Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009537

Physical Location & Seq

Genomic Coordinates Reverse (-)

14018183 .. 14020323

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGTTCCCACAAGGAACAGGCCAATGCTACGAATTCTAGGTTTTTTTATATGTGCAGCTTTCATCTATCTATCATTTCGAGATTTGTGGTTGAATCACAAAGGGAAAGCAAAGTTAGGGTTTGTGAAAAGGAACGGAACTCAGTTTGTGGTGGATGATAAGCCTCTTTATGTAAATGGGTGGAACTCGTATTGGTTCATGGACCATGCGGTTGATGAACATAGCAGAAACCTTGTCGGTGAAATGCTTGAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACTTGGGCTTTCAATGACGGTGGCTACAATGCTCTTCAGATCTCTCCTGGCCGATTCGATGAGCGAGTCTTTCAGGCTTTGGATCATGTAATTGCAGAAGCGAGAAAGCATGATGTTAGATTGTTGCTTAGCTTAGTGAACAACTTGCAAGCTTATGGAGGGAAGACTCAGTATGTGAAATGGGCATGGCAAGAAGGTGTTGGTCTTAGTTCTTCCAATGATTCCTTCTTCTTTGATCCATCTATCCGCAATTACTTCAAGAATTATCTCAAGGTTCTGCTCACCAGGAAGAACTCTGTAACGGGAATAGAGTACAGAAACGATCCTACGATTTTCGCTTGGGAGTTGATAAACGAGCCTCGATGCACGACTGATGTCTCTGGCAAAACTCTCCAAGATTGGATAGACGAAATGACGGGATTCATTAAGTCAATCGATGACAAGCATCTCCTCACAGTAGGTCTGGAAGGCTTCTATGGTCCTAATAGCCCGAAAGGGCTCACAGTTAATCCAGAACAGTGGGCATCCCAGCTCGGAACAGACTTTGTTCAAAACTCTAACTCCTCAAACATAGATTTTGCATCCGTTCATATCTACCCTGATCACTGGTTTCATAATCAGACATTTGAAGAGAAGCTAAAGTTTGTGGTGAAATGGATGCAATCTCACATAGAAGATGGATTGAAAGAACTAAAGAAGCCAGTTCTCTTCACAGAGTTTGGCCTATCAAACCAGAACAAGGACTACGAACCATCGCAGCGAGATAAGTTCTACAGAATCATCTTCGACGTGGTTTACAAATCAGCCAAAAGAAAGAAGTCAGGTGCAGGCACATTAGTGTGGCAGCTATTCATGGAAGGCATGGAAACATTCAACGATGACTTTGGGATTGTTCCACATGAACAAGATTCCATTTACAAATTGATGATAGAACAATCTTGCAGATTGGGTAAAGTCACAGGACGTCTTAAGGAACAAAAGTTGAAAGAACTTTGTTCTCACAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0032501 GO:0032502 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0048856 GO:0071554 GO:0071704 GO:0090351 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

431

Amino Acids

49.9

Weight (kDa)

