Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rif1_N | PF12231 | 19 - 301 | 2e-33 | Rap1-interacting factor 1 N terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1785, 2649 |
| AccB1I | GGYRCC | 2 cut(s) | 541, 2370 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3013 |
| AccI | GTMKAC | 2 cut(s) | 1170, 2384 |
| AccII | CGCG | 3 cut(s) | 137, 417, 419 |
| AccIII | TCCGGA | 1 cut(s) | 3372 |
| AciI | CCGC | 3 cut(s) | 203, 419, 760 |
| AclWI | GGATC | 8 cut(s) | 173, 615, 1018, 1196, 1239, 1725, 1738, 2445 |
| AcoI | YGGCCR | 2 cut(s) | 246, 2580 |
| AcsI | RAATTY | 4 cut(s) | 261, 816, 1952, 2488 |
| AcuI | CTGAAG | 2 cut(s) | 1667, 2484 |
| AcvI | CACGTG | 1 cut(s) | 1104 |
| AdeI | CACNNNGTG | 1 cut(s) | 1107 |
| AfaI | GTAC | 6 cut(s) | 660, 958, 1869, 1906, 2012, 2305 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1049, 1796, 3013 |
| AflII | CTTAAG | 2 cut(s) | 1510, 1615 |
| AflIII | ACRYGT | 2 cut(s) | 1101, 2399 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2197 |
| AhlI | ACTAGT | 3 cut(s) | 2552, 2789, 3160 |
| AjnI | CCWGG | 8 cut(s) | 867, 875, 1161, 1302, 1977, 2026, 2883, 3012 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 272, 304 |
| AleI | CACNNNNGTG | 1 cut(s) | 1883 |
| Alw21I | GWGCWC | 2 cut(s) | 146, 3265 |
| Alw26I | GTCTC | 8 cut(s) | 534, 576, 777, 1448, 1991, 2853, 3022, 3250 |
| AlwI | GGATC | 8 cut(s) | 173, 615, 1018, 1196, 1239, 1725, 1738, 2445 |
| Ama87I | CYCGRG | 1 cut(s) | 821 |
| Aor13HI | TCCGGA | 1 cut(s) | 3372 |
| AoxI | GGCC | 4 cut(s) | 246, 2024, 2580, 2886 |
| ApeKI | GCWGC | 4 cut(s) | 938, 1187, 2031, 2568 |
| ApoI | RAATTY | 4 cut(s) | 261, 816, 1952, 2488 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 314, 346, 1163, 1195 |
| AseI | ATTAAT | 2 cut(s) | 801, 1242 |
| AspLEI | GCGC | 5 cut(s) | 139, 208, 417, 419, 2183 |
| AspS9I | GGNCC | 4 cut(s) | 1973, 2024, 2691, 2814 |
| AsuHPI | GGTGA | 6 cut(s) | 42, 896, 1004, 1720, 2474, 2938 |
| AsuNHI | GCTAGC | 1 cut(s) | 493 |
| AvaI | CYCGRG | 1 cut(s) | 821 |
| AvaII | GGWCC | 3 cut(s) | 1973, 2691, 2814 |
| BaeGI | GKGCMC | 2 cut(s) | 544, 2789 |
| BalI | TGGCCA | 1 cut(s) | 2582 |
| BamHI | GGATCC | 1 cut(s) | 1730 |
| BanI | GGYRCC | 2 cut(s) | 541, 2370 |
| BanII | GRGCYC | 1 cut(s) | 146 |
| BbrPI | CACGTG | 1 cut(s) | 1104 |
| BbsI | GAAGAC | 2 cut(s) | 565, 2630 |
| Bbv12I | GWGCWC | 2 cut(s) | 146, 3265 |
| BbvI | GCAGC | 4 cut(s) | 925, 1199, 2018, 2555 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 182, 216 |
| BciT130I | CCWGG | 8 cut(s) | 869, 877, 1163, 1304, 1979, 2028, 2885, 3014 |
