Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000762

Physical Location & Seq

Genomic Coordinates Reverse (-)

16604315 .. 16608099

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19050.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCAATTTCCGACAACTCCGAGCCCAAAACCGCCACCGGCCCCTCTGGCTACGTCCTCCAAGATGTTCCTCACTTAGTTGATTACATCCCCGATCTCCAAACGTATCCCAATCCATTACAAGACAATCCCTCCTATTCGGGTGTCAAGCAGTATTTCGTCAATGCGGATGTTACCGTAGCCCAAAAGATTGTTGTCCACAAGGATAGTCCAAGGGGGACGCACTTTCGACGCTCTGGACCACGTCAGAAGGTGTATTTTGAGTCAAGTGAAGTGCATGCGTGTGTCGTGACATGTGGTGGTCTATGTCCAGGACTGAATACAGCTATTAGAGAAATAGTATGCGGGCTGAACCACATGTATGGTGTCACAAGAATTCTCGGAATAGAGGGTGGATACAGGGGGTTTTATGCCAGAAATACAATCCCCTTAACGCCAGAGGTTGTGAATGACATCCATAAACGTGGTGGCACCATCCTTGGGACATCACGAGGCGGGCATGATACCTCAAAGATTGTGGACAGCATCCAGGACAGAGGAATTAATCAGGTTTATATACTTGGGGGAAACGGAACTCAGAGAGGAGCTTCGGTGATTTTTGAGGAAATCAGGAGGCGTGGCCTCAAAGTAGCGGTGGCAGGAATTCCAAAAACCATCGATAATGACATTCCGGTTATAGACAAATCTTTTGGTTTTGACACTGCTGTTGAGGAGGCTCAGGGAGCCATTAGTGCAGCCCATGTTGAAGCAGGAAGCATTGAGAATGGTATTGGAGTCGTCAAGTTAATGGGCCGCTTTAGTGGATTCATAGCAATGTATGCTACTCTTGCTAGCCGAGACGTAGACTGTTGTCTGATTCCAGAATCGCCTTTCTATCTGGAAGGACCAGGTGGACTATATGAATATATTGAAAGAAGACTGAAGGAGAATGGTCACATGGTTATAGTAATAGCCGAAGGTGCAGGACAAGAGCTTCTTCCTGAAAGCATGAACCAGCAGGATGCTTCTGGAAATAAGCTTCTGCAAGATGTTGGTCTGTGGTTATCGCAAAATATTAGGGATCACTTCTCGAAACAGGGAAAGATGACTATAAATCTCAAATATATAGATCCCACTTACATCGATCCGTGCAATTCCGGGCAATGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00052 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04152 ko05230 map00010 map00030 map00051 map00052 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04152 map05230

Pfam Domains

Protein Families

PFK

Protein Analysis

384

Amino Acids

41.68

Weight (kDa)

