCNGC	5 cut(s)	354, 774, 840, 859, 876
FokI	GGATG	3 cut(s)	76, 262, 800
Fsp4HI	GCNGC	5 cut(s)	354, 774, 840, 859, 876
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	5 cut(s)	354, 774, 840, 859, 876
GsuI	CTGGAG	2 cut(s)	153, 594
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	666
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	4 cut(s)	392, 704, 716, 818
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HpaII	CCGG	1 cut(s)	666
HphI	GGTGA	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	205, 643
Hpy188III	TCNNGA	3 cut(s)	512, 573, 815
HpyCH4III	ACNGT	1 cut(s)	639
HpyCH4V	TGCA	3 cut(s)	394, 485, 858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 503, 689, 864
HpyF3I	CTNAG	7 cut(s)	10, 37, 99, 369, 429, 642, 759
Hsp92II	CATG	4 cut(s)	392, 704, 716, 818
HspAI	GCGC	1 cut(s)	647
Kzo9I	GATC	5 cut(s)	111, 141, 239, 289, 670
LmnI	GCTCC	4 cut(s)	55, 130, 361, 511
Lsp1109I	GCAGC	5 cut(s)	340, 785, 851, 862, 870
LweI	GCATC	2 cut(s)	388, 472
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	31, 661, 844
MalI	GATC	5 cut(s)	113, 143, 241, 291, 672
MboI	GATC	5 cut(s)	111, 141, 239, 289, 670
MboII	GAAGA	6 cut(s)	79, 340, 527, 629, 740, 841
MfeI	CAATTG	1 cut(s)	853
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	81, 221
MluCI	AATT	1 cut(s)	853
MmeI	TCCRAC	3 cut(s)	41, 152, 171
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	1 cut(s)	666
MspR9I	CCNGG	2 cut(s)	186, 667
MunI	CAATTG	1 cut(s)	853
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	407, 503, 689, 864
NciI	CCSGG	1 cut(s)	667
NdeII	GATC	5 cut(s)	111, 141, 239, 289, 670
NlaIII	CATG	4 cut(s)	392, 704, 716, 818
NlaIV	GGNNCC	2 cut(s)	126, 538
NmuCI	GTSAC	3 cut(s)	31, 661, 844
NspV	TTCGAA	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	186
PagI	TCATGA	1 cut(s)	814
PkrI	GCNGC	5 cut(s)	355, 775, 841, 860, 877
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	126, 538
PspPI	GGNCC	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	186
SatI	GCNGC	5 cut(s)	354, 774, 840, 859, 876
Sau3AI	GATC	5 cut(s)	111, 141, 239, 289, 670
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	186, 667
SduI	GDGCHC	2 cut(s)	81, 221
SfaNI	GCATC	2 cut(s)	388, 472
SfuI	TTCGAA	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	1 cut(s)	853
SsiI	CCGC	1 cut(s)	696
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	184, 665
StyI	CCWWGG	2 cut(s)	233, 492
TaaI	ACNGT	1 cut(s)	639
TaqI	TCGA	1 cut(s)	326
TasI	AATT	1 cut(s)	853
TatI	WGTACW	1 cut(s)	475
TscAI	CASTG	3 cut(s)	18, 226, 849
TseFI	GTSAC	3 cut(s)	31, 661, 844
TseI	GCWGC	5 cut(s)	353, 773, 839, 858, 875
Tsp45I	GTSAC	3 cut(s)	31, 661, 844
TspDTI	ATGAA	6 cut(s)	80, 558, 600, 729, 762, 803
TspRI	CASTG	3 cut(s)	18, 226, 849
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.