| BciVI | GTATCC | 3 cut(s) | 1389, 2756, 3317 |
| BclI | TGATCA | 4 cut(s) | 1032, 1155, 2794, 2911 |
| BcoDI | GTCTC | 8 cut(s) | 534, 576, 777, 1448, 1991, 2853, 3022, 3250 |
| BcuI | ACTAGT | 3 cut(s) | 2552, 2789, 3160 |
| BfaI | CTAG | 9 cut(s) | 494, 767, 1227, 2351, 2388, 2553, 2652, 2790, 3161 |
| BfmI | CTRYAG | 2 cut(s) | 1438, 1928 |
| BfrI | CTTAAG | 2 cut(s) | 1510, 1615 |
| BfuAI | ACCTGC | 2 cut(s) | 1785, 2649 |
| BfuI | GTATCC | 3 cut(s) | 1389, 2756, 3317 |
| BglII | AGATCT | 1 cut(s) | 646 |
| BisI | GCNGC | 5 cut(s) | 204, 939, 1188, 2032, 2569 |
| BlpI | GCTNAGC | 3 cut(s) | 140, 566, 2253 |
| BlsI | GCNGC | 5 cut(s) | 205, 940, 1189, 2033, 2570 |
| Bme1390I | CCNGG | 8 cut(s) | 869, 877, 1163, 1304, 1979, 2028, 2885, 3014 |
| Bme18I | GGWCC | 3 cut(s) | 1973, 2691, 2814 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2197 |
| BmeT110I | CYCGRG | 1 cut(s) | 821 |
| BmgT120I | GGNCC | 4 cut(s) | 1973, 2024, 2691, 2814 |
| BmiI | GGNNCC | 7 cut(s) | 393, 543, 1491, 1732, 1975, 2372, 2693 |
| BmrFI | CCNGG | 8 cut(s) | 869, 877, 1163, 1304, 1979, 2028, 2885, 3014 |
| BmsI | GCATC | 9 cut(s) | 106, 687, 883, 1062, 1492, 1678, 2455, 2901, 3250 |
| BmtI | GCTAGC | 1 cut(s) | 497 |
| BpiI | GAAGAC | 2 cut(s) | 565, 2630 |
| BpmI | CTGGAG | 2 cut(s) | 2867, 3046 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 140, 566, 2253 |
| BpuEI | CTTGAG | 3 cut(s) | 1266, 2771, 2918 |
| Bsa29I | ATCGAT | 1 cut(s) | 1569 |
| BsaAI | YACGTR | 2 cut(s) | 1104, 1298 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1052, 2436, 2442, 3079 |
| BsaI | GGTCTC | 1 cut(s) | 777 |
| BsaJI | CCNNGG | 5 cut(s) | 654, 867, 876, 1397, 1977 |
| BsaWI | WCCGGW | 1 cut(s) | 3372 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1049, 1796, 3013 |
| Bse1I | ACTGG | 2 cut(s) | 1012, 2493 |
| Bse3DI | GCAATG | 2 cut(s) | 2211, 2530 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1052, 2436, 2442, 3079 |
| BseAI | TCCGGA | 1 cut(s) | 3372 |
| BseBI | CCWGG | 8 cut(s) | 869, 877, 1163, 1304, 1979, 2028, 2885, 3014 |
| BseCI | ATCGAT | 1 cut(s) | 1569 |
| BseDI | CCNNGG | 5 cut(s) | 654, 867, 876, 1397, 1977 |
| BseJI | GATNNNNATC | 4 cut(s) | 1052, 2436, 2442, 3079 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1049, 1796, 3013 |
| BseMI | GCAATG | 2 cut(s) | 2211, 2530 |
| BseMII | CTCAG | 9 cut(s) | 27, 131, 365, 2109, 2235, 2244, 2334, 3008, 3228 |
| BseNI | ACTGG | 2 cut(s) | 1012, 2493 |
| BsePI | GCGCGC | 1 cut(s) | 415 |
| BseSI | GKGCMC | 2 cut(s) | 544, 2789 |
| BseXI | GCAGC | 4 cut(s) | 925, 1199, 2018, 2555 |
