Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009537

Physical Location & Seq

Genomic Coordinates Reverse (-)

43070835 .. 43078368

Gene Structure 7534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG329400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGATTTTGCGGTCCTCTAGATTATATAAAAAGAAAATGGTAGTAGCAGGGAATGGTCTTTTCTACCCCATTATTGGATTCGCTTCATGTTTGGCTTTCCTCTACATGTCCTTTCACTCCTTTAGTGACTTGAGGAGCGATTTTCGTGAAGAAGAACATCAGTTGGCTTTTGTGAAGAGGAATGGGACTCAGTTCACCTTGGAGGGTAAACCATTTTACATTAATGGATGGAATTCTTACTGGTTAATGTATCATGCTGTGGATGAGTATAGCAGACCCAGAGTCCGAGAAATGCTGCAAGCCGGTGCAAAAATGGGTCTTACTCTCTGTCGAACTTGGGCCTTTAATGATGGTGAGTACAATGCTCTCCAGCTTTCCCCTGGTCAGTTCGATGAGCGAGTTTTTAAGGCTTTGGATCATGTTATTGTAGAAGCAAGACAACAGGGCGTCAGGTTGCTTCTTTGCTTAGTTAATAACTTGCAAAATTATGGTGGGAAGTCTCAGTATGTAAGGTGGGCCTGGCAAGAAGGTGTTGGTTTGAGCTCATCCAATGATTCATTTTTCTTTGACCCATCCATTCGCAATTATTTCAAGAGTTACATAAAGACTATCCTAACCAGGAAGAATACACTCAATGGAATTGAATATAGAGATGACCCCACCATTTTTGCGTGGGAGTTAATAAATGAACCCCGTTGCAGCACTGATGCCTCAGGCGATACTCTCCAAGATTGGATAGAAGAAATGTCAGAATTTGTGAAAGTAATTGACAAGAAACATCTACTGACTGTGGGCCTGGAAGGATTTTATGGTCCTAAGAACCCCAAAGCTTTGACTGTGAATCCTGAACAGTGGGCATCCCGACTTGGATCAGATTTCATTCGCAACTCCAAGATCCCCAGCATTGATTTTGCTTCTGTTCATATGTACCCTGACCACTGGTTTCATGATCTAGAAGTGGAGGACCACCTGAAGTTTGTCACCAAGTGGATGCTTTCTCACATTGAAGATGGTGAGAAAGAACTTAACAAACCAGTCATGTTCACCGAATTTGGCTTGGCAGACCAGCTTGATAGATTTTACAAAACTATTTTTGATGTCATTTACAAATCTGCAAAGAAACACCAGGCTGGAGCAGGTGCTTTAGCGTGGCAGTTTTTGGTAGCAGGAATGGACAAGTATAATGATGAATTTGGGATTGTTCCATGGGAAAGGCCATCTACCTATAAGCTGATAATAGAACAAACATGTAGGTTGGCTAAAATCCAGGGTCCAATTTTAGAACAGCGAAATTTGAAAGAGTTGTGCCTGCAAAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

440

Amino Acids

51.15

Weight (kDa)