5.95

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26270 AT4G29220 AT4G32840 AT5G56630
fragaria_vesca	FvH4_1g06570 FvH4_2g35190 FvH4_6g32610 FvH4_6g32610 FvH4_6g32610
malus_domestica	MD02G1068900.v1.1 MD08G1109700.v1.1 MD09G1200000.v1.1 MD15G1089400.v1.1 MD17G1180600.v1.1 MD17G1180700.v1.1 MD17G1180800.v1.1
prunus_persica	Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.7G216700_v2.0.a1
pyrus_communis	pycom02g05460 pycom07g22220 pycom09g11720 pycom15g08380 pycom17g19000 pycom17g19010 pycom17g19050
rosa_chinensis	RchiOBHm_Chr2g0092311 RchiOBHm_Chr2g0141061 RchiOBHm_Chr6g0306751
rosa_laevigata	RLG00000010768 RLG00000016296 RLG00000019912
rosa_multiflora	Rmu_sc0003289.1_g000020 Rmu_sc0010596.1_g000001 Rmu_sc0025856.1_g000001 Rmu_sc0032226.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104240 Rroxscaffold_2G00149270 Rroxscaffold_4G00313720 Rroxscaffold_7G00161490
rosa_rugosa	Rorug02G0024700 Rorug02G0366600 Rorug02G0366800 Rorug04G0176400 Rorug06G0352400 Rorug06G0352500
rosa_samantha	Rh2AG417900 Rh2BG070100 Rh2BG427800 Rh2CG071300 Rh2CG404200 Rh2DG069100 Rh2DG437400 Rh2DG437800 Rh4CG359100 Rh6AG464500 Rh6BG436300 Rh6CG478800 Rh6DG019000 Rh6DG465900 Rh6DG478600 Rh7DG340800
rosa_wichuraiana	Rw2G006170 Rw2G034210 Rw2G034270 Rw6G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	843
AciI	CCGC	6 cut(s)	33, 167, 345, 495, 632, 793
AclWI	GGATC	3 cut(s)	1068, 1103, 1118
AcsI	RAATTY	2 cut(s)	375, 642
AcuI	CTGAAG	1 cut(s)	941
AfiI	CCNNNNNNNGG	1 cut(s)	480
AflIII	ACRYGT	2 cut(s)	293, 357
AgsI	TTSAA	2 cut(s)	746, 911
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	3 cut(s)	310, 528, 886
AluBI	AGCT	4 cut(s)	326, 587, 973, 1018
AluI	AGCT	4 cut(s)	326, 587, 973, 1018
Alw26I	GTCTC	1 cut(s)	831
AlwI	GGATC	3 cut(s)	1068, 1103, 1118
AoxI	GGCC	3 cut(s)	40, 619, 790
ApeKI	GCWGC	1 cut(s)	734
ApoI	RAATTY	2 cut(s)	375, 642
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
AseI	ATTAAT	1 cut(s)	543
AspS9I	GGNCC	4 cut(s)	41, 239, 790, 884
AsuC2I	CCSGG	1 cut(s)	1138
AsuHPI	GGTGA	1 cut(s)	604
AsuNHI	GCTAGC	1 cut(s)	830
AvaII	GGWCC	2 cut(s)	239, 884
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	922
BbvI	GCAGC	1 cut(s)	746
BccI	CCATC	2 cut(s)	482, 662
BciT130I	CCWGG	3 cut(s)	312, 530, 888
BciVI	GTATCC	2 cut(s)	117, 389
BcnI	CCSGG	1 cut(s)	1138
BcoDI	GTCTC	1 cut(s)	831
BfaI	CTAG	1 cut(s)	831
BfuI	GTATCC	2 cut(s)	117, 389
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	2 cut(s)	735, 793
BlsI	GCNGC	2 cut(s)	736, 794
Bme1390I	CCNGG	4 cut(s)	312, 530, 888, 1138
Bme18I	GGWCC	2 cut(s)	239, 884
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	4 cut(s)	41, 239, 790, 884
BmiI	GGNNCC	3 cut(s)	43, 472, 724
