Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000762

Physical Location & Seq

Genomic Coordinates Reverse (-)

44920605 .. 44933103

Gene Structure 12499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG340800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTGGCGGATATTGGGTGGGACCTGGAGGTGTGGGAAGAGCCTATGAAGTTTAAGCCGGAGAGGTTTTTGAGTAAGGAGGGAGGAGATCAGGGGTTTGATATAATGGGGAGCAGAGAGATTAAGATGATGCCGTTTGGGGTTGAGAGGAAGATTTGCCCTGGACTTGATAGAGAGAGATCGGAGGCAAGAAGATTAGGACATCGCGACAAAGAAGTCAGGAGCAATCAACGAAACGCCAGTAGCAGCGCAAACCAAGATTTCATTGAAAATCAAGATTTGTTTGCTGCTATGGGGATTCAACTTCTTTTGGACAGGCGCTGTATCAAAAAAGTAAAGAAGGGAGGATACAGAGGGTTTTATGCCAAAATTACAATTCCCTTAACACCAAAGATTGTGAATGACATTCATAAACCTGGTGGCACCAACCTTGGGACAGCACGAGGTAGCCATAATAACTCAAAAATTGCGGACAACATTCAAGACATAGGATTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

166

Amino Acids

18.78

Weight (kDa)

9.3

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	6 - 55	6.3e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26270 AT4G29220 AT4G32840 AT5G56630
fragaria_vesca	FvH4_1g06570 FvH4_2g35190 FvH4_6g32610 FvH4_6g32610 FvH4_6g32610
malus_domestica	MD02G1068900.v1.1 MD08G1109700.v1.1 MD09G1200000.v1.1 MD15G1089400.v1.1 MD17G1180600.v1.1 MD17G1180700.v1.1 MD17G1180800.v1.1
prunus_persica	Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.7G216700_v2.0.a1
pyrus_communis	pycom02g05460 pycom07g22220 pycom09g11720 pycom15g08380 pycom17g19000 pycom17g19010 pycom17g19050
rosa_chinensis	RchiOBHm_Chr2g0092311 RchiOBHm_Chr2g0141061 RchiOBHm_Chr6g0306751
rosa_laevigata	RLG00000010768 RLG00000016296 RLG00000019912
rosa_multiflora	Rmu_sc0003289.1_g000020 Rmu_sc0010596.1_g000001 Rmu_sc0025856.1_g000001 Rmu_sc0032226.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104240 Rroxscaffold_2G00149270 Rroxscaffold_4G00313720 Rroxscaffold_7G00161490
rosa_rugosa	Rorug02G0024700 Rorug02G0366600 Rorug02G0366800 Rorug04G0176400 Rorug06G0352400 Rorug06G0352500
rosa_samantha	Rh2AG417900 Rh2BG070100 Rh2BG427800 Rh2CG071300 Rh2CG404200 Rh2DG069100 Rh2DG437400 Rh2DG437800 Rh4CG359100 Rh6AG464500 Rh6BG436300 Rh6CG478800 Rh6DG019000 Rh6DG465900 Rh6DG478600 Rh7DG340800
rosa_wichuraiana	Rw2G006170 Rw2G034210 Rw2G034270 Rw6G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	422
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	8, 470
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgsI	TTSAA	3 cut(s)	269, 302, 482
AjnI	CCWGG	3 cut(s)	24, 160, 415
AlwNI	CAGNNNCTG	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	246, 287
AspLEI	GCGC	2 cut(s)	251, 321
AspS9I	GGNCC	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	422
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BauI	CACGAG	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	258, 274
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	3 cut(s)	26, 162, 417
BciVI	GTATCC	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	341
BisI	GCNGC	2 cut(s)	247, 288
BlsI	GCNGC	2 cut(s)	248, 289
Bme1390I	CCNGG	3 cut(s)	26, 162, 417
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	23, 424
BmrFI	CCNGG	3 cut(s)	26, 162, 417
BmsI	GCATC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	160, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	240
BseBI	CCWGG	3 cut(s)	26, 162, 417
BseDI	CCNNGG	2 cut(s)	160, 430
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	258, 274
