Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013831

Physical Location & Seq

Genomic Coordinates Reverse (-)

14089246 .. 14089682

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGGATCAGATTCATATTGATGGTGAACAAACAAGGGCAGACCCGTCTTGCACAATACTACGAACATTTCACCCTCCAAGAAAGGCGAGCTCTTGAAGCTGAAATCGTCCGAAAATGCCTCGCTCGCAACGAACAACAGTGTTCATTTGTTGAGCTCCGGAATTACAAAATTGTTTACAGGCGGTATGTTTCACTTTTTTTCCTTGTTGGAGTAGACAATGATGAAAATGAGCTTGCAATTTTGGAATTCATTCATCTGATAGCTGAAACCATGGACCGCCATTTCGGCAACGTCTGTGAACTAGACATCATGTTCCATTTGGAGAGAGCGCATTTCATGCTGGACGAAATGGTCTTGAATGGGTGTATCGTTGAGACAAGCAAGACTAACATCCTGGCACCAATACAGCAGATGGACAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0012505 GO:0016020 GO:0030117 GO:0030119 GO:0030124 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

143

Amino Acids

16.84

Weight (kDa)

5.72

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	3 - 141	1.6e-45	Clathrin adaptor complex small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19790
fragaria_vesca	FvH4_1g06580 FvH4_5g22770
malus_domestica	MD02G1069000.v1.1 MD15G1200600.v1.1
prunus_persica	Prupe.7G216600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092321
rosa_laevigata	RLG00000016297
rosa_multiflora	Rmu_sc0003289.1_g000015 Rmu_sc0003289.1_g000018
rosa_roxburghii	Rroxscaffold_2G00149260
rosa_rugosa	Rorug02G0024700
rosa_samantha	Rh2AG070700 Rh2BG070200 Rh2CG071400 Rh2DG069200
rosa_wichuraiana	Rw2G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	216
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	2 cut(s)	184, 280
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	98, 361
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	5 cut(s)	92, 101, 157, 235, 266
AluI	AGCT	5 cut(s)	92, 101, 157, 235, 266
Alw21I	GWGCWC	2 cut(s)	94, 159
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	159
ApoI	RAATTY	1 cut(s)	248
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	37, 64
AvaII	GGWCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	400
BanII	GRGCYC	2 cut(s)	94, 159
Bbv12I	GWGCWC	2 cut(s)	94, 159
BccI	CCATC	2 cut(s)	16, 409
BciT130I	CCWGG	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	94, 159
BsiSI	CCGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	94, 159
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	2 cut(s)	184, 280
BspEI	TCCGGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	90, 127, 237
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 126, 288, 340
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	3 cut(s)	90, 127, 237
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	3 cut(s)	274, 313, 340
CviJI	RGCY	5 cut(s)	92, 101, 157, 235, 266
CviKI_1	RGCY	5 cut(s)	92, 101, 157, 235, 266
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Ecl136II	GAGCTC	2 cut(s)	92, 157
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	2 cut(s)	94, 159
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	2 cut(s)	92, 157
EcoICRI	GAGCTC	2 cut(s)	92, 157
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	94, 159
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	277, 316, 343
FaiI	YATR	6 cut(s)	17, 189, 275, 314, 341, 427
FatI	CATG	3 cut(s)	273, 312, 339
FblI	GTMKAC	1 cut(s)	216
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	2 cut(s)	94, 159
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	333
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	3 cut(s)	277, 316, 343
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	2 cut(s)	37, 64
Hpy166II	GTNNAC	4 cut(s)	28, 178, 217, 302
Hpy188I	TCNGA	3 cut(s)	11, 113, 261
Hpy188III	TCNNGA	3 cut(s)	95, 160, 358
Hpy8I	GTNNAC	4 cut(s)	28, 178, 217, 302
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	2 cut(s)	53, 239
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 126, 288, 340
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	277, 316, 343
HspAI	GCGC	1 cut(s)	332
Kpn2I	TCCGGA	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	5 cut(s)	166, 173, 329, 383, 410
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	294
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MhlI	GDGCHC	2 cut(s)	94, 159
MluCI	AATT	4 cut(s)	163, 171, 240, 248
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	2 cut(s)	86, 131
MroI	TCCGGA	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	4 cut(s)	98, 126, 288, 340
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	3 cut(s)	277, 316, 343
NlaIV	GGNNCC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	12
Psp124BI	GAGCTC	2 cut(s)	94, 159
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	2 cut(s)	94, 159
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	2 cut(s)	94, 159
SetI	ASST	6 cut(s)	94, 103, 159, 237, 268, 297
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	4 cut(s)	163, 171, 240, 248
SsiI	CCGC	2 cut(s)	184, 280
SspMI	CTAG	1 cut(s)	305
SstI	GAGCTC	2 cut(s)	94, 159
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	297
TasI	AATT	4 cut(s)	163, 171, 240, 248
TfiI	GAWTC	1 cut(s)	12
TscAI	CASTG	1 cut(s)	146
TspDTI	ATGAA	6 cut(s)	4, 135, 240, 241, 245, 328
TspRI	CASTG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.