Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009537

Physical Location & Seq

Genomic Coordinates Forward (+)

8920447 .. 8923227

Gene Structure 2781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGCGGCTCCTACAGGGAACGGGCCAGTGATACCAATTCTAGGTTTCCTTACATGTGTGGCTTTTATCTATCTCTCCTTTGGAGATTTGTGGTTCGGTCTCAAAACGGAGGGCGAGTTAGCATTCGTGAAACGGAATGGGACACAGTTTGTGGTCGATGGTAAGGCTCTGTATGTGAATGGTTGGAACTCTTATTGGTTCATGGACCATGCTGTGAATGATCATAGTAGACATCGCGTTAGTGCTATGCTTGAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACATGGGCTTTTAATGATGGAGGCTACAATGCTCTTCAGATCTCTCCTGGTAGATTCGATGAACGAGTTTTCAAGGCCTTAGATCATGTAATCGCAGAGGCCAAAACACATGGTGTTAGGTTGCTTCTGAGCTTAGTGAATAACTTACAAGCTTATGGAGGGAAAACTCAGTACGTCAATTGGGCATGGCAGGAAGGTGTAGGCCTCAGCTCATCCAATGATTCCTTCTTCTTTGACCCATCTATCCGCAGATACTTCAAGAATTATCTCACGGTGCTGCTGACCCGTAAAAACTCTTTAACCGGGATTGAGTACAGAAACGACCCAACAATTTTTGCATGGGAGTTGATAAACGAGCCTCGCTGCATGTCTGATGTCTCTGGGGATACTCTACAAGACTGGATTAACGAAATGACAGCATTCATTAAATCAATTGACAACAAGCATCTTCTAACTGTTGGCTTGGAAGGGTTCTACGGTCCCAGTAGCCCAAAAAAGCTGACAGTTAACCCCGAACGGTGGGCCTCTGAGCTTGGGTCAGATTTTGTTCGAAACTCTGATTCGCCAAACATCGATTTTGCCTCGGTTCATATCTACCCTGATCACTGGTTTCACGATCAAGGGTTTGAAGAAAAACTCAAGTTCGTTGTAAAATGGATGCTATCTCACATTGAAGATGGGGACAAGGAACTGAAGAAGCCTGTTCTGTTCACCGAGTTTGGACTCTCGAATCTGAACAAGGACTACGATCCATCGCAGCGGGATCGGTTCTACAGAACCATCTTTGATGTTATTTACAAATCAGCCAAGAGGAAGCGGTCTGGTGCAGGAACACTAGTGTGGCAGTTTCTGATAGAAGGCATGGAAGGTTTCAACGATGACTTTGGAATAGTCCCATGGGAGCAAGACTCCATTCAGAGATTAATGATTGAACAGTCTTGCAGATTGAGTCGAATCACTGGACGCCATCTTCTTGACAAGAAGTCCATAGAAATGTGTTCCCATAGACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0032501 GO:0032502 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0048856 GO:0071554 GO:0071704 GO:0090351 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

433

Amino Acids

49.56

Weight (kDa)