8.38

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	41 - 377	4.3e-51	GH family 5 beta-mannosidase-like
Cellulase	PF00150	87 - 377	3.3e-14	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20680 AT4G28320
fragaria_vesca	FvH4_6g26240 FvH4_6g26240 FvH4_6g26240
malus_domestica	MD09G1246900.v1.1 MD17G1239800.v1.1
prunus_persica	Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1
pyrus_communis	pycom09g16420 pycom17g24310
rosa_chinensis	RchiOBHm_Chr2g0126631
rosa_laevigata	RLG00000018915
rosa_multiflora	Rmu_sc0002369.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117060
rosa_rugosa	Rorug02G0264100
rosa_samantha	Rh2AG321100 Rh2BG329400 Rh2CG309100
rosa_wichuraiana	Rw2G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1252
AciI	CCGC	2 cut(s)	209, 532
AclWI	GGATC	3 cut(s)	375, 515, 602
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	1249
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	1 cut(s)	1024
AflII	CTTAAG	1 cut(s)	1253
AgsI	TTSAA	9 cut(s)	94, 251, 298, 544, 836, 914, 970, 1159, 1270
AjiI	CACGTC	1 cut(s)	1075
AjnI	CCWGG	2 cut(s)	331, 569
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AleI	CACNNNNGTG	1 cut(s)	1121
AluBI	AGCT	8 cut(s)	59, 254, 260, 417, 437, 817, 922, 1132
AluI	AGCT	8 cut(s)	59, 254, 260, 417, 437, 817, 922, 1132
Alw26I	GTCTC	2 cut(s)	275, 667
AlwI	GGATC	3 cut(s)	375, 515, 602
AoxI	GGCC	3 cut(s)	20, 334, 1006
ApeKI	GCWGC	3 cut(s)	56, 1042, 1129
ApoI	RAATTY	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	202, 764
AsuHPI	GGTGA	3 cut(s)	251, 559, 946
AvaII	GGWCC	2 cut(s)	202, 764
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	68, 1054, 1141
BccI	CCATC	3 cut(s)	532, 956, 1045
BciT130I	CCWGG	2 cut(s)	333, 571
BclI	TGATCA	1 cut(s)	886
BcoDI	GTCTC	2 cut(s)	275, 667
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	1057
BfrI	CTTAAG	1 cut(s)	1253
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	3 cut(s)	57, 1043, 1130
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	3 cut(s)	58, 1044, 1131
Bme1390I	CCNGG	2 cut(s)	333, 571
Bme18I	GGWCC	2 cut(s)	202, 764
BmgBI	CACGTC	1 cut(s)	1075
BmgT120I	GGNCC	2 cut(s)	202, 764
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	333, 571
BmsI	GCATC	5 cut(s)	638, 739, 818, 875, 933
BoxI	GACNNNNGTC	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	539
Bsa29I	ATCGAT	1 cut(s)	720
BsaHI	GRCGYC	1 cut(s)	1249
BsaI	GGTCTC	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	1024
Bse1I	ACTGG	2 cut(s)	896, 986
BseBI	CCWGG	2 cut(s)	333, 571
BseCI	ATCGAT	1 cut(s)	720
BseGI	GGATG	4 cut(s)	160, 809, 866, 948
BseLI	CCNNNNNNNGG	1 cut(s)	1024
BseMII	CTCAG	2 cut(s)	155, 467
BseNI	ACTGG	2 cut(s)	896, 986
BseRI	GAGGAG	2 cut(s)	725, 838
BseXI	GCAGC	3 cut(s)	68, 1054, 1141
BseYI	CCCAGC	1 cut(s)	813
BsgI	GTGCAG	2 cut(s)	75, 1131
BshFI	GGCC	3 cut(s)	22, 336, 1008
BshVI	ATCGAT	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	1024
BsmAI	GTCTC	2 cut(s)	275, 667
BsnI	GGCC	3 cut(s)	22, 336, 1008
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	5 cut(s)	324, 367, 520, 607, 886
Bsp1720I	GCTNAGC	1 cut(s)	413
BspACI	CCGC	2 cut(s)	209, 532