| BseYI | CCCAGC | 1 cut(s) | 2758 |
| Bsh1236I | CGCG | 3 cut(s) | 137, 417, 419 |
| BshFI | GGCC | 4 cut(s) | 248, 2026, 2582, 2888 |
| BshNI | GGYRCC | 2 cut(s) | 541, 2370 |
| BshVI | ATCGAT | 1 cut(s) | 1569 |
| BsiHKAI | GWGCWC | 2 cut(s) | 146, 3265 |
| BsiHKCI | CYCGRG | 1 cut(s) | 821 |
| BsiSI | CCGG | 2 cut(s) | 245, 3373 |
| BslFI | GGGAC | 4 cut(s) | 1959, 2202, 2269, 2677 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1049, 1796, 3013 |
| BsmAI | GTCTC | 8 cut(s) | 534, 576, 777, 1448, 1991, 2853, 3022, 3250 |
| BsmBI | CGTCTC | 1 cut(s) | 3250 |
| BsmFI | GGGAC | 4 cut(s) | 1959, 2202, 2269, 2677 |
| BsmI | GAATGC | 5 cut(s) | 1345, 1603, 1941, 2254, 3389 |
| BsnI | GGCC | 4 cut(s) | 248, 2026, 2582, 2888 |
| Bso31I | GGTCTC | 1 cut(s) | 777 |
| BsoBI | CYCGRG | 1 cut(s) | 821 |
| Bsp1286I | GDGCHC | 4 cut(s) | 146, 544, 2789, 3265 |
| Bsp13I | TCCGGA | 1 cut(s) | 3372 |
| Bsp1407I | TGTACA | 1 cut(s) | 2010 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 140, 566, 2253 |
| Bsp19I | CCATGG | 1 cut(s) | 1397 |
| BspACI | CCGC | 3 cut(s) | 203, 419, 760 |
| BspANI | GGCC | 4 cut(s) | 248, 2026, 2582, 2888 |
| BspCNI | CTCAG | 9 cut(s) | 26, 132, 366, 2110, 2234, 2245, 2335, 3007, 3229 |
| BspDI | ATCGAT | 1 cut(s) | 1569 |
| BspEI | TCCGGA | 1 cut(s) | 3372 |
| BspFNI | CGCG | 3 cut(s) | 137, 417, 419 |
| BspHI | TCATGA | 1 cut(s) | 1035 |
| BspLI | GGNNCC | 7 cut(s) | 393, 543, 1491, 1732, 1975, 2372, 2693 |
| BspMAI | CTGCAG | 1 cut(s) | 1932 |
| BspMI | ACCTGC | 2 cut(s) | 1785, 2649 |
| BspOI | GCTAGC | 1 cut(s) | 497 |
| BspPI | GGATC | 8 cut(s) | 173, 615, 1018, 1196, 1239, 1725, 1738, 2445 |
| BspQI | GCTCTTC | 1 cut(s) | 1626 |
| BspT107I | GGYRCC | 2 cut(s) | 541, 2370 |
| BspTI | CTTAAG | 2 cut(s) | 1510, 1615 |
| BspTNI | GGTCTC | 1 cut(s) | 777 |
| BsrDI | GCAATG | 2 cut(s) | 2211, 2530 |
| BsrGI | TGTACA | 1 cut(s) | 2010 |
| BsrI | ACTGG | 2 cut(s) | 1012, 2493 |
| BssECI | CCNNGG | 5 cut(s) | 654, 867, 876, 1397, 1977 |
| BssHII | GCGCGC | 1 cut(s) | 415 |
| BssNAI | GTATAC | 1 cut(s) | 2385 |
| BssT1I | CCWWGG | 2 cut(s) | 654, 1397 |
| Bst1107I | GTATAC | 1 cut(s) | 2385 |
| Bst2UI | CCWGG | 8 cut(s) | 869, 877, 1163, 1304, 1979, 2028, 2885, 3014 |
| Bst6I | CTCTTC | 4 cut(s) | 1626, 2687, 3072, 3215 |
| BstAFI | CTTAAG | 2 cut(s) | 1510, 1615 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 706, 935, 1936 |
| BstAUI | TGTACA | 1 cut(s) | 2010 |
| BstBAI | YACGTR | 2 cut(s) | 1104, 1298 |
| BstC8I | GCNNGC | 9 cut(s) | 146, 210, 417, 495, 1093, 1313, 1667, 2393, 2890 |
