Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000762

Physical Location & Seq

Genomic Coordinates Reverse (-)

23643101 .. 23643370

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAATCCACCATTTCCTCTCCTATCTCCTCCACCAAGTCCTCACCTCTGTTATATTCGGCTTCCCATTCGCTCGGCTCCAAATCCCAATCTTTTCCTTCGCTTCCGTTGCTTCCGTCGCTTCAAACCCTCCGTTATCCGAGCTTCAAATCCAGAAGCTTCCTCGGATTTCCCTTCCGTTCGCGCCAAAACCAGCCTATCCGATCGATCAGAGTTCGAATCATCAGCCGGCTAACGACGGCTTCGTCCTCTAAGACGTTCCCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003872 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008443 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0061615 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00052 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04152 ko05230 map00010 map00030 map00051 map00052 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04152 map05230

Pfam Domains

Protein Families

PFK

Protein Analysis

90

Amino Acids

9.85

Weight (kDa)

12.0

Isoelectric Point (pI)

90.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26270 AT4G29220 AT4G32840 AT5G56630
fragaria_vesca	FvH4_1g06570 FvH4_2g35190 FvH4_6g32610 FvH4_6g32610 FvH4_6g32610
malus_domestica	MD02G1068900.v1.1 MD08G1109700.v1.1 MD09G1200000.v1.1 MD15G1089400.v1.1 MD17G1180600.v1.1 MD17G1180700.v1.1 MD17G1180800.v1.1
prunus_persica	Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.1G444000_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.3G056600_v2.0.a1 Prupe.7G216700_v2.0.a1
pyrus_communis	pycom02g05460 pycom07g22220 pycom09g11720 pycom15g08380 pycom17g19000 pycom17g19010 pycom17g19050
rosa_chinensis	RchiOBHm_Chr2g0092311 RchiOBHm_Chr2g0141061 RchiOBHm_Chr6g0306751
rosa_laevigata	RLG00000010768 RLG00000016296 RLG00000019912
rosa_multiflora	Rmu_sc0003289.1_g000020 Rmu_sc0010596.1_g000001 Rmu_sc0025856.1_g000001 Rmu_sc0032226.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104240 Rroxscaffold_2G00149270 Rroxscaffold_4G00313720 Rroxscaffold_7G00161490
rosa_rugosa	Rorug02G0024700 Rorug02G0366600 Rorug02G0366800 Rorug04G0176400 Rorug06G0352400 Rorug06G0352500
rosa_samantha	Rh2AG417900 Rh2BG070100 Rh2BG427800 Rh2CG071300 Rh2CG404200 Rh2DG069100 Rh2DG437400 Rh2DG437800 Rh4CG359100 Rh6AG464500 Rh6BG436300 Rh6CG478800 Rh6DG019000 Rh6DG465900 Rh6DG478600 Rh7DG340800
rosa_wichuraiana	Rw2G006170 Rw2G034210 Rw2G034270 Rw6G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	244
AccII	CGCG	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	125, 148
AluBI	AGCT	2 cut(s)	144, 159
AluI	AGCT	2 cut(s)	144, 159
AspLEI	GCGC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	36
AsuII	TTCGAA	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	79
Bpu14I	TTCGAA	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	229
Bsp119I	TTCGAA	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	203, 207
BspDI	ATCGAT	1 cut(s)	206
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	203, 207
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	206, 210
BstMBI	GATC	2 cut(s)	203, 207
BstMCI	CGRYCG	1 cut(s)	206
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 118
BstUI	CGCG	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	228
ClaI	ATCGAT	1 cut(s)	206
CviJI	RGCY	8 cut(s)	62, 78, 144, 159, 196, 228, 232, 242
CviKI_1	RGCY	8 cut(s)	62, 78, 144, 159, 196, 228, 232, 242
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	205, 209
DpnII	GATC	2 cut(s)	203, 207
DrdI	GACNNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	244
FaiI	YATR	1 cut(s)	55
GlaI	GCGC	1 cut(s)	185
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	2 cut(s)	5, 219
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	36
Hpy188I	TCNGA	4 cut(s)	141, 167, 203, 212
Hpy188III	TCNNGA	1 cut(s)	153
Hpy99I	CGWCG	2 cut(s)	121, 241
HpyAV	CCTTC	2 cut(s)	108, 184
HpyCH4IV	ACGT	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 118
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	257
HspAI	GCGC	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	203, 207
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	3 cut(s)	166, 206, 242
MaeII	ACGT	1 cut(s)	257
MalI	GATC	2 cut(s)	205, 209
MboI	GATC	2 cut(s)	203, 207
MnlI	CCTC	7 cut(s)	28, 40, 52, 57, 140, 173, 259
MroNI	GCCGGC	1 cut(s)	228
MspI	CCGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	109, 118
NaeI	GCCGGC	1 cut(s)	230
NdeII	GATC	2 cut(s)	203, 207
NgoMIV	GCCGGC	1 cut(s)	228
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	54
NspV	TTCGAA	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PdiI	GCCGGC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	5, 219
Ple19I	CGATCG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	79
PvuI	CGATCG	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	203, 207
SetI	ASST	4 cut(s)	49, 146, 161, 260
SfuI	TTCGAA	1 cut(s)	217
SgeI	CNNG	8 cut(s)	49, 86, 153, 165, 176, 195, 205, 241
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	206, 217
TfiI	GAWTC	2 cut(s)	5, 219
TspGWI	ACGGA	4 cut(s)	96, 105, 122, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.