6.47

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	42 - 379	1.8e-53	GH family 5 beta-mannosidase-like
Cellulase	PF00150	79 - 352	1.4e-13	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20680 AT4G28320
fragaria_vesca	FvH4_6g26240 FvH4_6g26240 FvH4_6g26240
malus_domestica	MD09G1246900.v1.1 MD17G1239800.v1.1
prunus_persica	Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1
pyrus_communis	pycom09g16420 pycom17g24310
rosa_chinensis	RchiOBHm_Chr2g0126631
rosa_laevigata	RLG00000018915
rosa_multiflora	Rmu_sc0002369.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117060
rosa_rugosa	Rorug02G0264100
rosa_samantha	Rh2AG321100 Rh2BG329400 Rh2CG309100
rosa_wichuraiana	Rw2G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	229
AccII	CGCG	1 cut(s)	237
AciI	CCGC	4 cut(s)	5, 535, 1048, 1105
AclWI	GGATC	2 cut(s)	1031, 1059
AcuI	CTGAAG	2 cut(s)	308, 1001
AcyI	GRCGYC	1 cut(s)	1252
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	461, 602
AfiI	CCNNNNNNNGG	2 cut(s)	41, 807
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	7 cut(s)	254, 361, 547, 917, 962, 1162, 1220
AhdI	GACNNNNNGTC	1 cut(s)	1270
AhlI	ACTAGT	1 cut(s)	1123
AjnI	CCWGG	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AleI	CACNNNNGTG	1 cut(s)	1126
AluBI	AGCT	7 cut(s)	257, 263, 420, 440, 498, 787, 820
AluI	AGCT	7 cut(s)	257, 263, 420, 440, 498, 787, 820
Alw26I	GTCTC	3 cut(s)	104, 278, 670
AlwI	GGATC	2 cut(s)	1031, 1059
AlwNI	CAGNNNCTG	1 cut(s)	1138
AoxI	GGCC	5 cut(s)	23, 363, 387, 490, 810
ApeKI	GCWGC	3 cut(s)	565, 651, 1045
AseI	ATTAAT	1 cut(s)	1211
AspS9I	GGNCC	4 cut(s)	23, 205, 767, 810
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	991
AsuII	TTCGAA	1 cut(s)	838
AvaII	GGWCC	2 cut(s)	205, 767
BbvCI	CCTCAGC	1 cut(s)	494
BbvI	GCAGC	3 cut(s)	552, 638, 1057
BccI	CCATC	7 cut(s)	152, 299, 535, 959, 1048, 1076, 1263
BcgI	CGANNNNNNTGC	2 cut(s)	1034, 1068
BciT130I	CCWGG	1 cut(s)	336
BciVI	GTATCC	1 cut(s)	667
BclI	TGATCA	2 cut(s)	220, 889
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	3 cut(s)	104, 278, 670
BcuI	ACTAGT	1 cut(s)	1123
BfaI	CTAG	2 cut(s)	41, 1124
BfmI	CTRYAG	2 cut(s)	12, 1060
BfuI	GTATCC	1 cut(s)	667
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	4 cut(s)	6, 566, 652, 1046
BlsI	GCNGC	4 cut(s)	7, 567, 653, 1047
Bme1390I	CCNGG	2 cut(s)	336, 592
Bme18I	GGWCC	2 cut(s)	205, 767
BmeRI	GACNNNNNGTC	1 cut(s)	1270
BmgT120I	GGNCC	4 cut(s)	23, 205, 767, 810
BmiI	GGNNCC	2 cut(s)	9, 769
BmrFI	CCNGG	2 cut(s)	336, 592
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	2 cut(s)	742, 936
BmuI	ACTGGG	1 cut(s)	765
BplI	GAGNNNNNCTC	2 cut(s)	1181, 1213
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	838
BpuEI	CTTGAG	1 cut(s)	911
BpuMI	CCSGG	1 cut(s)	592
Bsa29I	ATCGAT	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	1252
BsaI	GGTCTC	2 cut(s)	104, 278
BsaJI	CCNNGG	2 cut(s)	870, 1184
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 807
Bse1I	ACTGG	5 cut(s)	26, 692, 771, 899, 1252
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	861
BseDI	CCNNGG	2 cut(s)	870, 1184
BseGI	GGATG	2 cut(s)	500, 951
BseLI	CCNNNNNNNGG	2 cut(s)	41, 807
BseMII	CTCAG	4 cut(s)	407, 470, 508, 807
BseNI	ACTGG	5 cut(s)	26, 692, 771, 899, 1252
BseXI	GCAGC	3 cut(s)	552, 638, 1057
BsgI	GTGCAG	1 cut(s)	1134
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	5 cut(s)	25, 365, 389, 492, 812
BshVI	ATCGAT	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	591
BslFI	GGGAC	4 cut(s)	154, 753, 983, 1166
BslI	CCNNNNNNNGG	2 cut(s)	41, 807
BsmAI	GTCTC	3 cut(s)	104, 278, 670
BsmFI	GGGAC	4 cut(s)	154, 753, 983, 1166