| BstDSI | CCRYGG | 1 cut(s) | 1397 |
| BstFNI | CGCG | 3 cut(s) | 137, 417, 419 |
| BstHHI | GCGC | 5 cut(s) | 139, 208, 417, 419, 2183 |
| BstMAI | GTCTC | 8 cut(s) | 534, 576, 777, 1448, 1991, 2853, 3022, 3250 |
| BstNI | CCWGG | 8 cut(s) | 869, 877, 1163, 1304, 1979, 2028, 2885, 3014 |
| BstNSI | RCATGY | 2 cut(s) | 2395, 2403 |
| BstSCI | CCNGG | 8 cut(s) | 867, 875, 1161, 1302, 1977, 2026, 2883, 3012 |
| BstSFI | CTRYAG | 2 cut(s) | 1438, 1928 |
| BstSLI | GKGCMC | 2 cut(s) | 544, 2789 |
| BstUI | CGCG | 3 cut(s) | 137, 417, 419 |
| BstV1I | GCAGC | 4 cut(s) | 925, 1199, 2018, 2555 |
| BstV2I | GAAGAC | 2 cut(s) | 565, 2630 |
| BstX2I | RGATCY | 6 cut(s) | 620, 646, 1010, 1231, 1730, 2437 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1007 |
| BstYI | RGATCY | 6 cut(s) | 620, 646, 1010, 1231, 1730, 2437 |
| BstZ17I | GTATAC | 1 cut(s) | 2385 |
| Bsu15I | ATCGAT | 1 cut(s) | 1569 |
| BsuI | GTATCC | 3 cut(s) | 1389, 2756, 3317 |
| BsuRI | GGCC | 4 cut(s) | 248, 2026, 2582, 2888 |
| BsuTUI | ATCGAT | 1 cut(s) | 1569 |
| BtgI | CCRYGG | 1 cut(s) | 1397 |
| BtsI | GCAGTG | 3 cut(s) | 2162, 2744, 3099 |
| BveI | ACCTGC | 2 cut(s) | 1785, 2649 |
| Cac8I | GCNNGC | 9 cut(s) | 146, 210, 417, 495, 1093, 1313, 1667, 2393, 2890 |
| CciI | TCATGA | 1 cut(s) | 1035 |
| CfoI | GCGC | 5 cut(s) | 139, 208, 417, 419, 2183 |
| Cfr13I | GGNCC | 4 cut(s) | 1973, 2024, 2691, 2814 |
| ClaI | ATCGAT | 1 cut(s) | 1569 |
| CseI | GACGC | 1 cut(s) | 2633 |
| CsiI | ACCWGGT | 2 cut(s) | 1161, 1302 |
| Csp6I | GTAC | 6 cut(s) | 659, 957, 1868, 1905, 2011, 2304 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1073, 1108 |
| CviQI | GTAC | 6 cut(s) | 659, 957, 1868, 1905, 2011, 2304 |
| DraI | TTTAAA | 2 cut(s) | 675, 1951 |
| DraIII | CACNNNGTG | 1 cut(s) | 1107 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2197 |
| EaeI | YGGCCR | 2 cut(s) | 246, 2580 |
| Eam1104I | CTCTTC | 4 cut(s) | 1626, 2687, 3072, 3215 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2197 |
| EarI | CTCTTC | 4 cut(s) | 1626, 2687, 3072, 3215 |
| Ecl136II | GAGCTC | 1 cut(s) | 144 |
| Eco130I | CCWWGG | 2 cut(s) | 654, 1397 |
| Eco147I | AGGCCT | 1 cut(s) | 2888 |
| Eco24I | GRGCYC | 1 cut(s) | 146 |
| Eco31I | GGTCTC | 1 cut(s) | 777 |
| Eco32I | GATATC | 2 cut(s) | 2736, 3370 |
| Eco47I | GGWCC | 3 cut(s) | 1973, 2691, 2814 |
| Eco53kI | GAGCTC | 1 cut(s) | 144 |
| Eco57I | CTGAAG | 2 cut(s) | 1667, 2484 |
| Eco72I | CACGTG | 1 cut(s) | 1104 |
| Eco88I | CYCGRG | 1 cut(s) | 821 |
| EcoICRI | GAGCTC | 1 cut(s) | 144 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2691 |