6.84

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	57 - 387	3.7e-49	GH family 5 beta-mannosidase-like
Cellulase	PF00150	94 - 375	1.2e-11	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20680 AT4G28320
fragaria_vesca	FvH4_6g26240 FvH4_6g26240 FvH4_6g26240
malus_domestica	MD09G1246900.v1.1 MD17G1239800.v1.1
prunus_persica	Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1
pyrus_communis	pycom09g16420 pycom17g24310
rosa_chinensis	RchiOBHm_Chr2g0126631
rosa_laevigata	RLG00000018915
rosa_multiflora	Rmu_sc0002369.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117060
rosa_rugosa	Rorug02G0264100
rosa_samantha	Rh2AG321100 Rh2BG329400 Rh2CG309100
rosa_wichuraiana	Rw2G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1127
Acc36I	ACCTGC	1 cut(s)	1127
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	3 cut(s)	423, 877, 889
AcsI	RAATTY	5 cut(s)	232, 752, 1049, 1190, 1291
AcuI	CTGAAG	1 cut(s)	992
AcyI	GRCGYC	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	987
AfaI	GTAC	2 cut(s)	359, 929
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	2 cut(s)	105, 1247
AgsI	TTSAA	4 cut(s)	592, 644, 1007, 1297
AhdI	GACNNNNNGTC	1 cut(s)	281
AjnI	CCWGG	6 cut(s)	379, 518, 617, 795, 1125, 1266
AluBI	AGCT	5 cut(s)	373, 543, 830, 1069, 1231
AluI	AGCT	5 cut(s)	373, 543, 830, 1069, 1231
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	3 cut(s)	423, 877, 889
AoxI	GGCC	4 cut(s)	339, 516, 793, 1214
ApeKI	GCWGC	2 cut(s)	295, 699
ApoI	RAATTY	5 cut(s)	232, 752, 1049, 1190, 1291
AseI	ATTAAT	1 cut(s)	222
AspS9I	GGNCC	7 cut(s)	12, 339, 516, 793, 812, 964, 1271
AsuHPI	GGTGA	5 cut(s)	187, 365, 973, 1025, 1036
AvaII	GGWCC	4 cut(s)	12, 812, 964, 1271
AxyI	CCTNAGG	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	282, 711
BccI	CCATC	5 cut(s)	222, 344, 580, 1004, 1225
BciT130I	CCWGG	6 cut(s)	381, 520, 619, 797, 1127, 1268
BcoDI	GTCTC	1 cut(s)	504
BfaI	CTAG	2 cut(s)	18, 953
BfuAI	ACCTGC	1 cut(s)	1127
BisI	GCNGC	2 cut(s)	296, 700
BlsI	GCNGC	2 cut(s)	297, 701
Bme1390I	CCNGG	6 cut(s)	381, 520, 619, 797, 1127, 1268
Bme18I	GGWCC	4 cut(s)	12, 812, 964, 1271
BmeRI	GACNNNNNGTC	1 cut(s)	281
BmgT120I	GGNCC	7 cut(s)	12, 339, 516, 793, 812, 964, 1271
BmiI	GGNNCC	1 cut(s)	1272
BmrFI	CCNGG	6 cut(s)	381, 520, 619, 797, 1127, 1268
BmsI	GCATC	3 cut(s)	697, 866, 981
BpmI	CTGGAG	2 cut(s)	353, 1152
BpuEI	CTTGAG	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	4 cut(s)	198, 379, 1205, 1267
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	3 cut(s)	245, 944, 1034
Bse21I	CCTNAGG	1 cut(s)	712
BseBI	CCWGG	6 cut(s)	381, 520, 619, 797, 1127, 1268
BseDI	CCNNGG	4 cut(s)	198, 379, 1205, 1267
BseGI	GGATG	6 cut(s)	233, 268, 545, 572, 857, 996
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	3 cut(s)	203, 515, 726
BseNI	ACTGG	3 cut(s)	245, 944, 1034
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	282, 711
BseYI	CCCAGC	1 cut(s)	899
BshFI	GGCC	4 cut(s)	341, 518, 795, 1216
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	4 cut(s)	341, 518, 795, 1216
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	4 cut(s)	415, 869, 894, 949
Bsp19I	CCATGG	1 cut(s)	1205
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	4 cut(s)	341, 518, 795, 1216
BspCNI	CTCAG	3 cut(s)	202, 514, 725
