Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025856.1

Orthogroup ID

OG0000762

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2897

Gene Structure 2897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025856.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

acatatcccaatccattacaggacaatccttcctattcagttgttaagcagtatttcgttaatgtcgatgatagtgttgcccagacgattgtagtccagaaagatagtccaagaggcatacattttcgacgtgctggaccgcgtcagaaggtctattttgaaccagatgatgttcgtgcatgtattgtgacatgtggtggtttatgtccaggcttaaatacagtaattagagaaatagtatgtgggttgtactacatgtatggtgtccaccgaattcttggaatagagggcggatacagagggttttatgccagaaatacaattcccttaacaccaaaggttgtgaatgacatccataaacgtggtggcaccatccttgggacatcacgaggtggccatgatacctcaaagattgtggacagcattcaggacagaggaattaatcaggaatgcaggaggcgtggcctcaatgttgcagtggcgggaattccaaaaaccattgataatgatattccggtacttatgagaccaggcttaattaatttgatatatttgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00052 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04152 ko05230 map00010 map00030 map00051 map00052 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04152 map05230

Pfam Domains

Protein Families

PFK

Protein Analysis

186

Amino Acids

20.64

Weight (kDa)

9.28

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26270 AT4G29220 AT4G32840 AT5G56630
fragaria_vesca	FvH4_1g06570 FvH4_2g35190 FvH4_6g32610 FvH4_6g32610 FvH4_6g32610
malus_domestica	MD02G1068900.v1.1 MD08G1109700.v1.1 MD09G1200000.v1.1 MD15G1089400.v1.1 MD17G1180600.v1.1 MD17G1180700.v1.1 MD17G1180800.v1.1
prunus_persica	Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.7G216700_v2.0.a1
pyrus_communis	pycom02g05460 pycom07g22220 pycom09g11720 pycom15g08380 pycom17g19000 pycom17g19010 pycom17g19050
rosa_chinensis	RchiOBHm_Chr2g0092311 RchiOBHm_Chr2g0141061 RchiOBHm_Chr6g0306751
rosa_laevigata	RLG00000010768 RLG00000016296 RLG00000019912
rosa_multiflora	Rmu_sc0003289.1_g000020 Rmu_sc0010596.1_g000001 Rmu_sc0025856.1_g000001 Rmu_sc0032226.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104240 Rroxscaffold_2G00149270 Rroxscaffold_4G00313720 Rroxscaffold_7G00161490
rosa_rugosa	Rorug02G0024700 Rorug02G0366600 Rorug02G0366800 Rorug04G0176400 Rorug06G0352400 Rorug06G0352500
rosa_samantha	Rh2AG417900 Rh2BG070100 Rh2BG427800 Rh2CG071300 Rh2CG404200 Rh2DG069100 Rh2DG437400 Rh2DG437800 Rh4CG359100 Rh6AG464500 Rh6BG436300 Rh6CG478800 Rh6DG019000 Rh6DG465900 Rh6DG478600 Rh7DG340800
rosa_wichuraiana	Rw2G006170 Rw2G034210 Rw2G034270 Rw6G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AccII	CGCG	1 cut(s)	142
AciI	CCGC	3 cut(s)	140, 291, 482
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	2 cut(s)	273, 486
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	251, 519
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflIII	ACRYGT	2 cut(s)	191, 255
AgsI	TTSAA	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	208, 529
Alw26I	GTCTC	1 cut(s)	520
AoxI	GGCC	2 cut(s)	394, 463
ApoI	RAATTY	2 cut(s)	273, 486
AseI	ATTAAT	2 cut(s)	441, 540
AspS9I	GGNCC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	368
BauI	CACGAG	1 cut(s)	387
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	2 cut(s)	210, 531
BciVI	GTATCC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	210, 531
Bme18I	GGWCC	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	2 cut(s)	210, 531
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	210, 531
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	2 cut(s)	351, 372
BseLI	CCNNNNNNNGG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	396, 465
BshNI	GGYRCC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	394
BsmI	GAATGC	2 cut(s)	423, 455
BsnI	GGCC	2 cut(s)	396, 465
Bso31I	GGTCTC	1 cut(s)	520
BspACI	CCGC	3 cut(s)	140, 291, 482
BspANI	GGCC	2 cut(s)	396, 465
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	376
BssSI	CACGAG	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	376