| EcoRII | CCWGG | 8 cut(s) | 867, 875, 1161, 1302, 1977, 2026, 2883, 3012 |
| EcoRV | GATATC | 2 cut(s) | 2736, 3370 |
| EcoT14I | CCWWGG | 2 cut(s) | 654, 1397 |
| EcoT22I | ATGCAT | 1 cut(s) | 3389 |
| EcoT38I | GRGCYC | 1 cut(s) | 146 |
| ErhI | CCWWGG | 2 cut(s) | 654, 1397 |
| Esp3I | CGTCTC | 1 cut(s) | 3250 |
| FaqI | GGGAC | 4 cut(s) | 1959, 2202, 2269, 2677 |
| FbaI | TGATCA | 4 cut(s) | 1032, 1155, 2794, 2911 |
| FblI | GTMKAC | 2 cut(s) | 1170, 2384 |
| Fnu4HI | GCNGC | 5 cut(s) | 204, 939, 1188, 2032, 2569 |
| FriOI | GRGCYC | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 5 cut(s) | 204, 939, 1188, 2032, 2569 |
| FspBI | CTAG | 9 cut(s) | 494, 767, 1227, 2351, 2388, 2553, 2652, 2790, 3161 |
| GlaI | GCGC | 5 cut(s) | 138, 207, 416, 418, 2182 |
| GluI | GCNGC | 5 cut(s) | 204, 939, 1188, 2032, 2569 |
| GsaI | CCCAGC | 1 cut(s) | 2762 |
| GsuI | CTGGAG | 2 cut(s) | 2867, 3046 |
| HaeIII | GGCC | 4 cut(s) | 248, 2026, 2582, 2888 |
| HapII | CCGG | 2 cut(s) | 245, 3373 |
| HgaI | GACGC | 1 cut(s) | 2633 |
| HhaI | GCGC | 5 cut(s) | 139, 208, 417, 419, 2183 |
| Hin6I | GCGC | 5 cut(s) | 137, 206, 415, 417, 2181 |
| HinP1I | GCGC | 5 cut(s) | 137, 206, 415, 417, 2181 |
| HincII | GTYRAC | 3 cut(s) | 459, 1454, 1896 |
| HindII | GTYRAC | 3 cut(s) | 459, 1454, 1896 |
| HpaII | CCGG | 2 cut(s) | 245, 3373 |
| HphI | GGTGA | 6 cut(s) | 42, 896, 1004, 1720, 2474, 2938 |
| Hpy166II | GTNNAC | 9 cut(s) | 380, 459, 1084, 1171, 1454, 1896, 2385, 2744, 3293 |
| Hpy8I | GTNNAC | 9 cut(s) | 380, 459, 1084, 1171, 1454, 1896, 2385, 2744, 3293 |
| Hpy99I | CGWCG | 5 cut(s) | 165, 173, 188, 191, 194 |
| HpyCH4IV | ACGT | 4 cut(s) | 1103, 1297, 1794, 1907 |
| HpySE526I | ACGT | 4 cut(s) | 1103, 1297, 1794, 1907 |
| HspAI | GCGC | 5 cut(s) | 137, 206, 415, 417, 2181 |
| Kpn2I | TCCGGA | 1 cut(s) | 3372 |
| Ksp22I | TGATCA | 4 cut(s) | 1032, 1155, 2794, 2911 |
| LguI | GCTCTTC | 1 cut(s) | 1626 |
| LmnI | GCTCC | 6 cut(s) | 397, 1348, 1510, 2180, 3009, 3109 |
| Lsp1109I | GCAGC | 4 cut(s) | 925, 1199, 2018, 2555 |
| LweI | GCATC | 9 cut(s) | 106, 687, 883, 1062, 1492, 1678, 2455, 2901, 3250 |
| MabI | ACCWGGT | 2 cut(s) | 1161, 1302 |
| MaeI | CTAG | 9 cut(s) | 494, 767, 1227, 2351, 2388, 2553, 2652, 2790, 3161 |
| MaeII | ACGT | 4 cut(s) | 1103, 1297, 1794, 1907 |
| MaeIII | GTNAC | 5 cut(s) | 69, 992, 1064, 1298, 1652 |
| MfeI | CAATTG | 1 cut(s) | 2631 |
| MflI | RGATCY | 6 cut(s) | 620, 646, 1010, 1231, 1730, 2437 |
| MhlI | GDGCHC | 4 cut(s) | 146, 544, 2789, 3265 |
| MlsI | TGGCCA | 1 cut(s) | 2582 |
