Prupe.7G216600_v2.0.a1

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013831
Physical Location & Seq
Reverse (-)
19571889 .. 19574255
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G216600.1

Sequence Viewer

Length: 432 bp
ATGGGGATCAGATTCATATTGATGGTGAACAAGCAGGGGCAGACACGTCTTGCCCAATACTACGAATATCTCACTCTCGAAGAAAGGCGAGCTCTTGAAGCTGAGATCGTCCGCAAATGCCTCGCCCGCACCGAGCAACAGTGTTCATTTGTTGAGCACCGGAACTACAAAATTGTGTACAGGCGCTATGCTTCGTTGTTTTTCCTGGTTGGAGTTGATAATGATGAAAATGAGCTTGCAATTTTGGAATTCATACATCTGTTAGTTGAAACCATGGACCGCCATTTTGGCAATGTGTGTGAACTAGACATCATGTTCCATTTGGAGAAAGCGCATTTCATGCTGGAAGAAATGGTCATGAATGGGTGTATTGTCGAGACAAGCAAGTCTAGCATTCTGGCGCCAATACAACTGATGGATAAAATGTCTTGA

Protein Analysis

144

Amino Acids

16.9

Weight (kDa)

5.54

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013831)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19790
fragaria_vesca FvH4_1g06580 FvH4_5g22770
malus_domestica MD02G1069000.v1.1 MD15G1200600.v1.1
prunus_persica Prupe.7G216600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0092321
rosa_laevigata RLG00000016297
rosa_multiflora Rmu_sc0003289.1_g000015 Rmu_sc0003289.1_g000018
rosa_roxburghii Rroxscaffold_2G00149260
rosa_rugosa Rorug02G0024700
rosa_samantha Rh2AG070700 Rh2BG070200 Rh2CG071400 Rh2DG069200
rosa_wichuraiana Rw2G006160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 400
AciI CCGC 3 cut(s) 112, 127, 280
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 44
AgsI TTSAA 2 cut(s) 98, 269
AjiI CACGTC 1 cut(s) 47
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 92, 101, 235
AluI AGCT 3 cut(s) 92, 101, 235
Alw21I GWGCWC 2 cut(s) 94, 159
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspLEI GCGC 3 cut(s) 186, 334, 403
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 400
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 2 cut(s) 94, 159
BccI CCATC 2 cut(s) 16, 409
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 2 cut(s) 305, 390
BfoI RGCGCY 2 cut(s) 187, 404
BglI GCCNNNNNGGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 277
BmgBI CACGTC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 159
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 400
BsiHKAI GWGCWC 2 cut(s) 94, 159
BsiSI CCGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 94, 159
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 2 cut(s) 6, 105
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 3 cut(s) 112, 127, 280
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 6, 105
BssNI GRCGYC 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 401
BstAPI GCANNNNNTGC 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 3 cut(s) 90, 127, 237
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 273
BstH2I RGCGCY 2 cut(s) 187, 404
BstHHI GCGC 3 cut(s) 186, 334, 403
BstKTI GATC 2 cut(s) 9, 108
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 2 cut(s) 6, 105
BstMWI GCNNNNNNNGC 5 cut(s) 98, 126, 288, 340, 390
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 3 cut(s) 90, 127, 237
CciI TCATGA 1 cut(s) 357
CfoI GCGC 3 cut(s) 186, 334, 403
Cfr13I GGNCC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 178
CviAII CATG 4 cut(s) 274, 313, 340, 358
CviJI RGCY 3 cut(s) 92, 101, 235
CviKI_1 RGCY 3 cut(s) 92, 101, 235
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 102
DinI GGCGCC 1 cut(s) 402
DpnI GATC 2 cut(s) 8, 107
DpnII GATC 2 cut(s) 6, 105
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 402
EheI GGCGCC 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 4 cut(s) 277, 316, 343, 361
FaiI YATR 7 cut(s) 17, 189, 254, 275, 314, 341, 359
FatI CATG 4 cut(s) 273, 312, 339, 357
FauI CCCGC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 94
FspBI CTAG 2 cut(s) 305, 390
GlaI GCGC 3 cut(s) 185, 333, 402
HaeII RGCGCY 2 cut(s) 187, 404
HapII CCGG 1 cut(s) 160
HhaI GCGC 3 cut(s) 186, 334, 403
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 4 cut(s) 277, 316, 343, 361
Hin6I GCGC 3 cut(s) 184, 332, 401
HinP1I GCGC 3 cut(s) 184, 332, 401
HinfI GANTC 1 cut(s) 12
HpaII CCGG 1 cut(s) 160
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 28, 178, 302
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 5 cut(s) 77, 95, 358, 376, 429
Hpy8I GTNNAC 3 cut(s) 28, 178, 302
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 126, 288, 340, 390
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 4 cut(s) 277, 316, 343, 361
HspAI GCGC 3 cut(s) 184, 332, 401
KasI GGCGCC 1 cut(s) 400
Kzo9I GATC 2 cut(s) 6, 105
LpnPI CCDG 7 cut(s) 20, 166, 173, 191, 218, 329, 383
MaeI CTAG 2 cut(s) 305, 390
MaeII ACGT 1 cut(s) 46
MalI GATC 2 cut(s) 8, 107
MboI GATC 2 cut(s) 6, 105
MboII GAAGA 2 cut(s) 92, 359
MhlI GDGCHC 2 cut(s) 94, 159
MluCI AATT 3 cut(s) 171, 240, 248
Mly113I GGCGCC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 5 cut(s) 98, 126, 288, 340, 390
NarI GGCGCC 1 cut(s) 401
NcoI CCATGG 1 cut(s) 273
NdeII GATC 2 cut(s) 6, 105
NlaIII CATG 4 cut(s) 277, 316, 343, 361
NlaIV GGNNCC 1 cut(s) 402
PagI TCATGA 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 12
PluTI GGCGCC 1 cut(s) 404
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 277
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 20
SacI GAGCTC 1 cut(s) 94
Sau3AI GATC 2 cut(s) 6, 105
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 2 cut(s) 94, 159
SetI ASST 4 cut(s) 49, 94, 103, 237
SfoI GGCGCC 1 cut(s) 402
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 3 cut(s) 171, 240, 248
SsiI CCGC 3 cut(s) 112, 127, 280
SspDI GGCGCC 1 cut(s) 400
SspMI CTAG 2 cut(s) 305, 390
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 78, 375
TasI AATT 3 cut(s) 171, 240, 248
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 1 cut(s) 12
TscAI CASTG 1 cut(s) 146
TspDTI ATGAA 6 cut(s) 4, 135, 240, 241, 328, 374
TspRI CASTG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 248
XspI CTAG 2 cut(s) 305, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.