Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000762

Physical Location & Seq

Genomic Coordinates Forward (+)

60351606 .. 60354675

Gene Structure 3070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG427800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCACCACTCCACGGTTCCGCTGCTTCGACCCCACCAACTCTTACGCTGCGACGCCCGATCACCCCCGCCGCTTCAGCACCACCTCCAATTCAACTCCCAGGTACTACAACAACAACAACAACAACTCCAAGGGCACTATGGGAATTTCCGCCAACTCCGAGCCCAAGATCATCACCGGCGACGCTGGCTACGTTCTCGAAGACGTCCCTCACTTGTCCGATTACATCCCCGATCTCCCTACATATCCCAATCCATTACAGGACAATCCTTCCTATTCAGTTGTTAAGCAATATTTCGTTAATGTCGATGATAGTGTTGCCCAGACGATTGTAGTCCAGAAAGATAGTCCAAGAGGCATACATTTTCGACGTGCTGGACCGCGTCAGAAGGTCTATTTTGAACCAGATGATGTTCGTGCATGTATTGTGACATGTGGTGGTTTATGTCCAGGCTTAAATACAGTAATTAGAGAAATAGTGTGTGGGTTGTACTACATGTATGGTGTCCACCGAATTCTTGGAATAGAGGGCGGATACAGAGGGTTTTATGCCAGAAATACAATTCCCTTAACACCAAAGGTTGTGAATGACATCCATAAACGTGGTGGCACCATCCTTGGGACATCACGAGGTGGCCATGATACCTCAAAGATTGTGGACAGCATTCAGGACAGAGGAATTAATCAGGTTTACATACTTGGGGGAGACGGTACACAGAAAGGAGCTTCTGTAATATTTGAGGAATGCAGGAGGCGTGGCCTCAATGTTGCAGTGGCAGGAATTCCAAAAACCATTGATAATGATATTCCGGTTATAGACAAGTCCTTTGGTTTTGACACTGCTGTTGAGGAGGCTCAACGAGCCATTAATGCAGCTCATGTTGAAGCAGAAAGCATTGAGAATGGTATTGGCGTTGTCAAGTTAATGGGTCGCTACAGTGGTAAAATGTTATTTCTCTATAGAATCTTTCAAGTTATCCAATTTAAGAGTATTTTACAGAACATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00052 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04152 ko05230 map00010 map00030 map00051 map00052 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04152 map05230

Pfam Domains

Protein Families

PFK

Protein Analysis

337

Amino Acids

37.23

Weight (kDa)

