Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013107

Physical Location & Seq

Genomic Coordinates Reverse (-)

5786901 .. 5789125

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTGGGAGCTGCCGCCGTAACGACGCGTGTCGCCGTCGCTGTCATCTTCCTCGCCTCCGTCGCCCTCTGCTCCAACAACAATTCCGAGGAGTTGTGCAGCAGAACCTGCGCAGCAGAGAACTGCAATTCGGTTGGGATTCGATACGGGAAGTACTGCGGAGTAGGGTGGACCGGCTGCCCAGGAGAGAAGCCATGTGATGACGTTGATGCTTGCTGCAAGATTCATGATGACTGTGTTGGCAATACAGGTATTAATGATGTAAAATGCCATGAGAAGTTCAAGAAATGCATAAAGAAAGTACAAAAATCTGGGAAGGTTGGGTTTTCGAAGCAGTGCCCTTATGAAACAGTTGTGCCGACTATGGTGCAGGGTATGGATTTGGCCATCATGTTCAGCCAGTTTAGCAATTCAAAACTTGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0012505 GO:0016043 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045927 GO:0048229 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051704 GO:0052689 GO:0060560 GO:0065007 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.23

Weight (kDa)

7.92

Isoelectric Point (pI)

10.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19690 AT2G19690 AT2G19690
fragaria_vesca	FvH4_1g06930
malus_domestica	MD02G1073600.v1.1 MD15G1203100.v1.1
prunus_persica	Prupe.7G214100_v2.0.a1
pyrus_communis	pycom02g05800 pycom15g18030
rosa_chinensis	RchiOBHm_Chr2g0092871
rosa_laevigata	RLG00000016339
rosa_multiflora	Rmu_sc0003262.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148760
rosa_rugosa	Rorug02G0029800
rosa_samantha	Rh2BG076900 Rh2CG079200 Rh2DG074200
rosa_wichuraiana	Rw2G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	116
AccII	CGCG	1 cut(s)	28
AciI	CCGC	2 cut(s)	15, 159
AcoI	YGGCCR	1 cut(s)	384
AfaI	GTAC	2 cut(s)	155, 303
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	283, 414, 422
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AlwNI	CAGNNNCTG	1 cut(s)	108
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	5 cut(s)	11, 99, 113, 177, 216
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	171
AsuII	TTCGAA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	386
BbvI	GCAGC	4 cut(s)	111, 125, 164, 203
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	2 cut(s)	2, 20
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	116
BisI	GCNGC	6 cut(s)	12, 15, 100, 114, 178, 217
BlsI	GCNGC	6 cut(s)	13, 16, 101, 115, 179, 218
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	199
BoxI	GACNNNNGTC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	87, 181
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	87, 181
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	4 cut(s)	111, 125, 164, 203
BsgI	GTGCAG	2 cut(s)	118, 389
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	174
BsnI	GGCC	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	341
BspACI	CCGC	2 cut(s)	15, 159
BspANI	GGCC	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	87, 181
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	236, 352
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 108, 405
BstNI	CCWGG	1 cut(s)	183
BstPAI	GACNNNNGTC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	4 cut(s)	111, 125, 164, 203
BsuRI	GGCC	1 cut(s)	386
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	108
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	154, 302
CviAII	CATG	4 cut(s)	195, 227, 272, 391
CviJI	RGCY	5 cut(s)	11, 177, 193, 386, 399
CviKI_1	RGCY	5 cut(s)	11, 177, 193, 386, 399
CviQI	GTAC	2 cut(s)	154, 302
EaeI	YGGCCR	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	293
FaeI	CATG	4 cut(s)	198, 230, 275, 394
FaiI	YATR	9 cut(s)	196, 228, 273, 293, 345, 365, 377, 392, 427
FatI	CATG	4 cut(s)	194, 226, 271, 390
Fnu4HI	GCNGC	6 cut(s)	12, 15, 100, 114, 178, 217
Fsp4HI	GCNGC	6 cut(s)	12, 15, 100, 114, 178, 217
FspI	TGCGCA	1 cut(s)	112
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	6 cut(s)	12, 15, 100, 114, 178, 217
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	4 cut(s)	198, 230, 275, 394
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	2 cut(s)	139, 223
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	227, 283
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	3 cut(s)	28, 41, 65
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	236, 352
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	99, 126, 219, 291, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 108, 405
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	198, 230, 275, 394
HspAI	GCGC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	8, 77
LpnPI	CCDG	8 cut(s)	121, 168, 187, 195, 234, 297, 356, 413
Lsp1109I	GCAGC	4 cut(s)	111, 125, 164, 203
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	3 cut(s)	82, 127, 409
MluI	ACGCGT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	62, 67, 77, 82
Mox20I	TGGCCA	1 cut(s)	386
Mph1103I	ATGCAT	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	1 cut(s)	255
Msp20I	TGGCCA	1 cut(s)	386
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	62, 108, 405
NlaIII	CATG	4 cut(s)	198, 230, 275, 394
NsbI	TGCGCA	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	329
PagI	TCATGA	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	139, 223
PkrI	GCNGC	6 cut(s)	13, 16, 101, 115, 179, 218
PshAI	GACNNNNGTC	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	108
RsaI	GTAC	2 cut(s)	155, 303
RsaNI	GTAC	2 cut(s)	154, 302
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	6 cut(s)	12, 15, 100, 114, 178, 217
Sau96I	GGNCC	1 cut(s)	171
ScaI	AGTACT	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	5 cut(s)	13, 110, 207, 253, 321
SfaNI	GCATC	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	329
SinI	GGWCC	1 cut(s)	171
Sse9I	AATT	3 cut(s)	82, 127, 409
SsiI	CCGC	2 cut(s)	15, 159
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	236, 352
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	142, 329
TasI	AATT	3 cut(s)	82, 127, 409
TatI	WGTACW	2 cut(s)	153, 301
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	139, 223
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	341
TseI	GCWGC	5 cut(s)	11, 99, 113, 177, 216
TspDTI	ATGAA	2 cut(s)	215, 360
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	171
VspI	ATTAAT	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.