Bsh1236I	CGCG	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	35, 448
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmFI	GGGAC	2 cut(s)	35, 448
Bsp143I	GATC	2 cut(s)	88, 179
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	2 cut(s)	8, 470
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	23, 424
BspQI	GCTCTTC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	160, 430
BssMI	GATC	2 cut(s)	88, 179
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	3 cut(s)	26, 162, 417
Bst6I	CTCTTC	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	2 cut(s)	251, 321
BstKTI	GATC	2 cut(s)	91, 182
BstMBI	GATC	2 cut(s)	88, 179
BstNI	CCWGG	3 cut(s)	26, 162, 417
BstSCI	CCNGG	3 cut(s)	24, 160, 415
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	258, 274
BsuI	GTATCC	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	188
BtuMI	TCGCGA	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	321
CfoI	GCGC	2 cut(s)	251, 321
Cfr13I	GGNCC	1 cut(s)	22
CsiI	ACCWGGT	1 cut(s)	415
CviJI	RGCY	3 cut(s)	43, 58, 450
CviKI_1	RGCY	3 cut(s)	43, 58, 450
DpnI	GATC	2 cut(s)	90, 181
DpnII	GATC	2 cut(s)	88, 179
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	3 cut(s)	24, 160, 415
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaiI	YATR	7 cut(s)	47, 104, 293, 363, 411, 453, 488
FaqI	GGGAC	2 cut(s)	35, 448
Fnu4HI	GCNGC	2 cut(s)	247, 288
Fsp4HI	GCNGC	2 cut(s)	247, 288
GlaI	GCGC	2 cut(s)	250, 320
GluI	GCNGC	2 cut(s)	247, 288
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	322
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	2 cut(s)	251, 321
Hin6I	GCGC	2 cut(s)	249, 319
HinP1I	GCGC	2 cut(s)	249, 319
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	4 cut(s)	206, 220, 275, 482
HpyAV	CCTTC	1 cut(s)	334
HspAI	GCGC	2 cut(s)	249, 319
Kzo9I	GATC	2 cut(s)	88, 179
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	111, 222
Lsp1109I	GCAGC	2 cut(s)	258, 274
LweI	GCATC	1 cut(s)	120
MabI	ACCWGGT	1 cut(s)	415
MalI	GATC	2 cut(s)	90, 181
MboI	GATC	2 cut(s)	88, 179
MboII	GAAGA	3 cut(s)	50, 163, 204
MluCI	AATT	4 cut(s)	369, 375, 465, 496
MnlI	CCTC	9 cut(s)	22, 57, 73, 77, 141, 178, 338, 347, 437
MseI	TTAA	4 cut(s)	54, 123, 383, 495
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	26, 162, 417
MvaI	CCWGG	3 cut(s)	26, 162, 417
MvnI	CGCG	1 cut(s)	207
NdeII	GATC	2 cut(s)	88, 179
NlaIV	GGNNCC	2 cut(s)	23, 424
NruI	TCGCGA	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	248, 289
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	3 cut(s)	24, 160, 415
PspGI	CCWGG	3 cut(s)	24, 160, 415
PspN4I	GGNNCC	2 cut(s)	23, 424
PspPI	GGNCC	1 cut(s)	22
PspPPI	RGGWCCY	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	321
RruI	TCGCGA	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	54, 123, 383, 495
SatI	GCNGC	2 cut(s)	247, 288
Sau3AI	GATC	2 cut(s)	88, 179
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	3 cut(s)	26, 162, 417
SetI	ASST	6 cut(s)	27, 33, 68, 418, 432, 448
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	22
Sse9I	AATT	4 cut(s)	369, 375, 465, 496
SsiI	CCGC	2 cut(s)	8, 470
StyD4I	CCNGG	3 cut(s)	24, 160, 415
StyI	CCWWGG	1 cut(s)	430
TasI	AATT	4 cut(s)	369, 375, 465, 496
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	4 cut(s)	54, 123, 383, 495
Tru9I	TTAA	4 cut(s)	54, 123, 383, 495
TseI	GCWGC	2 cut(s)	246, 287
TspDTI	ATGAA	3 cut(s)	62, 253, 398
VpaK11BI	GGWCC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.