8.62

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PFK	PF00365	141 - 316	5.2e-46	Phosphofructokinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26270 AT4G29220 AT4G32840 AT5G56630
fragaria_vesca	FvH4_1g06570 FvH4_2g35190 FvH4_6g32610 FvH4_6g32610 FvH4_6g32610
malus_domestica	MD02G1068900.v1.1 MD08G1109700.v1.1 MD09G1200000.v1.1 MD15G1089400.v1.1 MD17G1180600.v1.1 MD17G1180700.v1.1 MD17G1180800.v1.1
prunus_persica	Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.7G216700_v2.0.a1
pyrus_communis	pycom02g05460 pycom07g22220 pycom09g11720 pycom15g08380 pycom17g19000 pycom17g19010 pycom17g19050
rosa_chinensis	RchiOBHm_Chr2g0092311 RchiOBHm_Chr2g0141061 RchiOBHm_Chr6g0306751
rosa_laevigata	RLG00000010768 RLG00000016296 RLG00000019912
rosa_multiflora	Rmu_sc0003289.1_g000020 Rmu_sc0010596.1_g000001 Rmu_sc0025856.1_g000001 Rmu_sc0032226.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104240 Rroxscaffold_2G00149270 Rroxscaffold_4G00313720 Rroxscaffold_7G00161490
rosa_rugosa	Rorug02G0024700 Rorug02G0366600 Rorug02G0366800 Rorug04G0176400 Rorug06G0352400 Rorug06G0352500
rosa_samantha	Rh2AG417900 Rh2BG070100 Rh2BG427800 Rh2CG071300 Rh2CG404200 Rh2DG069100 Rh2DG437400 Rh2DG437800 Rh4CG359100 Rh6AG464500 Rh6BG436300 Rh6CG478800 Rh6DG019000 Rh6DG465900 Rh6DG478600 Rh7DG340800
rosa_wichuraiana	Rw2G006170 Rw2G034210 Rw2G034270 Rw6G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	611
AccII	CGCG	1 cut(s)	385
AciI	CCGC	6 cut(s)	22, 70, 73, 153, 383, 534
AcoI	YGGCCR	2 cut(s)	3, 637
AcsI	RAATTY	3 cut(s)	147, 516, 783
AcuI	CTGAAG	1 cut(s)	61
AcyI	GRCGYC	2 cut(s)	56, 207
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	3 cut(s)	107, 494, 715
AfiI	CCNNNNNNNGG	2 cut(s)	15, 621
AflIII	ACRYGT	2 cut(s)	434, 498
AgsI	TTSAA	4 cut(s)	96, 404, 887, 974
AjiI	CACGTC	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	101, 451
AluBI	AGCT	2 cut(s)	728, 878
AluI	AGCT	2 cut(s)	728, 878
Alw26I	GTCTC	1 cut(s)	702
AoxI	GGCC	3 cut(s)	3, 637, 760
ApeKI	GCWGC	3 cut(s)	24, 50, 875
ApoI	RAATTY	3 cut(s)	147, 516, 783
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AseI	ATTAAT	2 cut(s)	684, 870
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	56, 169
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	140
BalI	TGGCCA	2 cut(s)	5, 639
BanI	GGYRCC	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	11, 37, 887
BccI	CCATC	1 cut(s)	623
BciT130I	CCWGG	2 cut(s)	103, 453
BciVI	GTATCC	1 cut(s)	530
BcoDI	GTCTC	1 cut(s)	702
BfmI	CTRYAG	2 cut(s)	937, 961
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	4 cut(s)	25, 51, 73, 876
BlsI	GCNGC	4 cut(s)	26, 52, 74, 877
Bme1390I	CCNGG	2 cut(s)	103, 453
Bme18I	GGWCC	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	20, 613
BmrFI	CCNGG	2 cut(s)	103, 453
BpiI	GAAGAC	1 cut(s)	210
BsaHI	GRCGYC	2 cut(s)	56, 207
BsaJI	CCNNGG	4 cut(s)	14, 101, 132, 619
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 717, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 621
Bse118I	RCCGGY	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	103, 453
BseDI	CCNNGG	4 cut(s)	14, 101, 132, 619
BseGI	GGATG	3 cut(s)	228, 594, 615
BseLI	CCNNNNNNNGG	2 cut(s)	15, 621
BseRI	GAGGAG	1 cut(s)	866
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	11, 37, 887