| MluNI | TGGCCA | 1 cut(s) | 2582 |
| MlyI | GAGTC | 4 cut(s) | 79, 839, 1714, 2108 |
| MmeI | TCCRAC | 5 cut(s) | 124, 143, 1395, 1777, 3207 |
| Mox20I | TGGCCA | 1 cut(s) | 2582 |
| Mph1103I | ATGCAT | 1 cut(s) | 3389 |
| MroI | TCCGGA | 1 cut(s) | 3372 |
| MscI | TGGCCA | 1 cut(s) | 2582 |
| MslI | CAYNNNNRTG | 6 cut(s) | 217, 695, 748, 1883, 2535, 2771 |
| Msp20I | TGGCCA | 1 cut(s) | 2582 |
| MspA1I | CMGCKG | 2 cut(s) | 373, 1496 |
| MspCI | CTTAAG | 2 cut(s) | 1510, 1615 |
| MspI | CCGG | 2 cut(s) | 245, 3373 |
| MspR9I | CCNGG | 8 cut(s) | 869, 877, 1163, 1304, 1979, 2028, 2885, 3014 |
| MunI | CAATTG | 1 cut(s) | 2631 |
| Mva1269I | GAATGC | 5 cut(s) | 1345, 1603, 1941, 2254, 3389 |
| MvaI | CCWGG | 8 cut(s) | 869, 877, 1163, 1304, 1979, 2028, 2885, 3014 |
| MvnI | CGCG | 3 cut(s) | 137, 417, 419 |
| NcoI | CCATGG | 1 cut(s) | 1397 |
| NheI | GCTAGC | 1 cut(s) | 493 |
| NlaIV | GGNNCC | 7 cut(s) | 393, 543, 1491, 1732, 1975, 2372, 2693 |
| NmuCI | GTSAC | 3 cut(s) | 69, 992, 1652 |
| NsiI | ATGCAT | 1 cut(s) | 3389 |
| NspI | RCATGY | 2 cut(s) | 2395, 2403 |
| OliI | CACNNNNGTG | 1 cut(s) | 1883 |
| PacI | TTAATTAA | 1 cut(s) | 801 |
| PaeI | GCATGC | 1 cut(s) | 2395 |
| PagI | TCATGA | 1 cut(s) | 1035 |
| PauI | GCGCGC | 1 cut(s) | 415 |
| PceI | AGGCCT | 1 cut(s) | 2888 |
| PciI | ACATGT | 1 cut(s) | 2399 |
| PciSI | GCTCTTC | 1 cut(s) | 1626 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 189, 3265 |
| PctI | GAATGC | 5 cut(s) | 1345, 1603, 1941, 2254, 3389 |
| PflFI | GACNNNGTC | 1 cut(s) | 2841 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3013 |
| PfoI | TCCNGGA | 1 cut(s) | 3012 |
| PkrI | GCNGC | 5 cut(s) | 205, 940, 1189, 2033, 2570 |
| PleI | GAGTC | 4 cut(s) | 79, 839, 1714, 2108 |
| PmaCI | CACGTG | 1 cut(s) | 1104 |
| PmlI | CACGTG | 1 cut(s) | 1104 |
| PpsI | GAGTC | 4 cut(s) | 79, 839, 1714, 2108 |
| Ppu21I | YACGTR | 2 cut(s) | 1104, 1298 |
| PpuMI | RGGWCCY | 1 cut(s) | 2691 |
| PscI | ACATGT | 1 cut(s) | 2399 |
| PshBI | ATTAAT | 2 cut(s) | 801, 1242 |
| Psp124BI | GAGCTC | 1 cut(s) | 146 |
| Psp5II | RGGWCCY | 1 cut(s) | 2691 |
| Psp6I | CCWGG | 8 cut(s) | 867, 875, 1161, 1302, 1977, 2026, 2883, 3012 |
| PspCI | CACGTG | 1 cut(s) | 1104 |
| PspFI | CCCAGC | 1 cut(s) | 2758 |
| PspGI | CCWGG | 8 cut(s) | 867, 875, 1161, 1302, 1977, 2026, 2883, 3012 |
| PspN4I | GGNNCC | 7 cut(s) | 393, 543, 1491, 1732, 1975, 2372, 2693 |
| PspPI | GGNCC | 4 cut(s) | 1973, 2024, 2691, 2814 |
| PspPPI | RGGWCCY | 1 cut(s) | 2691 |
| PstI | CTGCAG | 1 cut(s) | 1932 |
