Rh2BG070200

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013831
Physical Location & Seq
Forward (+)
5291244 .. 5292732
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG070200.1

Sequence Viewer

Length: 411 bp
ATGGTGAACAAACAAGGGCAGACCCGTCTTGCCCAATACTACGAATATCTCACCCTCGAAGAAAGGCGAGCTCTTGAAGCTGAAATCGTCCGCAAATGCCTCGCCCGCAACGAGCAACAGTGTTCATTTGTCGAGCACCGGAATTACAAAATTGTCTACAGACGCTATGCTTCACTGTTTTTCCTGGTTGGAGTAGACAATGATGAAAATGAGCTTGCAATCTTGGAATTCATACATCTGTTAGTTGAAACTATGGACCGCCATTTCGGCAATGTGTGTGAACTAGACATCATGTTCCATTTGGAGAAAGCGCATTTCATGCTGGAGGAAATGGTCATGAATGGGTGTATCGTCGAGACAAGCAAGACTAACATCCTGGCACCGATACAGCTGATGGACAAGACCTATTGA

Protein Analysis

136

Amino Acids

16.17

Weight (kDa)

5.36

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 2 - 134 9.4e-44 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013831)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19790
fragaria_vesca FvH4_1g06580 FvH4_5g22770
malus_domestica MD02G1069000.v1.1 MD15G1200600.v1.1
prunus_persica Prupe.7G216600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0092321
rosa_laevigata RLG00000016297
rosa_multiflora Rmu_sc0003289.1_g000015 Rmu_sc0003289.1_g000018
rosa_roxburghii Rroxscaffold_2G00149260
rosa_rugosa Rorug02G0024700
rosa_samantha Rh2AG070700 Rh2BG070200 Rh2CG071400 Rh2DG069200
rosa_wichuraiana Rw2G006160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 379
AccI GTMKAC 2 cut(s) 156, 195
AciI CCGC 3 cut(s) 91, 106, 259
AcsI RAATTY 1 cut(s) 227
AgsI TTSAA 2 cut(s) 77, 248
AjnI CCWGG 2 cut(s) 183, 375
AluBI AGCT 4 cut(s) 71, 80, 214, 391
AluI AGCT 4 cut(s) 71, 80, 214, 391
Alw21I GWGCWC 2 cut(s) 73, 138
Alw26I GTCTC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 227
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 16, 43
AvaII GGWCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 2 cut(s) 73, 138
BccI CCATC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 2 cut(s) 185, 377
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 267
Bme1390I CCNGG 2 cut(s) 185, 377
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 185, 377
BpmI CTGGAG 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 185, 377
BseGI GGATG 1 cut(s) 372
BseMI GCAATG 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 73, 138
BsiSI CCGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 73, 138
BspACI CCGC 3 cut(s) 91, 106, 259
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 277
Bst2UI CCWGG 2 cut(s) 185, 377
Bst4CI ACNGT 2 cut(s) 120, 177
BstAPI GCANNNNNTGC 1 cut(s) 319
BstC8I GCNNGC 3 cut(s) 69, 106, 216
BstF5I GGATG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 350
BstMWI GCNNNNNNNGC 4 cut(s) 77, 105, 267, 319
BstNI CCWGG 2 cut(s) 185, 377
BstSCI CCNGG 2 cut(s) 183, 375
BstSFI CTRYAG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 125, 173
Cac8I GCNNGC 3 cut(s) 69, 106, 216
CciI TCATGA 1 cut(s) 336
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 171
CviAII CATG 3 cut(s) 292, 319, 337
CviJI RGCY 4 cut(s) 71, 80, 214, 391
CviKI_1 RGCY 4 cut(s) 71, 80, 214, 391
Ecl136II GAGCTC 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 183, 375
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 3 cut(s) 295, 322, 340
FaiI YATR 6 cut(s) 168, 233, 254, 293, 320, 338
FatI CATG 3 cut(s) 291, 318, 336
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 2 cut(s) 156, 195
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 73
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 344
HapII CCGG 1 cut(s) 139
HgaI GACGC 1 cut(s) 171
HhaI GCGC 1 cut(s) 313
Hin1II CATG 3 cut(s) 295, 322, 340
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HpaII CCGG 1 cut(s) 139
HphI GGTGA 2 cut(s) 16, 43
Hpy166II GTNNAC 4 cut(s) 7, 157, 196, 281
Hpy188III TCNNGA 3 cut(s) 74, 337, 355
Hpy8I GTNNAC 4 cut(s) 7, 157, 196, 281
Hpy99I CGWCG 1 cut(s) 356
HpyCH4III ACNGT 2 cut(s) 120, 177
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 105, 267, 319
Hsp92II CATG 3 cut(s) 295, 322, 340
HspAI GCGC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 152, 170, 197, 308, 362, 389
MaeI CTAG 1 cut(s) 284
MboII GAAGA 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 73, 138
MluCI AATT 3 cut(s) 142, 150, 227
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 3 cut(s) 65, 110, 319
MspA1I CMGCKG 1 cut(s) 391
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 185, 377
MvaI CCWGG 2 cut(s) 185, 377
MwoI GCNNNNNNNGC 4 cut(s) 77, 105, 267, 319
NlaIII CATG 3 cut(s) 295, 322, 340
NlaIV GGNNCC 1 cut(s) 381
PagI TCATGA 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 183, 375
PspGI CCWGG 2 cut(s) 183, 375
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 391
SacI GAGCTC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 185, 377
SduI GDGCHC 2 cut(s) 73, 138
SetI ASST 5 cut(s) 73, 82, 216, 393, 407
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 256
Sse9I AATT 3 cut(s) 142, 150, 227
SsiI CCGC 3 cut(s) 91, 106, 259
SspMI CTAG 1 cut(s) 284
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 183, 375
TaaI ACNGT 2 cut(s) 120, 177
TaqI TCGA 3 cut(s) 57, 132, 354
TasI AATT 3 cut(s) 142, 150, 227
TscAI CASTG 2 cut(s) 125, 180
TspDTI ATGAA 5 cut(s) 114, 219, 220, 307, 353
TspRI CASTG 2 cut(s) 125, 180
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 227
XmiI GTMKAC 2 cut(s) 156, 195
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.