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	3 cut(s)	5, 639, 762
BshNI	GGYRCC	1 cut(s)	611
BsiSI	CCGG	2 cut(s)	180, 812
BslFI	GGGAC	2 cut(s)	194, 637
BslI	CCNNNNNNNGG	2 cut(s)	15, 621
BsmAI	GTCTC	1 cut(s)	702
BsmBI	CGTCTC	1 cut(s)	702
BsmFI	GGGAC	2 cut(s)	194, 637
BsmI	GAATGC	2 cut(s)	666, 752
BsnI	GGCC	3 cut(s)	5, 639, 762
Bsp1286I	GDGCHC	2 cut(s)	140, 168
Bsp143I	GATC	3 cut(s)	61, 171, 235
BspACI	CCGC	6 cut(s)	22, 70, 73, 153, 383, 534
BspANI	GGCC	3 cut(s)	5, 639, 762
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	20, 613
BspT107I	GGYRCC	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	4 cut(s)	14, 101, 132, 619
BssMI	GATC	3 cut(s)	61, 171, 235
BssNI	GRCGYC	2 cut(s)	56, 207
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	132, 619
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	2 cut(s)	103, 453
Bst4CI	ACNGT	4 cut(s)	18, 466, 713, 941
BstACI	GRCGYC	2 cut(s)	56, 207
BstC8I	GCNNGC	1 cut(s)	190
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	3 cut(s)	228, 594, 615
BstFNI	CGCG	1 cut(s)	385
BstKTI	GATC	3 cut(s)	64, 174, 238
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	3 cut(s)	61, 171, 235
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 189, 863, 872
BstNI	CCWGG	2 cut(s)	103, 453
BstNSI	RCATGY	3 cut(s)	426, 438, 502
BstSCI	CCNGG	2 cut(s)	101, 451
BstSFI	CTRYAG	2 cut(s)	937, 961
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	3 cut(s)	11, 37, 887
BstV2I	GAAGAC	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	605
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	5, 639, 762
BtgI	CCRYGG	1 cut(s)	14
BtrI	CACGTC	1 cut(s)	374
BtsCI	GGATG	3 cut(s)	228, 594, 615
BtsI	GCAGTG	2 cut(s)	780, 840
BtsIMutI	CAGTG	3 cut(s)	780, 840, 946
Cac8I	GCNNGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	3 cut(s)	64, 194, 374
Csp6I	GTAC	3 cut(s)	106, 493, 714
CspCI	CAANNNNNGTGG	2 cut(s)	639, 674
CviAII	CATG	5 cut(s)	423, 435, 499, 641, 881
CviQI	GTAC	3 cut(s)	106, 493, 714
DpnI	GATC	3 cut(s)	63, 173, 237
DpnII	GATC	3 cut(s)	61, 171, 235
DraIII	CACNNNGTG	1 cut(s)	635
EaeI	YGGCCR	2 cut(s)	3, 637
EciI	GGCGGA	2 cut(s)	142, 549
Eco130I	CCWWGG	2 cut(s)	132, 619
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	61
EcoRI	GAATTC	2 cut(s)	516, 783
EcoRII	CCWGG	2 cut(s)	101, 451
EcoT14I	CCWWGG	2 cut(s)	132, 619
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	2 cut(s)	132, 619
Esp3I	CGTCTC	1 cut(s)	702
FaeI	CATG	5 cut(s)	426, 438, 502, 644, 884
FaqI	GGGAC	2 cut(s)	194, 637
FatI	CATG	5 cut(s)	422, 434, 498, 640, 880
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	4 cut(s)	25, 51, 73, 876
FokI	GGATG	3 cut(s)	215, 581, 602
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	4 cut(s)	25, 51, 73, 876
GluI	GCNGC	4 cut(s)	25, 51, 73, 876
HaeIII	GGCC	3 cut(s)	5, 639, 762
HapII	CCGG	2 cut(s)	180, 812
HgaI	GACGC	3 cut(s)	64, 194, 374
Hin1I	GRCGYC	2 cut(s)	56, 207
Hin1II	CATG	5 cut(s)	426, 438, 502, 644, 884
HinfI	GANTC	1 cut(s)	966
HpaII	CCGG	2 cut(s)	180, 812
HphI	GGTGA	2 cut(s)	56, 169
Hpy166II	GTNNAC	4 cut(s)	511, 661, 694, 716
Hpy188I	TCNGA	3 cut(s)	163, 223, 390
Hpy188III	TCNNGA	4 cut(s)	200, 340, 630, 671
Hpy8I	GTNNAC	4 cut(s)	511, 661, 694, 716
Hpy99I	CGWCG	3 cut(s)	58, 188, 375