| PsuI | RGATCY | 6 cut(s) | 620, 646, 1010, 1231, 1730, 2437 |
| PsyI | GACNNNGTC | 1 cut(s) | 2841 |
| PteI | GCGCGC | 1 cut(s) | 415 |
| PvuII | CAGCTG | 2 cut(s) | 373, 1496 |
| RsaI | GTAC | 6 cut(s) | 660, 958, 1869, 1906, 2012, 2305 |
| RsaNI | GTAC | 6 cut(s) | 659, 957, 1868, 1905, 2011, 2304 |
| RseI | CAYNNNNRTG | 6 cut(s) | 217, 695, 748, 1883, 2535, 2771 |
| SacI | GAGCTC | 1 cut(s) | 146 |
| SapI | GCTCTTC | 1 cut(s) | 1626 |
| SatI | GCNGC | 5 cut(s) | 204, 939, 1188, 2032, 2569 |
| Sau96I | GGNCC | 4 cut(s) | 1973, 2024, 2691, 2814 |
| SchI | GAGTC | 4 cut(s) | 79, 839, 1714, 2108 |
| ScrFI | CCNGG | 8 cut(s) | 869, 877, 1163, 1304, 1979, 2028, 2885, 3014 |
| SduI | GDGCHC | 4 cut(s) | 146, 544, 2789, 3265 |
| SexAI | ACCWGGT | 2 cut(s) | 1161, 1302 |
| SfaNI | GCATC | 9 cut(s) | 106, 687, 883, 1062, 1492, 1678, 2455, 2901, 3250 |
| SfcI | CTRYAG | 2 cut(s) | 1438, 1928 |
| SinI | GGWCC | 3 cut(s) | 1973, 2691, 2814 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 217, 695, 748, 1883, 2535, 2771 |
| SmlI | CTYRAG | 5 cut(s) | 1281, 1510, 1615, 2750, 2897 |
| SmoI | CTYRAG | 5 cut(s) | 1281, 1510, 1615, 2750, 2897 |
| SpeI | ACTAGT | 3 cut(s) | 2552, 2789, 3160 |
| SphI | GCATGC | 1 cut(s) | 2395 |
| SseBI | AGGCCT | 1 cut(s) | 2888 |
| SsiI | CCGC | 3 cut(s) | 203, 419, 760 |
| SspI | AATATT | 1 cut(s) | 1946 |
| SspMI | CTAG | 9 cut(s) | 494, 767, 1227, 2351, 2388, 2553, 2652, 2790, 3161 |
| SstI | GAGCTC | 1 cut(s) | 146 |
| StuI | AGGCCT | 1 cut(s) | 2888 |
| StyD4I | CCNGG | 8 cut(s) | 867, 875, 1161, 1302, 1977, 2026, 2883, 3012 |
| StyI | CCWWGG | 2 cut(s) | 654, 1397 |
| TaiI | ACGT | 4 cut(s) | 1106, 1300, 1797, 1910 |
| TaqI | TCGA | 6 cut(s) | 5, 24, 83, 1569, 3206, 3327 |
| TaqII | GACCGA | 2 cut(s) | 1881, 2831 |
| TatI | WGTACW | 1 cut(s) | 2010 |
| TauI | GCSGC | 1 cut(s) | 206 |
| TseFI | GTSAC | 3 cut(s) | 69, 992, 1652 |
| TseI | GCWGC | 4 cut(s) | 938, 1187, 2031, 2568 |
| Tsp45I | GTSAC | 3 cut(s) | 69, 992, 1652 |
| TspGWI | ACGGA | 2 cut(s) | 149, 1439 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2841 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3013 |
| Vha464I | CTTAAG | 2 cut(s) | 1510, 1615 |
| VpaK11BI | GGWCC | 3 cut(s) | 1973, 2691, 2814 |
| VspI | ATTAAT | 2 cut(s) | 801, 1242 |
| XapI | RAATTY | 4 cut(s) | 261, 816, 1952, 2488 |
| XceI | RCATGY | 2 cut(s) | 2395, 2403 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2751 |
| XmiI | GTMKAC | 2 cut(s) | 1170, 2384 |
| XspI | CTAG | 9 cut(s) | 494, 767, 1227, 2351, 2388, 2553, 2652, 2790, 3161 |
| Zsp2I | ATGCAT | 1 cut(s) | 3389 |