BmrFI	CCNGG	4 cut(s)	312, 530, 888, 1138
BmsI	GCATC	2 cut(s)	534, 991
BmtI	GCTAGC	1 cut(s)	834
BoxI	GACNNNNGTC	1 cut(s)	849
BpiI	GAAGAC	1 cut(s)	922
Bpu10I	CCTNAGC	1 cut(s)	717
BpuMI	CCSGG	1 cut(s)	1138
Bsa29I	ATCGAT	2 cut(s)	657, 1122
BsaJI	CCNNGG	2 cut(s)	212, 478
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 576, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse118I	RCCGGY	1 cut(s)	38
Bse3DI	GCAATG	2 cut(s)	819, 1148
BseBI	CCWGG	3 cut(s)	312, 530, 888
BseCI	ATCGAT	2 cut(s)	657, 1122
BseDI	CCNNGG	2 cut(s)	212, 478
BseGI	GGATG	6 cut(s)	87, 175, 453, 474, 525, 1006
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMI	GCAATG	2 cut(s)	819, 1148
BseMII	CTCAG	2 cut(s)	590, 731
BseRI	GAGGAG	2 cut(s)	597, 725
BseXI	GCAGC	1 cut(s)	746
BsgI	GTGCAG	2 cut(s)	753, 981
BshFI	GGCC	3 cut(s)	42, 621, 792
BshNI	GGYRCC	1 cut(s)	470
BshVI	ATCGAT	2 cut(s)	657, 1122
BsiSI	CCGG	3 cut(s)	39, 671, 1137
BslFI	GGGAC	2 cut(s)	232, 496
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	1 cut(s)	831
BsmBI	CGTCTC	1 cut(s)	831
BsmFI	GGGAC	2 cut(s)	232, 496
BsnI	GGCC	3 cut(s)	42, 621, 792
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	94, 1060, 1108, 1123
BspACI	CCGC	6 cut(s)	33, 167, 345, 495, 632, 793
BspANI	GGCC	3 cut(s)	42, 621, 792
BspCNI	CTCAG	2 cut(s)	589, 730
BspDI	ATCGAT	2 cut(s)	657, 1122
BspLI	GGNNCC	3 cut(s)	43, 472, 724
BspOI	GCTAGC	1 cut(s)	834
BspPI	GGATC	3 cut(s)	1068, 1103, 1118
BspT107I	GGYRCC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	819, 1148
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	212, 478
BssMI	GATC	4 cut(s)	94, 1060, 1108, 1123
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	212, 478
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	3 cut(s)	312, 530, 888
Bst4CI	ACNGT	2 cut(s)	178, 848
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstC8I	GCNNGC	4 cut(s)	279, 347, 497, 832
BstDEI	CTNAG	3 cut(s)	76, 576, 717
BstF5I	GGATG	6 cut(s)	87, 175, 453, 474, 525, 1006
BstKTI	GATC	4 cut(s)	97, 1063, 1111, 1126
BstMAI	GTCTC	1 cut(s)	831
BstMBI	GATC	4 cut(s)	94, 1060, 1108, 1123
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 722, 731, 818, 827, 959
BstNI	CCWGG	3 cut(s)	312, 530, 888
BstNSI	RCATGY	3 cut(s)	281, 297, 361
BstPAI	GACNNNNGTC	1 cut(s)	849
BstSCI	CCNGG	4 cut(s)	310, 528, 886, 1136
BstV1I	GCAGC	1 cut(s)	746
BstV2I	GAAGAC	1 cut(s)	922
BstX2I	RGATCY	1 cut(s)	1108
BstXI	CCANNNNNNTGG	2 cut(s)	362, 464
BstYI	RGATCY	1 cut(s)	1108
Bsu15I	ATCGAT	2 cut(s)	657, 1122
BsuI	GTATCC	2 cut(s)	117, 389
BsuRI	GGCC	3 cut(s)	42, 621, 792
BsuTUI	ATCGAT	2 cut(s)	657, 1122
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	6 cut(s)	87, 175, 453, 474, 525, 1006