HpyAV	CCTTC	2 cut(s)	282, 385
HpyCH4III	ACNGT	4 cut(s)	18, 466, 713, 941
HpyCH4IV	ACGT	4 cut(s)	195, 207, 373, 604
HpyCH4V	TGCA	4 cut(s)	422, 750, 773, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 189, 863, 872
HpySE526I	ACGT	4 cut(s)	195, 207, 373, 604
Hsp92I	GRCGYC	2 cut(s)	56, 207
Hsp92II	CATG	5 cut(s)	426, 438, 502, 644, 884
Kzo9I	GATC	3 cut(s)	61, 171, 235
LmnI	GCTCC	1 cut(s)	725
Lsp1109I	GCAGC	3 cut(s)	11, 37, 887
MaeII	ACGT	4 cut(s)	195, 207, 373, 604
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	3 cut(s)	63, 173, 237
MboI	GATC	3 cut(s)	61, 171, 235
MboII	GAAGA	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	140, 168
MlsI	TGGCCA	2 cut(s)	5, 639
MluCI	AATT	8 cut(s)	91, 147, 468, 516, 564, 681, 783, 983
MluNI	TGGCCA	2 cut(s)	5, 639
Mox20I	TGGCCA	2 cut(s)	5, 639
MscI	TGGCCA	2 cut(s)	5, 639
MseI	TTAA	8 cut(s)	288, 303, 458, 572, 684, 870, 926, 987
MslI	CAYNNNNRTG	1 cut(s)	603
Msp20I	TGGCCA	2 cut(s)	5, 639
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	2 cut(s)	180, 812
MspR9I	CCNGG	2 cut(s)	103, 453
Mva1269I	GAATGC	2 cut(s)	666, 752
MvaI	CCWGG	2 cut(s)	103, 453
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	4 cut(s)	78, 189, 863, 872
NdeII	GATC	3 cut(s)	61, 171, 235
NlaIII	CATG	5 cut(s)	426, 438, 502, 644, 884
NlaIV	GGNNCC	2 cut(s)	20, 613
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	3 cut(s)	426, 438, 502
PciI	ACATGT	2 cut(s)	434, 498
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 306
PctI	GAATGC	2 cut(s)	666, 752
PfeI	GAWTC	1 cut(s)	966
PflFI	GACNNNGTC	1 cut(s)	384
PkrI	GCNGC	4 cut(s)	26, 52, 74, 877
PscI	ACATGT	2 cut(s)	434, 498
PshBI	ATTAAT	2 cut(s)	684, 870
Psp6I	CCWGG	2 cut(s)	101, 451
PspGI	CCWGG	2 cut(s)	101, 451
PspN4I	GGNNCC	2 cut(s)	20, 613
PspPI	GGNCC	1 cut(s)	380
PsyI	GACNNNGTC	1 cut(s)	384
RsaI	GTAC	3 cut(s)	107, 494, 715
RsaNI	GTAC	3 cut(s)	106, 493, 714
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	8 cut(s)	288, 303, 458, 572, 684, 870, 926, 987
SatI	GCNGC	4 cut(s)	25, 51, 73, 876
Sau3AI	GATC	3 cut(s)	61, 171, 235
Sau96I	GGNCC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	103, 453
SduI	GDGCHC	2 cut(s)	140, 168
SfcI	CTRYAG	2 cut(s)	937, 961
SgrAI	CRCCGGYG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	603
Sse9I	AATT	8 cut(s)	91, 147, 468, 516, 564, 681, 783, 983
SsiI	CCGC	6 cut(s)	22, 70, 73, 153, 383, 534
SspI	AATATT	2 cut(s)	296, 738
StyD4I	CCNGG	2 cut(s)	101, 451
StyI	CCWWGG	2 cut(s)	132, 619
TaaI	ACNGT	4 cut(s)	18, 466, 713, 941
TaiI	ACGT	4 cut(s)	198, 210, 376, 607
TaqI	TCGA	4 cut(s)	30, 201, 309, 370
TasI	AATT	8 cut(s)	91, 147, 468, 516, 564, 681, 783, 983
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	966
Tru1I	TTAA	8 cut(s)	288, 303, 458, 572, 684, 870, 926, 987
Tru9I	TTAA	8 cut(s)	288, 303, 458, 572, 684, 870, 926, 987
TscAI	CASTG	3 cut(s)	780, 847, 946
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	3 cut(s)	24, 50, 875
Tsp45I	GTSAC	1 cut(s)	430
TspRI	CASTG	3 cut(s)	780, 847, 946
Tth111I	GACNNNGTC	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	380
VspI	ATTAAT	2 cut(s)	684, 870
XapI	RAATTY	3 cut(s)	147, 516, 783
XceI	RCATGY	3 cut(s)	426, 438, 502
XcmI	CCANNNNNNNNNTGG	3 cut(s)	139, 518, 605
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.