Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013831

Physical Location & Seq

Genomic Coordinates Forward (+)

5476903 .. 5479435

Gene Structure 2533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016297

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGGATCAGATTCATATTGATGGTGAACAAACAAGGGCAGACCCGTCTTGCCCAATACTACGAATATCTCACCCTCGAAGAAAGGCGAGCTCTTGAAGCTGAAATCGTCCGCAAATGCCTCGCCCGCAACGAGCAACAGTGTTCATTTGTCGAGCACCGGAATTACAAAATTGTCTACAGGCGCTATGCTTCACTGTTTTTCCTGGTTGGAGTAGACAATGATGAATATGCTGTTGCATCTGCGCGCTCTGCGATTATAAAAGCGCCGAAGAGAAGAAGACATCGAACGGGGCTCAGTACCAACAATAACTACTGCTCTGCCGCAGCCACCGCAACAGCCGCCACCGTTACCAACAACCACTCATCTTCTACGGCCTCAGCAATTACTTGTTTCAGTTATGGATTAATCACGGGTAAGTGCTGCGTTATTTGTCATCAGGAGTTTGTGGAAGAAGACCAGTGTGAGATGCTTCCGAAGTGCAATCACATGTATCACCATGAATGCATTAAACAGTGGCAAGCTACGGGCGCCCATTGTCCGCTTTGTCGTACCCCCATGAATGGTTCTTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0012505 GO:0016020 GO:0030117 GO:0030119 GO:0030124 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0098791 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

193

Amino Acids

21.83

Weight (kDa)