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	1 cut(s)	1272
BspMI	ACCTGC	1 cut(s)	1127
BspPI	GGATC	3 cut(s)	423, 877, 889
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	245, 944, 1034
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	4 cut(s)	198, 379, 1205, 1267
BssMI	GATC	4 cut(s)	415, 869, 894, 949
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	198, 1205
Bst2UI	CCWGG	6 cut(s)	381, 520, 619, 797, 1127, 1268
Bst4CI	ACNGT	4 cut(s)	790, 838, 852, 1320
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	447
BstC8I	GCNNGC	2 cut(s)	300, 1310
BstDEI	CTNAG	5 cut(s)	189, 466, 501, 712, 816
BstDSI	CCRYGG	1 cut(s)	1205
BstF5I	GGATG	6 cut(s)	233, 268, 545, 572, 857, 996
BstKTI	GATC	4 cut(s)	418, 872, 897, 952
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	4 cut(s)	415, 869, 894, 949
BstNI	CCWGG	6 cut(s)	381, 520, 619, 797, 1127, 1268
BstNSI	RCATGY	2 cut(s)	109, 1251
BstSCI	CCNGG	6 cut(s)	379, 518, 617, 795, 1125, 1266
BstV1I	GCAGC	2 cut(s)	282, 711
BstX2I	RGATCY	1 cut(s)	894
BstYI	RGATCY	1 cut(s)	894
Bsu36I	CCTNAGG	1 cut(s)	712
BsuRI	GGCC	4 cut(s)	341, 518, 795, 1216
BtgI	CCRYGG	1 cut(s)	1205
BtsCI	GGATG	6 cut(s)	233, 268, 545, 572, 857, 996
BtsIMutI	CAGTG	3 cut(s)	702, 857, 937
BveI	ACCTGC	1 cut(s)	1127
Cac8I	GCNNGC	2 cut(s)	300, 1310
CciI	TCATGA	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	7 cut(s)	12, 339, 516, 793, 812, 964, 1271
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	358, 928
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	8 cut(s)	87, 106, 254, 419, 947, 1039, 1206, 1248
CviQI	GTAC	2 cut(s)	358, 928
DdeI	CTNAG	5 cut(s)	189, 466, 501, 712, 816
DpnI	GATC	4 cut(s)	417, 871, 896, 951
DpnII	GATC	4 cut(s)	415, 869, 894, 949
DraIII	CACNNNGTG	1 cut(s)	987
DriI	GACNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	543
Eco130I	CCWWGG	2 cut(s)	198, 1205
Eco24I	GRGCYC	1 cut(s)	545
Eco47I	GGWCC	4 cut(s)	12, 812, 964, 1271
Eco53kI	GAGCTC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	992
Eco81I	CCTNAGG	1 cut(s)	712
EcoICRI	GAGCTC	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	232
EcoRII	CCWGG	6 cut(s)	379, 518, 617, 795, 1125, 1266
EcoT14I	CCWWGG	2 cut(s)	198, 1205
EcoT38I	GRGCYC	1 cut(s)	545
ErhI	CCWWGG	2 cut(s)	198, 1205
FaeI	CATG	8 cut(s)	90, 109, 257, 422, 950, 1042, 1209, 1251
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	8 cut(s)	86, 105, 253, 418, 946, 1038, 1205, 1247
FauNDI	CATATG	1 cut(s)	924
Fnu4HI	GCNGC	2 cut(s)	296, 700
FokI	GGATG	6 cut(s)	240, 275, 532, 559, 844, 1003
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	2 cut(s)	296, 700
FspBI	CTAG	2 cut(s)	18, 953
GluI	GCNGC	2 cut(s)	296, 700
GsaI	CCCAGC	1 cut(s)	903
GsuI	CTGGAG	2 cut(s)	353, 1152
HaeIII	GGCC	4 cut(s)	341, 518, 795, 1216
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	1 cut(s)	436
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	8 cut(s)	90, 109, 257, 422, 950, 1042, 1209, 1251
HindIII	AAGCTT	1 cut(s)	828
HinfI	GANTC	5 cut(s)	78, 187, 282, 554, 841
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	5 cut(s)	187, 365, 973, 1025, 1036
Hpy166II	GTNNAC	3 cut(s)	195, 209, 1044
Hpy188I	TCNGA	3 cut(s)	287, 751, 874
Hpy188III	TCNNGA	7 cut(s)	18, 146, 592, 845, 861, 947, 953