BsmI	GAATGC	2 cut(s)	122, 707
BsnI	GGCC	5 cut(s)	25, 365, 389, 492, 812
Bso31I	GGTCTC	2 cut(s)	104, 278
Bsp119I	TTCGAA	1 cut(s)	838
Bsp143I	GATC	7 cut(s)	220, 327, 370, 889, 904, 1036, 1051
Bsp19I	CCATGG	1 cut(s)	1184
BspACI	CCGC	4 cut(s)	5, 535, 1048, 1105
BspANI	GGCC	5 cut(s)	25, 365, 389, 492, 812
BspCNI	CTCAG	4 cut(s)	408, 469, 507, 808
BspDI	ATCGAT	1 cut(s)	861
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	9, 769
BspPI	GGATC	2 cut(s)	1031, 1059
BspQI	GCTCTTC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	838
BspTNI	GGTCTC	2 cut(s)	104, 278
BsrI	ACTGG	5 cut(s)	26, 692, 771, 899, 1252
BssECI	CCNNGG	2 cut(s)	870, 1184
BssMI	GATC	7 cut(s)	220, 327, 370, 889, 904, 1036, 1051
BssNI	GRCGYC	1 cut(s)	1252
BssT1I	CCWWGG	1 cut(s)	1184
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	8 cut(s)	147, 280, 562, 745, 767, 793, 807, 1224
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	1252
BstBI	TTCGAA	1 cut(s)	838
BstDEI	CTNAG	6 cut(s)	367, 416, 421, 456, 494, 816
BstDSI	CCRYGG	1 cut(s)	1184
BstF5I	GGATG	2 cut(s)	500, 951
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	7 cut(s)	223, 330, 373, 892, 907, 1039, 1054
BstMAI	GTCTC	3 cut(s)	104, 278, 670
BstMBI	GATC	7 cut(s)	220, 327, 370, 889, 904, 1036, 1051
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	2 cut(s)	57, 658
BstSCI	CCNGG	2 cut(s)	334, 590
BstSFI	CTRYAG	2 cut(s)	12, 1060
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	552, 638, 1057
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
Bsu15I	ATCGAT	1 cut(s)	861
BsuI	GTATCC	1 cut(s)	667
BsuRI	GGCC	5 cut(s)	25, 365, 389, 492, 812
BsuTUI	ATCGAT	1 cut(s)	861
BtgI	CCRYGG	1 cut(s)	1184
BtgZI	GCGATG	2 cut(s)	218, 1026
BtsCI	GGATG	2 cut(s)	500, 951
BtsIMutI	CAGTG	4 cut(s)	33, 276, 892, 1245
CaiI	CAGNNNCTG	1 cut(s)	1138
Cfr13I	GGNCC	4 cut(s)	23, 205, 767, 810
ClaI	ATCGAT	1 cut(s)	861
CseI	GACGC	1 cut(s)	1260
Csp6I	GTAC	2 cut(s)	460, 601
CviQI	GTAC	2 cut(s)	460, 601
DdeI	CTNAG	6 cut(s)	367, 416, 421, 456, 494, 816
DpnI	GATC	7 cut(s)	222, 329, 372, 891, 906, 1038, 1053
DpnII	GATC	7 cut(s)	220, 327, 370, 889, 904, 1036, 1051
DraIII	CACNNNGTG	1 cut(s)	401
DriI	GACNNNNNGTC	1 cut(s)	1270
Eam1104I	CTCTTC	1 cut(s)	327
Eam1105I	GACNNNNNGTC	1 cut(s)	1270
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	1184
Eco147I	AGGCCT	2 cut(s)	365, 492
Eco31I	GGTCTC	2 cut(s)	104, 278
Eco47I	GGWCC	2 cut(s)	205, 767
Eco57I	CTGAAG	2 cut(s)	308, 1001
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	1184
ErhI	CCWWGG	1 cut(s)	1184
FaqI	GGGAC	4 cut(s)	154, 753, 983, 1166
FauI	CCCGC	1 cut(s)	1041
FbaI	TGATCA	2 cut(s)	220, 889
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	6, 566, 652, 1046
FokI	GGATG	2 cut(s)	487, 958
Fsp4HI	GCNGC	4 cut(s)	6, 566, 652, 1046
FspBI	CTAG	2 cut(s)	41, 1124
GluI	GCNGC	4 cut(s)	6, 566, 652, 1046
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	5 cut(s)	25, 365, 389, 492, 812
HapII	CCGG	1 cut(s)	591
HgaI	GACGC	1 cut(s)	1260
Hin1I	GRCGYC	1 cut(s)	1252
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	8 cut(s)	342, 509, 848, 1011, 1018, 1196, 1237, 1242
HpaI	GTTAAC	1 cut(s)	796
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	1 cut(s)	991
Hpy166II	GTNNAC	3 cut(s)	230, 796, 999
Hpy188I	TCNGA	9 cut(s)	327, 417, 661, 817, 829, 847, 1023, 1140, 1206
Hpy188III	TCNNGA	5 cut(s)	127, 547, 902, 1015, 1262
Hpy8I	GTNNAC	3 cut(s)	230, 796, 999
HpyAV	CCTTC	5 cut(s)	476, 523, 749, 1139, 1148
HpyCH4III	ACNGT	8 cut(s)	147, 280, 562, 745, 767, 793, 807, 1224
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	626, 654, 1115, 1230