Bst2BI	CACGAG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	210, 531
Bst4CI	ACNGT	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	351, 372
BstFNI	CGCG	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	520
BstNI	CCWGG	2 cut(s)	210, 531
BstNSI	RCATGY	3 cut(s)	183, 195, 259
BstSCI	CCNGG	2 cut(s)	208, 529
BstUI	CGCG	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	396, 465
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	351, 372
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	137
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	250, 518
CspCI	CAANNNNNGTGG	2 cut(s)	396, 431
CviAII	CATG	4 cut(s)	180, 192, 256, 398
CviJI	RGCY	4 cut(s)	213, 396, 465, 534
CviKI_1	RGCY	4 cut(s)	213, 396, 465, 534
CviQI	GTAC	2 cut(s)	250, 518
DraIII	CACNNNGTG	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	394
EciI	GGCGGA	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	137
EcoRI	GAATTC	2 cut(s)	273, 486
EcoRII	CCWGG	2 cut(s)	208, 529
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	4 cut(s)	183, 195, 259, 401
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	4 cut(s)	179, 191, 255, 397
FauI	CCCGC	1 cut(s)	475
FokI	GGATG	2 cut(s)	338, 359
HaeIII	GGCC	2 cut(s)	396, 465
HapII	CCGG	1 cut(s)	515
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	183, 195, 259, 401
HpaII	CCGG	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	268, 418
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	4 cut(s)	97, 387, 428, 446
Hpy8I	GTNNAC	2 cut(s)	268, 418
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	39, 142
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	2 cut(s)	130, 361
HpyCH4V	TGCA	3 cut(s)	179, 453, 476
HpySE526I	ACGT	2 cut(s)	130, 361
Hsp92II	CATG	4 cut(s)	183, 195, 259, 401
MaeII	ACGT	2 cut(s)	130, 361
MaeIII	GTNAC	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	7 cut(s)	225, 273, 321, 438, 486, 537, 541
MluNI	TGGCCA	1 cut(s)	396
MnlI	CCTC	8 cut(s)	107, 280, 293, 383, 415, 428, 450, 476
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	8 cut(s)	45, 60, 215, 329, 441, 536, 540, 559
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	396
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	2 cut(s)	210, 531
Mva1269I	GAATGC	2 cut(s)	423, 455
MvaI	CCWGG	2 cut(s)	210, 531
MvnI	CGCG	1 cut(s)	142
NlaIII	CATG	4 cut(s)	183, 195, 259, 401
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	3 cut(s)	183, 195, 259
PacI	TTAATTAA	1 cut(s)	540
PciI	ACATGT	2 cut(s)	191, 255
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	2 cut(s)	423, 455
PflFI	GACNNNGTC	1 cut(s)	141
PscI	ACATGT	2 cut(s)	191, 255
PshBI	ATTAAT	2 cut(s)	441, 540
Psp6I	CCWGG	2 cut(s)	208, 529
PspGI	CCWGG	2 cut(s)	208, 529
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	141
RsaI	GTAC	2 cut(s)	251, 519
RsaNI	GTAC	2 cut(s)	250, 518
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	8 cut(s)	45, 60, 215, 329, 441, 536, 540, 559
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	210, 531
SetI	ASST	6 cut(s)	133, 153, 342, 364, 394, 407
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	7 cut(s)	225, 273, 321, 438, 486, 537, 541
SsiI	CCGC	3 cut(s)	140, 291, 482
StyD4I	CCNGG	2 cut(s)	208, 529
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	2 cut(s)	133, 364
TaqI	TCGA	2 cut(s)	66, 127
TasI	AATT	7 cut(s)	225, 273, 321, 438, 486, 537, 541
TatI	WGTACW	1 cut(s)	249
Tru1I	TTAA	8 cut(s)	45, 60, 215, 329, 441, 536, 540, 559
Tru9I	TTAA	8 cut(s)	45, 60, 215, 329, 441, 536, 540, 559
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspRI	CASTG	1 cut(s)	483
Tth111I	GACNNNGTC	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	137
VspI	ATTAAT	2 cut(s)	441, 540
XapI	RAATTY	2 cut(s)	273, 486
XceI	RCATGY	3 cut(s)	183, 195, 259
XcmI	CCANNNNNNNNNTGG	2 cut(s)	275, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.