AT2G19790

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013831
Physical Location & Seq
Forward (+)
8527175 .. 8528685
1511 bp
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UTR
Exon/CDS
Intron
AT2G19790.1

Sequence Viewer

Length: 432 bp
ATGGGAATAAGGTTCATATTGATGGTGAACAAGCAAGGCCAGACTCGTCTTGCTCAGTACTACGAATGGCTCACTCTCGAGGAACGTCGCGCTCTCGAAGGCGAAATCGTCCGTAAATGCCTCGCTCGCAACGACCAACAGTGTTCGTTTGTCGAGCATCGCAACTACAAGATAGTCTACAGGCGTTACGCATCTCTCTTCTTCATGGTTGGGGTTGATGACGATGAAAACGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGAGACAATGGACAAGCATTTTGGAAATGTGTGTGAGCTAGACATAATGTTCCATCTGGAGAAAGCTCATTTCATGCTGGAAGAAATGGTGATGAATGGTTGCATTGTGGAGACAAGCAAAGCCAACATACTTTCACCTATACAACTTATGGACAAAGCCCATTAA

Protein Analysis

143

Amino Acids

16.92

Weight (kDa)

5.49

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 3 - 142 6.9e-47 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013831)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19790
fragaria_vesca FvH4_1g06580 FvH4_5g22770
malus_domestica MD02G1069000.v1.1 MD15G1200600.v1.1
prunus_persica Prupe.7G216600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0092321
rosa_laevigata RLG00000016297
rosa_multiflora Rmu_sc0003289.1_g000015 Rmu_sc0003289.1_g000018
rosa_roxburghii Rroxscaffold_2G00149260
rosa_rugosa Rorug02G0024700
rosa_samantha Rh2AG070700 Rh2BG070200 Rh2CG071400 Rh2DG069200
rosa_wichuraiana Rw2G006160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 90
AfaI GTAC 1 cut(s) 59
AluBI AGCT 3 cut(s) 235, 304, 332
AluI AGCT 3 cut(s) 235, 304, 332
Alw26I GTCTC 2 cut(s) 263, 371
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspLEI GCGC 1 cut(s) 92
AsuHPI GGTGA 3 cut(s) 37, 367, 393
AvaI CYCGRG 1 cut(s) 77
BccI CCATC 2 cut(s) 16, 327
BcoDI GTCTC 2 cut(s) 263, 371
BfaI CTAG 2 cut(s) 245, 305
BfmI CTRYAG 1 cut(s) 178
BmcAI AGTACT 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 77
BmsI GCATC 2 cut(s) 166, 200
BpmI CTGGAG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 263, 371
BsnI GGCC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 77
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 127, 237
BstDEI CTNAG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstMAI GTCTC 2 cut(s) 263, 371
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 2 cut(s) 127, 237
CfoI GCGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 58
CviAII CATG 2 cut(s) 205, 340
CviJI RGCY 7 cut(s) 39, 70, 235, 304, 332, 389, 425
CviKI_1 RGCY 7 cut(s) 39, 70, 235, 304, 332, 389, 425
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 77
FaeI CATG 2 cut(s) 208, 343
FaiI YATR 8 cut(s) 17, 206, 254, 311, 341, 395, 407, 416
FatI CATG 2 cut(s) 204, 339
FblI GTMKAC 1 cut(s) 177
FspBI CTAG 2 cut(s) 245, 305
GlaI GCGC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 39
HhaI GCGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 208, 343
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 2 cut(s) 43, 241
HphI GGTGA 3 cut(s) 37, 367, 393
Hpy166II GTNNAC 2 cut(s) 28, 178
Hpy188III TCNNGA 5 cut(s) 77, 95, 245, 268, 323
Hpy8I GTNNAC 2 cut(s) 28, 178
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 2 cut(s) 208, 343
HspAI GCGC 1 cut(s) 90
LpnPI CCDG 5 cut(s) 53, 166, 221, 308, 329
LweI GCATC 2 cut(s) 166, 200
MaeI CTAG 2 cut(s) 245, 305
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 185
MboII GAAGA 3 cut(s) 190, 193, 359
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 2 cut(s) 73, 131
MseI TTAA 1 cut(s) 430
MslI CAYNNNNRTG 1 cut(s) 20
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 126
NlaIII CATG 2 cut(s) 208, 343
PaeR7I CTCGAG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 228
PfeI GAWTC 1 cut(s) 241
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 430
ScaI AGTACT 1 cut(s) 59
SchI GAGTC 1 cut(s) 37
SetI ASST 6 cut(s) 14, 88, 237, 306, 334, 406
SfaNI GCATC 2 cut(s) 166, 200
SfcI CTRYAG 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SspMI CTAG 2 cut(s) 245, 305
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 1 cut(s) 88
TaqI TCGA 4 cut(s) 78, 96, 153, 267
TatI WGTACW 1 cut(s) 57
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 430
Tru9I TTAA 1 cut(s) 430
TscAI CASTG 1 cut(s) 146
TspDTI ATGAA 6 cut(s) 4, 193, 240, 241, 328, 374
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 146
XbaI TCTAGA 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 2 cut(s) 245, 305
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.