HpyF3I	CTNAG	6 cut(s)	367, 416, 421, 456, 494, 816
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	1252
Ksp22I	TGATCA	2 cut(s)	220, 889
KspAI	GTTAAC	1 cut(s)	796
Kzo9I	GATC	7 cut(s)	220, 327, 370, 889, 904, 1036, 1051
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	3 cut(s)	13, 260, 1189
Lsp1109I	GCAGC	3 cut(s)	552, 638, 1057
LweI	GCATC	2 cut(s)	742, 936
MaeI	CTAG	2 cut(s)	41, 1124
MaeII	ACGT	1 cut(s)	462
MalI	GATC	7 cut(s)	222, 329, 372, 891, 906, 1038, 1053
MboI	GATC	7 cut(s)	220, 327, 370, 889, 904, 1036, 1051
MboII	GAAGA	7 cut(s)	314, 508, 728, 929, 974, 994, 1250
MfeI	CAATTG	2 cut(s)	466, 720
MflI	RGATCY	1 cut(s)	327
MluCI	AATT	5 cut(s)	36, 466, 550, 618, 720
MlyI	GAGTC	3 cut(s)	1005, 1190, 1246
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	9 cut(s)	103, 302, 379, 440, 503, 657, 823, 880, 1092
MseI	TTAA	6 cut(s)	300, 587, 693, 714, 795, 1211
MslI	CAYNNNNRTG	2 cut(s)	1126, 1280
MspA1I	CMGCKG	1 cut(s)	1048
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	2 cut(s)	336, 592
MunI	CAATTG	2 cut(s)	466, 720
Mva1269I	GAATGC	2 cut(s)	122, 707
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	237
NciI	CCSGG	1 cut(s)	592
NcoI	CCATGG	1 cut(s)	1184
NdeII	GATC	7 cut(s)	220, 327, 370, 889, 904, 1036, 1051
NlaIV	GGNNCC	2 cut(s)	9, 769
NspI	RCATGY	2 cut(s)	57, 658
NspV	TTCGAA	1 cut(s)	838
OliI	CACNNNNGTG	1 cut(s)	1126
PceI	AGGCCT	2 cut(s)	365, 492
PciI	ACATGT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	327
PctI	GAATGC	2 cut(s)	122, 707
PfeI	GAWTC	5 cut(s)	342, 509, 848, 1018, 1242
PkrI	GCNGC	4 cut(s)	7, 567, 653, 1047
PleI	GAGTC	3 cut(s)	1005, 1190, 1245
PpsI	GAGTC	3 cut(s)	1005, 1190, 1245
PscI	ACATGT	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	1211
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	9, 769
PspPI	GGNCC	4 cut(s)	23, 205, 767, 810
PsrI	GAACNNNNNNTAC	2 cut(s)	1016, 1048
PstNI	CAGNNNCTG	1 cut(s)	1138
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	2 cut(s)	461, 602
RsaNI	GTAC	2 cut(s)	460, 601
RseI	CAYNNNNRTG	2 cut(s)	1126, 1280
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	6 cut(s)	300, 587, 693, 714, 795, 1211
SatI	GCNGC	4 cut(s)	6, 566, 652, 1046
Sau3AI	GATC	7 cut(s)	220, 327, 370, 889, 904, 1036, 1051
Sau96I	GGNCC	4 cut(s)	23, 205, 767, 810
SchI	GAGTC	3 cut(s)	1005, 1190, 1246
ScrFI	CCNGG	2 cut(s)	336, 592
SfaNI	GCATC	2 cut(s)	742, 936
SfcI	CTRYAG	2 cut(s)	12, 1060
SfuI	TTCGAA	1 cut(s)	838
SinI	GGWCC	2 cut(s)	205, 767
SmiMI	CAYNNNNRTG	2 cut(s)	1126, 1280
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
SpeI	ACTAGT	1 cut(s)	1123
Sse9I	AATT	5 cut(s)	36, 466, 550, 618, 720
SseBI	AGGCCT	2 cut(s)	365, 492
SsiI	CCGC	4 cut(s)	5, 535, 1048, 1105
SspMI	CTAG	2 cut(s)	41, 1124
StuI	AGGCCT	2 cut(s)	365, 492
StyD4I	CCNGG	2 cut(s)	334, 590
StyI	CCWWGG	1 cut(s)	1184
TaaI	ACNGT	8 cut(s)	147, 280, 562, 745, 767, 793, 807, 1224
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	6 cut(s)	156, 345, 838, 861, 1016, 1240
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	5 cut(s)	36, 466, 550, 618, 720
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	342, 509, 848, 1018, 1242
Tru1I	TTAA	6 cut(s)	300, 587, 693, 714, 795, 1211
Tru9I	TTAA	6 cut(s)	300, 587, 693, 714, 795, 1211
TscAI	CASTG	4 cut(s)	33, 283, 899, 1252
TseI	GCWGC	3 cut(s)	565, 651, 1045
TspDTI	ATGAA	4 cut(s)	190, 363, 700, 866
TspGWI	ACGGA	2 cut(s)	122, 148
TspRI	CASTG	4 cut(s)	33, 283, 899, 1252
VpaK11BI	GGWCC	2 cut(s)	205, 767
VspI	ATTAAT	1 cut(s)	1211
XceI	RCATGY	2 cut(s)	57, 658
XmiI	GTMKAC	1 cut(s)	229
XspI	CTAG	2 cut(s)	41, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.