Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003289.1

Orthogroup ID

OG0013831

Physical Location & Seq

Genomic Coordinates Reverse (-)

61048 .. 62387

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003289.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggggatcagattcatattgatggtgaacaaacaagggcagactcgtcttgcccaatactacgaatatctcaccctcgaagaaaggcgagctcttgaagctgaaatcgtccgcaaatgcctcgcccgcaacgagcaacagtgttcatttgtcgagcaccggaattacaaaattgtctacagacgctatgcttcactgtttttcctggttggagtagacaatgatgaaaatgagcttgcaatcttggaattcatacatctgcagaatgacctcctgatccatgttgctgccacgacctgcagcaccacatctcccaagctccgccgccacgacctgcatcactgcggaccaaacaaatccccgatccaatctgcccaaaaccccaccgccatcgatcgagatccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0012505 GO:0016020 GO:0030117 GO:0030119 GO:0030124 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

135

Amino Acids

15.73

Weight (kDa)

7.73

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19790
fragaria_vesca	FvH4_1g06580 FvH4_5g22770
malus_domestica	MD02G1069000.v1.1 MD15G1200600.v1.1
prunus_persica	Prupe.7G216600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092321
rosa_laevigata	RLG00000016297
rosa_multiflora	Rmu_sc0003289.1_g000015 Rmu_sc0003289.1_g000018
rosa_roxburghii	Rroxscaffold_2G00149260
rosa_rugosa	Rorug02G0024700
rosa_samantha	Rh2AG070700 Rh2BG070200 Rh2CG071400 Rh2DG069200
rosa_wichuraiana	Rw2G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	305, 342
AccI	GTMKAC	2 cut(s)	177, 216
AciI	CCGC	6 cut(s)	112, 127, 322, 325, 345, 387
AclWI	GGATC	4 cut(s)	14, 271, 358, 395
AcsI	RAATTY	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	4 cut(s)	92, 101, 235, 319
AluI	AGCT	4 cut(s)	92, 101, 235, 319
Alw21I	GWGCWC	2 cut(s)	94, 159
AlwI	GGATC	4 cut(s)	14, 271, 358, 395
ApeKI	GCWGC	2 cut(s)	287, 300
ApoI	RAATTY	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	37, 64
AvaII	GGWCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	94, 159
BbvI	GCAGC	2 cut(s)	274, 312
BccI	CCATC	2 cut(s)	16, 398
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	206
BfmI	CTRYAG	3 cut(s)	178, 260, 298
BfuAI	ACCTGC	2 cut(s)	305, 342
BisI	GCNGC	3 cut(s)	288, 301, 325
BlsI	GCNGC	3 cut(s)	289, 302, 326
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	346
Bsa29I	ATCGAT	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	393
BseJI	GATNNNNATC	1 cut(s)	399
BseXI	GCAGC	2 cut(s)	274, 312
Bsh1285I	CGRYCG	1 cut(s)	397
BshVI	ATCGAT	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	2 cut(s)	94, 159
BsiSI	CCGG	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	94, 159
Bsp143I	GATC	5 cut(s)	6, 276, 363, 394, 400
BspACI	CCGC	6 cut(s)	112, 127, 322, 325, 345, 387
BspDI	ATCGAT	1 cut(s)	393
BspMAI	CTGCAG	2 cut(s)	264, 302
BspMI	ACCTGC	2 cut(s)	305, 342
BspPI	GGATC	4 cut(s)	14, 271, 358, 395
BssMI	GATC	5 cut(s)	6, 276, 363, 394, 400
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	141, 198
BstC8I	GCNNGC	3 cut(s)	90, 127, 237
BstKTI	GATC	5 cut(s)	9, 279, 366, 397, 403
BstMBI	GATC	5 cut(s)	6, 276, 363, 394, 400
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 126
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	3 cut(s)	178, 260, 298
BstV1I	GCAGC	2 cut(s)	274, 312
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
Bsu15I	ATCGAT	1 cut(s)	393
BsuTUI	ATCGAT	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	3 cut(s)	146, 194, 340
BveI	ACCTGC	2 cut(s)	305, 342
Cac8I	GCNNGC	3 cut(s)	90, 127, 237
Cfr13I	GGNCC	1 cut(s)	347
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	1 cut(s)	192
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	4 cut(s)	92, 101, 235, 319
CviKI_1	RGCY	4 cut(s)	92, 101, 235, 319
DpnI	GATC	5 cut(s)	8, 278, 365, 396, 402
DpnII	GATC	5 cut(s)	6, 276, 363, 394, 400
EciI	GGCGGA	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	1 cut(s)	284
FaiI	YATR	4 cut(s)	17, 189, 254, 282
FatI	CATG	1 cut(s)	280
FauI	CCCGC	1 cut(s)	134
FblI	GTMKAC	2 cut(s)	177, 216
Fnu4HI	GCNGC	3 cut(s)	288, 301, 325
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	3 cut(s)	288, 301, 325
GluI	GCNGC	3 cut(s)	288, 301, 325
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	284
HinfI	GANTC	2 cut(s)	12, 43
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	2 cut(s)	37, 64
Hpy166II	GTNNAC	3 cut(s)	28, 178, 217
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	3 cut(s)	95, 274, 398
Hpy8I	GTNNAC	3 cut(s)	28, 178, 217
HpyCH4III	ACNGT	2 cut(s)	141, 198
HpyCH4V	TGCA	4 cut(s)	239, 262, 300, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 126
Hsp92II	CATG	1 cut(s)	284
Kzo9I	GATC	5 cut(s)	6, 276, 363, 394, 400
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	6 cut(s)	173, 191, 218, 287, 310, 347
Lsp1109I	GCAGC	2 cut(s)	274, 312
LweI	GCATC	1 cut(s)	346
MalI	GATC	5 cut(s)	8, 278, 365, 396, 402
MboI	GATC	5 cut(s)	6, 276, 363, 394, 400
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	94, 159
MluCI	AATT	3 cut(s)	163, 171, 248
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	86, 131, 281
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	98, 126
NdeII	GATC	5 cut(s)	6, 276, 363, 394, 400
NlaIII	CATG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	289, 302, 326
Ple19I	CGATCG	1 cut(s)	397
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	347
PstI	CTGCAG	2 cut(s)	264, 302
PsuI	RGATCY	1 cut(s)	400
PvuI	CGATCG	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	94
SatI	GCNGC	3 cut(s)	288, 301, 325
Sau3AI	GATC	5 cut(s)	6, 276, 363, 394, 400
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	2 cut(s)	94, 159
SetI	ASST	7 cut(s)	94, 103, 237, 273, 299, 321, 336
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	3 cut(s)	178, 260, 298
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	163, 171, 248
SsiI	CCGC	6 cut(s)	112, 127, 322, 325, 345, 387
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	141, 198
TaqI	TCGA	4 cut(s)	78, 153, 393, 397
TasI	AATT	3 cut(s)	163, 171, 248
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	12
TscAI	CASTG	3 cut(s)	146, 201, 347
TseI	GCWGC	2 cut(s)	287, 300
TspDTI	ATGAA	4 cut(s)	4, 135, 240, 241
TspRI	CASTG	3 cut(s)	146, 201, 347
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	2 cut(s)	177, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.