Hpy8I	GTNNAC	3 cut(s)	195, 209, 1044
HpyAV	CCTTC	2 cut(s)	521, 794
HpyCH4III	ACNGT	4 cut(s)	790, 838, 852, 1320
HpyCH4V	TGCA	6 cut(s)	298, 308, 481, 699, 1115, 1312
HpyF3I	CTNAG	5 cut(s)	189, 466, 501, 712, 816
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	8 cut(s)	90, 109, 257, 422, 950, 1042, 1209, 1251
Kzo9I	GATC	4 cut(s)	415, 869, 894, 949
LmnI	GCTCC	2 cut(s)	135, 1133
Lsp1109I	GCAGC	2 cut(s)	282, 711
LweI	GCATC	3 cut(s)	697, 866, 981
MaeI	CTAG	2 cut(s)	18, 953
MaeIII	GTNAC	3 cut(s)	125, 596, 979
MalI	GATC	4 cut(s)	417, 871, 896, 951
MboI	GATC	4 cut(s)	415, 869, 894, 949
MboII	GAAGA	6 cut(s)	161, 164, 187, 634, 752, 1019
MflI	RGATCY	1 cut(s)	894
MhlI	GDGCHC	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	181, 291
MnlI	CCTC	7 cut(s)	25, 110, 126, 171, 196, 721, 955
MseI	TTAA	7 cut(s)	222, 245, 345, 405, 471, 680, 1026
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	6 cut(s)	381, 520, 619, 797, 1127, 1268
MvaI	CCWGG	6 cut(s)	381, 520, 619, 797, 1127, 1268
NcoI	CCATGG	1 cut(s)	1205
NdeI	CATATG	1 cut(s)	924
NdeII	GATC	4 cut(s)	415, 869, 894, 949
NlaIII	CATG	8 cut(s)	90, 109, 257, 422, 950, 1042, 1209, 1251
NlaIV	GGNNCC	1 cut(s)	1272
NmuCI	GTSAC	2 cut(s)	125, 979
NspI	RCATGY	2 cut(s)	109, 1251
PagI	TCATGA	1 cut(s)	946
PaqCI	CACCTGC	1 cut(s)	1127
PciI	ACATGT	2 cut(s)	105, 1247
PfeI	GAWTC	3 cut(s)	78, 554, 841
PkrI	GCNGC	2 cut(s)	297, 701
PleI	GAGTC	2 cut(s)	181, 290
PpsI	GAGTC	2 cut(s)	181, 290
PscI	ACATGT	2 cut(s)	105, 1247
PshBI	ATTAAT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	545
Psp6I	CCWGG	6 cut(s)	379, 518, 617, 795, 1125, 1266
PspFI	CCCAGC	1 cut(s)	899
PspGI	CCWGG	6 cut(s)	379, 518, 617, 795, 1125, 1266
PspN4I	GGNNCC	1 cut(s)	1272
PspPI	GGNCC	7 cut(s)	12, 339, 516, 793, 812, 964, 1271
PsuI	RGATCY	1 cut(s)	894
RsaI	GTAC	2 cut(s)	359, 929
RsaNI	GTAC	2 cut(s)	358, 928
SacI	GAGCTC	1 cut(s)	545
SaqAI	TTAA	7 cut(s)	222, 245, 345, 405, 471, 680, 1026
SatI	GCNGC	2 cut(s)	296, 700
Sau3AI	GATC	4 cut(s)	415, 869, 894, 949
Sau96I	GGNCC	7 cut(s)	12, 339, 516, 793, 812, 964, 1271
SchI	GAGTC	2 cut(s)	181, 291
ScrFI	CCNGG	6 cut(s)	381, 520, 619, 797, 1127, 1268
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	3 cut(s)	697, 866, 981
SinI	GGWCC	4 cut(s)	12, 812, 964, 1271
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	2 cut(s)	18, 953
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	6 cut(s)	379, 518, 617, 795, 1125, 1266
StyI	CCWWGG	2 cut(s)	198, 1205
TaaI	ACNGT	4 cut(s)	790, 838, 852, 1320
TaqI	TCGA	2 cut(s)	331, 390
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	3 cut(s)	78, 554, 841
Tru1I	TTAA	7 cut(s)	222, 245, 345, 405, 471, 680, 1026
Tru9I	TTAA	7 cut(s)	222, 245, 345, 405, 471, 680, 1026
TscAI	CASTG	3 cut(s)	709, 857, 944
TseFI	GTSAC	2 cut(s)	125, 979
TseI	GCWGC	2 cut(s)	295, 699
Tsp45I	GTSAC	2 cut(s)	125, 979
TspDTI	ATGAA	7 cut(s)	75, 546, 702, 868, 911, 935, 1203
TspRI	CASTG	3 cut(s)	709, 857, 944
VpaK11BI	GGWCC	4 cut(s)	12, 812, 964, 1271
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	5 cut(s)	232, 752, 1049, 1190, 1291
XbaI	TCTAGA	2 cut(s)	17, 952
XceI	RCATGY	2 cut(s)	109, 1251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	18, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.