Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013107

Physical Location & Seq

Genomic Coordinates Reverse (-)

3904130 .. 3905769

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGTATTTCAGTAAAATCAGACGACGTCATTCCCGCGAATGAGAAACCGACAAAACTATATTACGCGGAAACGCTTCGAGGGCGAAGGCGCCGAGGGATTCAATTTCTGGTAATATCGTTGAGCGCAAAAGCTAAAACGCGAGCGACAACAATGTCGTCAATGTCGCGAGACGCCAGCCTCCGTCGCATGACAAGGTTCGCCGCCGCATTTTCCGTCGTTATCTTCTCCTTCGCCGTCGTCGCCCACTGTTCCAACAATGATTCCGAGGTGACTTGCAGCCGGATCTGCGTGGCGGAGAACTGTAATTCGGTTGGGATTCGATACGGGAAGTACTGCGGGGTAGGGTGGACCGGCTGCCCGGGAGAGCAGCCCTGCGATGATCTTGATGCTTGCTGCAAGATTCATGACGATTGTGTTGGCAAAAAAGGTATGACCGACATTAAATGCCATGAGAAGTTCAAGCGCTGCATAAAGAAAGTACATAAATCTGGGAAGGTTGGATTTTCTAAGCAGTGTCCTTATGATACCGCTGTGCCTACTATGGTACAGGGTATGGATTTGGCTATCTTACTGAGCCAGTTTGGTAACTCAAAGCTTGAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0012505 GO:0016043 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045927 GO:0048229 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051704 GO:0052689 GO:0060560 GO:0065007 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.21

Weight (kDa)