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	4 cut(s)	279, 347, 497, 832
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	4 cut(s)	41, 239, 790, 884
ClaI	ATCGAT	2 cut(s)	657, 1122
CseI	GACGC	2 cut(s)	229, 240
CsiI	ACCWGGT	1 cut(s)	886
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	7 cut(s)	278, 294, 358, 500, 740, 937, 988
DdeI	CTNAG	3 cut(s)	76, 576, 717
DpnI	GATC	4 cut(s)	96, 1062, 1110, 1125
DpnII	GATC	4 cut(s)	94, 1060, 1108, 1123
Eco130I	CCWWGG	2 cut(s)	212, 478
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	239, 884
Eco57I	CTGAAG	1 cut(s)	941
EcoRI	GAATTC	2 cut(s)	375, 642
EcoRII	CCWGG	3 cut(s)	310, 528, 886
EcoT14I	CCWWGG	2 cut(s)	212, 478
EcoT22I	ATGCAT	1 cut(s)	1148
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	212, 478
Esp3I	CGTCTC	1 cut(s)	831
FaeI	CATG	7 cut(s)	281, 297, 361, 503, 743, 940, 991
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FaqI	GGGAC	2 cut(s)	232, 496
FatI	CATG	7 cut(s)	277, 293, 357, 499, 739, 936, 987
FauI	CCCGC	2 cut(s)	338, 488
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	2 cut(s)	735, 793
FokI	GGATG	6 cut(s)	74, 182, 440, 461, 512, 1013
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	735, 793
FspBI	CTAG	1 cut(s)	831
GluI	GCNGC	2 cut(s)	735, 793
HaeIII	GGCC	3 cut(s)	42, 621, 792
HapII	CCGG	3 cut(s)	39, 671, 1137
HgaI	GACGC	2 cut(s)	229, 240
Hin1II	CATG	7 cut(s)	281, 297, 361, 503, 743, 940, 991
HindIII	AAGCTT	1 cut(s)	1016
HinfI	GANTC	5 cut(s)	263, 774, 804, 856, 863
HpaII	CCGG	3 cut(s)	39, 671, 1137
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	4 cut(s)	199, 520, 844, 893
Hpy188I	TCNGA	7 cut(s)	13, 22, 249, 383, 579, 855, 1151
Hpy188III	TCNNGA	9 cut(s)	237, 289, 489, 610, 860, 878, 980, 1008, 1069
Hpy8I	GTNNAC	4 cut(s)	199, 520, 844, 893
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	4 cut(s)	244, 875, 916, 950
HpyCH4III	ACNGT	2 cut(s)	178, 848
HpyCH4IV	ACGT	5 cut(s)	54, 104, 244, 463, 840
HpyCH4V	TGCA	6 cut(s)	277, 734, 962, 1024, 1131, 1146
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 722, 731, 818, 827, 959
HpyF3I	CTNAG	3 cut(s)	76, 576, 717
HpySE526I	ACGT	5 cut(s)	54, 104, 244, 463, 840
Hsp92II	CATG	7 cut(s)	281, 297, 361, 503, 743, 940, 991
Kzo9I	GATC	4 cut(s)	94, 1060, 1108, 1123
LmnI	GCTCC	2 cut(s)	584, 722
Lsp1109I	GCAGC	1 cut(s)	746
LweI	GCATC	2 cut(s)	534, 991
MabI	ACCWGGT	1 cut(s)	886
MaeI	CTAG	1 cut(s)	831
MaeII	ACGT	5 cut(s)	54, 104, 244, 463, 840
MaeIII	GTNAC	4 cut(s)	172, 289, 367, 932
MalI	GATC	4 cut(s)	96, 1062, 1110, 1125
MboI	GATC	4 cut(s)	94, 1060, 1108, 1123
MboII	GAAGA	2 cut(s)	927, 968
MflI	RGATCY	1 cut(s)	1108
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	5 cut(s)	6, 375, 540, 642, 1132