8.83

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	3 - 76	6.2e-19	Clathrin adaptor complex small chain
zf-rbx1	PF12678	140 - 184	7.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	141 - 184	7.5e-10	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19790
fragaria_vesca	FvH4_1g06580 FvH4_5g22770
malus_domestica	MD02G1069000.v1.1 MD15G1200600.v1.1
prunus_persica	Prupe.7G216600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092321
rosa_laevigata	RLG00000016297
rosa_multiflora	Rmu_sc0003289.1_g000015 Rmu_sc0003289.1_g000018
rosa_roxburghii	Rroxscaffold_2G00149260
rosa_rugosa	Rorug02G0024700
rosa_samantha	Rh2AG070700 Rh2BG070200 Rh2CG071400 Rh2DG069200
rosa_wichuraiana	Rw2G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	530
AccI	GTMKAC	2 cut(s)	177, 216
AccII	CGCG	1 cut(s)	247
AciI	CCGC	6 cut(s)	112, 127, 324, 333, 342, 542
AclWI	GGATC	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	2 cut(s)	301, 553
AfiI	CCNNNNNNNGG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	92, 101, 524
AluI	AGCT	3 cut(s)	92, 101, 524
Alw21I	GWGCWC	2 cut(s)	94, 159
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	326, 423
AseI	ATTAAT	1 cut(s)	407
AspLEI	GCGC	5 cut(s)	186, 247, 249, 268, 533
AsuHPI	GGTGA	3 cut(s)	37, 64, 488
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	2 cut(s)	94, 297
BbsI	GAAGAC	2 cut(s)	286, 462
Bbv12I	GWGCWC	2 cut(s)	94, 159
BbvCI	CCTCAGC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	338, 410
BccI	CCATC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	3 cut(s)	187, 269, 534
BisI	GCNGC	4 cut(s)	324, 327, 342, 424
BlsI	GCNGC	4 cut(s)	325, 328, 343, 425
Bme1390I	CCNGG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	2 cut(s)	248, 459
BpiI	GAAGAC	2 cut(s)	286, 462
Bpu10I	CCTNAGC	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	531
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMII	CTCAG	2 cut(s)	310, 393
BseNI	ACTGG	1 cut(s)	460
BsePI	GCGCGC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	338, 410
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	530
BsiHKAI	GWGCWC	2 cut(s)	94, 159
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	3 cut(s)	94, 159, 297
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	6 cut(s)	112, 127, 324, 333, 342, 542
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	2 cut(s)	309, 392
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	460
BssHII	GCGCGC	1 cut(s)	245
BssMI	GATC	1 cut(s)	6
BssNI	GRCGYC	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	4 cut(s)	141, 198, 349, 516
Bst6I	CTCTTC	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	531
BstC8I	GCNNGC	4 cut(s)	90, 127, 247, 522
BstDEI	CTNAG	3 cut(s)	296, 379, 573
BstFNI	CGCG	1 cut(s)	247
BstH2I	RGCGCY	3 cut(s)	187, 269, 534
BstHHI	GCGC	5 cut(s)	186, 247, 249, 268, 533
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 126, 251, 332, 341, 530
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	1 cut(s)	178
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	338, 410
BstV2I	GAAGAC	2 cut(s)	286, 462
BsuRI	GGCC	1 cut(s)	377
BtsIMutI	CAGTG	4 cut(s)	146, 194, 467, 521
Cac8I	GCNNGC	4 cut(s)	90, 127, 247, 522
CfoI	GCGC	5 cut(s)	186, 247, 249, 268, 533
Csp6I	GTAC	2 cut(s)	300, 552
CviAII	CATG	3 cut(s)	490, 500, 559
CviJI	RGCY	7 cut(s)	92, 101, 295, 329, 341, 377, 524
CviKI_1	RGCY	7 cut(s)	92, 101, 295, 329, 341, 377, 524
CviQI	GTAC	2 cut(s)	300, 552
DdeI	CTNAG	3 cut(s)	296, 379, 573
DinI	GGCGCC	1 cut(s)	532
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	2 cut(s)	94, 297
Eco53kI	GAGCTC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	509
EcoT38I	GRGCYC	2 cut(s)	94, 297
EgeI	GGCGCC	1 cut(s)	532
EheI	GGCGCC	1 cut(s)	532
FaeI	CATG	3 cut(s)	493, 503, 562
FaiI	YATR	8 cut(s)	17, 189, 231, 260, 402, 491, 501, 560
FatI	CATG	3 cut(s)	489, 499, 558
FauI	CCCGC	1 cut(s)	134
FblI	GTMKAC	2 cut(s)	177, 216
Fnu4HI	GCNGC	4 cut(s)	324, 327, 342, 424
FriOI	GRGCYC	2 cut(s)	94, 297
Fsp4HI	GCNGC	4 cut(s)	324, 327, 342, 424
GlaI	GCGC	5 cut(s)	185, 246, 248, 267, 532
GluI	GCNGC	4 cut(s)	324, 327, 342, 424
HaeII	RGCGCY	3 cut(s)	187, 269, 534
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	5 cut(s)	186, 247, 249, 268, 533
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	3 cut(s)	493, 503, 562
Hin6I	GCGC	5 cut(s)	184, 245, 247, 266, 531
HinP1I	GCGC	5 cut(s)	184, 245, 247, 266, 531
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	3 cut(s)	37, 64, 488
Hpy166II	GTNNAC	3 cut(s)	28, 178, 217
Hpy188I	TCNGA	2 cut(s)	11, 477
Hpy188III	TCNNGA	2 cut(s)	95, 440
Hpy8I	GTNNAC	3 cut(s)	28, 178, 217
HpyCH4III	ACNGT	4 cut(s)	141, 198, 349, 516
HpyCH4V	TGCA	3 cut(s)	239, 483, 507
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 126, 251, 332, 341, 530
HpyF3I	CTNAG	3 cut(s)	296, 379, 573
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	493, 503, 562
HspAI	GCGC	5 cut(s)	184, 245, 247, 266, 531
KasI	GGCGCC	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	6 cut(s)	166, 173, 191, 218, 425, 473
Lsp1109I	GCAGC	2 cut(s)	338, 410
LweI	GCATC	2 cut(s)	248, 459
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	8 cut(s)	92, 283, 288, 291, 360, 464, 467, 561
MhlI	GDGCHC	3 cut(s)	94, 159, 297
MluCI	AATT	3 cut(s)	163, 171, 384
Mly113I	GGCGCC	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	86, 131, 388
Mph1103I	ATGCAT	1 cut(s)	509
MseI	TTAA	2 cut(s)	407, 510
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	6 cut(s)	98, 126, 251, 332, 341, 530
NarI	GGCGCC	1 cut(s)	531
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	3 cut(s)	493, 503, 562
NlaIV	GGNNCC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	509
NspI	RCATGY	1 cut(s)	493
PauI	GCGCGC	1 cut(s)	245
PciI	ACATGT	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	509
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	4 cut(s)	325, 328, 343, 425
PluTI	GGCGCC	1 cut(s)	534
PscI	ACATGT	1 cut(s)	489
PshBI	ATTAAT	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	532
PteI	GCGCGC	1 cut(s)	245
RsaI	GTAC	2 cut(s)	301, 553
RsaNI	GTAC	2 cut(s)	300, 552
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	407, 510
SatI	GCNGC	4 cut(s)	324, 327, 342, 424
Sau3AI	GATC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	3 cut(s)	94, 159, 297
SetI	ASST	3 cut(s)	94, 103, 526
SfaNI	GCATC	2 cut(s)	248, 459
SfcI	CTRYAG	1 cut(s)	178
SfoI	GGCGCC	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	163, 171, 384
SsiI	CCGC	6 cut(s)	112, 127, 324, 333, 342, 542
SspDI	GGCGCC	1 cut(s)	530
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	4 cut(s)	141, 198, 349, 516
TaqI	TCGA	3 cut(s)	78, 153, 286
TasI	AATT	3 cut(s)	163, 171, 384
TauI	GCSGC	2 cut(s)	326, 344
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	407, 510
Tru9I	TTAA	2 cut(s)	407, 510
TscAI	CASTG	4 cut(s)	146, 201, 467, 521
TseI	GCWGC	2 cut(s)	326, 423
TspDTI	ATGAA	5 cut(s)	4, 135, 240, 516, 575
TspRI	CASTG	4 cut(s)	146, 201, 467, 521
VspI	ATTAAT	1 cut(s)	407
XceI	RCATGY	1 cut(s)	493
XmiI	GTMKAC	2 cut(s)	177, 216
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.