9.19

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19690 AT2G19690 AT2G19690
fragaria_vesca	FvH4_1g06930
malus_domestica	MD02G1073600.v1.1 MD15G1203100.v1.1
prunus_persica	Prupe.7G214100_v2.0.a1
pyrus_communis	pycom02g05800 pycom15g18030
rosa_chinensis	RchiOBHm_Chr2g0092871
rosa_laevigata	RLG00000016339
rosa_multiflora	Rmu_sc0003262.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148760
rosa_rugosa	Rorug02G0029800
rosa_samantha	Rh2BG076900 Rh2CG079200 Rh2DG074200
rosa_wichuraiana	Rw2G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	154
AatII	GACGTC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	90
AccII	CGCG	4 cut(s)	38, 68, 142, 169
AciI	CCGC	7 cut(s)	36, 68, 204, 207, 296, 339, 531
AclWI	GGATC	1 cut(s)	293
AcyI	GRCGYC	3 cut(s)	27, 91, 174
AfaI	GTAC	3 cut(s)	335, 483, 549
AfeI	AGCGCT	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	104, 463, 602
AluBI	AGCT	2 cut(s)	134, 598
AluI	AGCT	2 cut(s)	134, 598
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	361
Aor51HI	AGCGCT	1 cut(s)	467
ApeKI	GCWGC	5 cut(s)	279, 357, 370, 396, 468
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	3 cut(s)	93, 128, 468
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	2 cut(s)	362, 363
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	351
BaeI	ACNNNNGTAYC	2 cut(s)	519, 552
BanI	GGYRCC	1 cut(s)	90
BbvI	GCAGC	5 cut(s)	291, 344, 382, 383, 455
BceAI	ACGGC	1 cut(s)	221
BcnI	CCSGG	2 cut(s)	362, 363
BcoDI	GTCTC	1 cut(s)	165
BfoI	RGCGCY	2 cut(s)	94, 469
BisI	GCNGC	7 cut(s)	204, 207, 280, 358, 371, 397, 469
BlsI	GCNGC	7 cut(s)	205, 208, 281, 359, 372, 398, 470
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	362, 363
Bme18I	GGWCC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	362, 363
BmsI	GCATC	1 cut(s)	379
BpuMI	CCSGG	2 cut(s)	362, 363
BsaHI	GRCGYC	3 cut(s)	27, 91, 174
BsaJI	CCNNGG	3 cut(s)	94, 267, 361
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	580
BseDI	CCNNGG	3 cut(s)	94, 267, 361
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	580
BseXI	GCAGC	5 cut(s)	291, 344, 382, 383, 455
Bsh1236I	CGCG	4 cut(s)	38, 68, 142, 169
BshNI	GGYRCC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	3 cut(s)	283, 354, 362
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	285, 382
Bsp68I	TCGCGA	1 cut(s)	169
BspACI	CCGC	7 cut(s)	36, 68, 204, 207, 296, 339, 531
BspCNI	CTCAG	1 cut(s)	567
BspFNI	CGCG	4 cut(s)	38, 68, 142, 169
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	580
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	3 cut(s)	94, 267, 361
BssMI	GATC	2 cut(s)	285, 382
BssNI	GRCGYC	3 cut(s)	27, 91, 174
Bst4CI	ACNGT	3 cut(s)	251, 305, 606
BstACI	GRCGYC	3 cut(s)	27, 91, 174
BstC8I	GCNNGC	3 cut(s)	144, 178, 394
BstDEI	CTNAG	2 cut(s)	510, 575
BstFNI	CGCG	4 cut(s)	38, 68, 142, 169
BstH2I	RGCGCY	2 cut(s)	94, 469
BstHHI	GCGC	3 cut(s)	93, 128, 468
BstKTI	GATC	2 cut(s)	288, 385
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	285, 382
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 186, 242, 288
BstSCI	CCNGG	2 cut(s)	360, 361
BstUI	CGCG	4 cut(s)	38, 68, 142, 169
BstV1I	GCAGC	5 cut(s)	291, 344, 382, 383, 455
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	247, 521
BtuMI	TCGCGA	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	144, 178, 394
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	3 cut(s)	93, 128, 468
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	351
Cfr9I	CCCGGG	1 cut(s)	361
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	334, 482, 548
CviAII	CATG	3 cut(s)	190, 407, 452
CviJI	RGCY	8 cut(s)	134, 180, 282, 357, 373, 566, 579, 598
CviKI_1	RGCY	8 cut(s)	134, 180, 282, 357, 373, 566, 579, 598
CviQI	GTAC	3 cut(s)	334, 482, 548
DdeI	CTNAG	2 cut(s)	510, 575
DinI	GGCGCC	1 cut(s)	92
DpnI	GATC	2 cut(s)	287, 384
DpnII	GATC	2 cut(s)	285, 382
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	361
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	3 cut(s)	193, 410, 455
FatI	CATG	3 cut(s)	189, 406, 451
FauI	CCCGC	2 cut(s)	43, 332
Fnu4HI	GCNGC	7 cut(s)	204, 207, 280, 358, 371, 397, 469
Fsp4HI	GCNGC	7 cut(s)	204, 207, 280, 358, 371, 397, 469
GlaI	GCGC	3 cut(s)	92, 127, 467
GluI	GCNGC	7 cut(s)	204, 207, 280, 358, 371, 397, 469
HaeII	RGCGCY	2 cut(s)	94, 469
HapII	CCGG	3 cut(s)	283, 354, 362
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	3 cut(s)	93, 128, 468
Hin1I	GRCGYC	3 cut(s)	27, 91, 174
Hin1II	CATG	3 cut(s)	193, 410, 455
Hin6I	GCGC	3 cut(s)	91, 126, 466
HinP1I	GCGC	3 cut(s)	91, 126, 466
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	4 cut(s)	100, 263, 319, 403
HpaII	CCGG	3 cut(s)	283, 354, 362
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	2 cut(s)	22, 268
Hpy188III	TCNNGA	3 cut(s)	168, 386, 407
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	5 cut(s)	29, 189, 221, 242, 245
HpyAV	CCTTC	3 cut(s)	81, 241, 490
HpyCH4III	ACNGT	3 cut(s)	251, 305, 606
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	279, 399, 471
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 186, 242, 288
HpyF3I	CTNAG	2 cut(s)	510, 575
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	3 cut(s)	27, 91, 174
Hsp92II	CATG	3 cut(s)	193, 410, 455
HspAI	GCGC	3 cut(s)	91, 126, 466
KasI	GGCGCC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	285, 382
LpnPI	CCDG	9 cut(s)	95, 190, 296, 367, 375, 388, 477, 536, 593
Lsp1109I	GCAGC	5 cut(s)	291, 344, 382, 383, 455
LweI	GCATC	1 cut(s)	379
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	271, 587
MalI	GATC	2 cut(s)	287, 384
MboI	GATC	2 cut(s)	285, 382
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	2 cut(s)	104, 307
Mly113I	GGCGCC	1 cut(s)	91
MmeI	TCCRAC	2 cut(s)	279, 481
MnlI	CCTC	4 cut(s)	74, 89, 191, 262
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	3 cut(s)	283, 354, 362
MspR9I	CCNGG	2 cut(s)	362, 363
MvnI	CGCG	4 cut(s)	38, 68, 142, 169
MwoI	GCNNNNNNNGC	4 cut(s)	82, 186, 242, 288
NarI	GGCGCC	1 cut(s)	91
NciI	CCSGG	2 cut(s)	362, 363
NdeII	GATC	2 cut(s)	285, 382
NlaIII	CATG	3 cut(s)	193, 410, 455
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	271
NruI	TCGCGA	1 cut(s)	169
PagI	TCATGA	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	4 cut(s)	100, 263, 319, 403
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	7 cut(s)	205, 208, 281, 359, 372, 398, 470
PluTI	GGCGCC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	26
RruI	TCGCGA	1 cut(s)	169
RsaI	GTAC	3 cut(s)	335, 483, 549
RsaNI	GTAC	3 cut(s)	334, 482, 548
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	7 cut(s)	204, 207, 280, 358, 371, 397, 469
Sau3AI	GATC	2 cut(s)	285, 382
Sau96I	GGNCC	1 cut(s)	351
ScaI	AGTACT	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	362, 363
SetI	ASST	7 cut(s)	30, 136, 200, 273, 433, 501, 600
SfaNI	GCATC	1 cut(s)	379
SfoI	GGCGCC	1 cut(s)	92
SinI	GGWCC	1 cut(s)	351
SmaI	CCCGGG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	104, 307
SsiI	CCGC	7 cut(s)	36, 68, 204, 207, 296, 339, 531
SspDI	GGCGCC	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	360, 361
TaaI	ACNGT	3 cut(s)	251, 305, 606
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	79, 322
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	2 cut(s)	104, 307
TatI	WGTACW	2 cut(s)	333, 481
TauI	GCSGC	2 cut(s)	206, 209
TfiI	GAWTC	4 cut(s)	100, 263, 319, 403
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	254, 521
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	5 cut(s)	279, 357, 370, 396, 468
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	2 cut(s)	173, 205
TspMI	CCCGGG	1 cut(s)	361
TspRI	CASTG	2 cut(s)	254, 521
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	351
XmaI	CCCGGG	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	75
ZraI	GACGTC	1 cut(s)	28
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.