MlyI	GAGTC	2 cut(s)	272, 783
MmeI	TCCRAC	1 cut(s)	36
Mph1103I	ATGCAT	1 cut(s)	1148
MseI	TTAA	3 cut(s)	431, 543, 785
MslI	CAYNNNNRTG	4 cut(s)	282, 360, 462, 812
MspI	CCGG	3 cut(s)	39, 671, 1137
MspR9I	CCNGG	4 cut(s)	312, 530, 888, 1138
MvaI	CCWGG	3 cut(s)	312, 530, 888
MwoI	GCNNNNNNNGC	6 cut(s)	48, 722, 731, 818, 827, 959
NciI	CCSGG	1 cut(s)	1138
NdeII	GATC	4 cut(s)	94, 1060, 1108, 1123
NheI	GCTAGC	1 cut(s)	830
NlaIII	CATG	7 cut(s)	281, 297, 361, 503, 743, 940, 991
NlaIV	GGNNCC	3 cut(s)	43, 472, 724
NmeAIII	GCCGAG	1 cut(s)	860
NmuCI	GTSAC	3 cut(s)	289, 367, 932
NsiI	ATGCAT	1 cut(s)	1148
NspI	RCATGY	3 cut(s)	281, 297, 361
PaeI	GCATGC	1 cut(s)	281
PciI	ACATGT	2 cut(s)	293, 357
PfeI	GAWTC	3 cut(s)	804, 856, 863
PflFI	GACNNNGTC	1 cut(s)	243
PfoI	TCCNGGA	2 cut(s)	310, 528
PkrI	GCNGC	2 cut(s)	736, 794
PleI	GAGTC	2 cut(s)	271, 782
PpsI	GAGTC	2 cut(s)	271, 782
PscI	ACATGT	2 cut(s)	293, 357
PshAI	GACNNNNGTC	1 cut(s)	849
PshBI	ATTAAT	1 cut(s)	543
Psp6I	CCWGG	3 cut(s)	310, 528, 886
PspGI	CCWGG	3 cut(s)	310, 528, 886
PspN4I	GGNNCC	3 cut(s)	43, 472, 724
PspPI	GGNCC	4 cut(s)	41, 239, 790, 884
PsuI	RGATCY	1 cut(s)	1108
PsyI	GACNNNGTC	1 cut(s)	243
RseI	CAYNNNNRTG	4 cut(s)	282, 360, 462, 812
SaqAI	TTAA	3 cut(s)	431, 543, 785
SatI	GCNGC	2 cut(s)	735, 793
Sau3AI	GATC	4 cut(s)	94, 1060, 1108, 1123
Sau96I	GGNCC	4 cut(s)	41, 239, 790, 884
SchI	GAGTC	2 cut(s)	272, 783
ScrFI	CCNGG	4 cut(s)	312, 530, 888, 1138
SduI	GDGCHC	1 cut(s)	27
SexAI	ACCWGGT	1 cut(s)	886
SfaNI	GCATC	2 cut(s)	534, 991
SinI	GGWCC	2 cut(s)	239, 884
SmiMI	CAYNNNNRTG	4 cut(s)	282, 360, 462, 812
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	5 cut(s)	6, 375, 540, 642, 1132
SsiI	CCGC	6 cut(s)	33, 167, 345, 495, 632, 793
SspI	AATATT	1 cut(s)	1054
SspMI	CTAG	1 cut(s)	831
StyD4I	CCNGG	4 cut(s)	310, 528, 886, 1136
StyI	CCWWGG	2 cut(s)	212, 478
TaaI	ACNGT	2 cut(s)	178, 848
TaiI	ACGT	5 cut(s)	57, 107, 247, 466, 843
TaqI	TCGA	4 cut(s)	229, 657, 1070, 1122
TasI	AATT	5 cut(s)	6, 375, 540, 642, 1132
TauI	GCSGC	1 cut(s)	795
TfiI	GAWTC	3 cut(s)	804, 856, 863
Tru1I	TTAA	3 cut(s)	431, 543, 785
Tru9I	TTAA	3 cut(s)	431, 543, 785
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	3 cut(s)	289, 367, 932
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	3 cut(s)	289, 367, 932
TspDTI	ATGAA	3 cut(s)	796, 915, 1004
TspGWI	ACGGA	2 cut(s)	585, 1116
TspRI	CASTG	1 cut(s)	706
Tth111I	GACNNNGTC	1 cut(s)	243
VpaK11BI	GGWCC	2 cut(s)	239, 884
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	2 cut(s)	375, 642
XceI	RCATGY	3 cut(s)	281, 297, 361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	843
XspI	CTAG	1 cut(s)	831
Zsp2I	ATGCAT	1 cut(s)	1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.