BspANI	GGCC	3 cut(s)	22, 336, 1008
BspCNI	CTCAG	2 cut(s)	154, 466
BspDI	ATCGAT	1 cut(s)	720
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	375, 515, 602
BspQI	GCTCTTC	1 cut(s)	324
BspTI	CTTAAG	1 cut(s)	1253
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	896, 986
BssMI	GATC	5 cut(s)	324, 367, 520, 607, 886
BssNI	GRCGYC	1 cut(s)	1249
Bst2UI	CCWGG	2 cut(s)	333, 571
Bst4CI	ACNGT	5 cut(s)	277, 305, 742, 790, 804
Bst6I	CTCTTC	3 cut(s)	324, 909, 998
BstACI	GRCGYC	1 cut(s)	1249
BstAFI	CTTAAG	1 cut(s)	1253
BstC8I	GCNNGC	2 cut(s)	435, 1114
BstDEI	CTNAG	5 cut(s)	141, 413, 418, 453, 491
BstF5I	GGATG	4 cut(s)	160, 809, 866, 948
BstKTI	GATC	5 cut(s)	327, 370, 523, 610, 889
BstMAI	GTCTC	2 cut(s)	275, 667
BstMBI	GATC	5 cut(s)	324, 367, 520, 607, 886
BstNI	CCWGG	2 cut(s)	333, 571
BstPAI	GACNNNNGTC	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	331, 569
BstSFI	CTRYAG	1 cut(s)	1057
BstV1I	GCAGC	3 cut(s)	68, 1054, 1141
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	324
Bsu15I	ATCGAT	1 cut(s)	720
BsuRI	GGCC	3 cut(s)	22, 336, 1008
BsuTUI	ATCGAT	1 cut(s)	720
BtgZI	GCGATG	1 cut(s)	1023
BtrI	CACGTC	1 cut(s)	1075
BtsCI	GGATG	4 cut(s)	160, 809, 866, 948
BtsIMutI	CAGTG	3 cut(s)	273, 809, 889
Cac8I	GCNNGC	2 cut(s)	435, 1114
Cfr13I	GGNCC	2 cut(s)	202, 764
ClaI	ATCGAT	1 cut(s)	720
Csp6I	GTAC	1 cut(s)	598
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	8 cut(s)	199, 206, 371, 395, 471, 1138, 1147, 1184
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	5 cut(s)	141, 413, 418, 453, 491
DpnI	GATC	5 cut(s)	326, 369, 522, 609, 888
DpnII	GATC	5 cut(s)	324, 367, 520, 607, 886
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	3 cut(s)	324, 909, 998
EarI	CTCTTC	3 cut(s)	324, 909, 998
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	202, 764
Eco57I	CTGAAG	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	331, 569
EcoT38I	GRGCYC	1 cut(s)	786
FaeI	CATG	8 cut(s)	202, 209, 374, 398, 474, 1141, 1150, 1187
FatI	CATG	8 cut(s)	198, 205, 370, 394, 470, 1137, 1146, 1183
FbaI	TGATCA	1 cut(s)	886
Fnu4HI	GCNGC	3 cut(s)	57, 1043, 1130
FokI	GGATG	4 cut(s)	167, 796, 853, 955
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	3 cut(s)	57, 1043, 1130
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	3 cut(s)	57, 1043, 1130
GsaI	CCCAGC	1 cut(s)	817
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	22, 336, 1008
Hin1I	GRCGYC	1 cut(s)	1249
Hin1II	CATG	8 cut(s)	202, 209, 374, 398, 474, 1141, 1150, 1187
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	8 cut(s)	94, 339, 351, 451, 506, 705, 1062, 1193
HphI	GGTGA	3 cut(s)	251, 559, 946
Hpy166II	GTNNAC	2 cut(s)	424, 1081
Hpy188I	TCNGA	3 cut(s)	324, 821, 906
Hpy188III	TCNNGA	4 cut(s)	80, 544, 749, 797
Hpy8I	GTNNAC	2 cut(s)	424, 1081
Hpy99I	CGWCG	1 cut(s)	1076
HpyAV	CCTTC	4 cut(s)	473, 520, 746, 1136
HpyCH4III	ACNGT	5 cut(s)	277, 305, 742, 790, 804
HpyCH4IV	ACGT	2 cut(s)	1074, 1249
HpyCH4V	TGCA	8 cut(s)	56, 380, 433, 651, 866, 946, 1112, 1227
HpyF3I	CTNAG	5 cut(s)	141, 413, 418, 453, 491
HpySE526I	ACGT	2 cut(s)	1074, 1249
Hsp92I	GRCGYC	1 cut(s)	1249
Hsp92II	CATG	8 cut(s)	202, 209, 374, 398, 474, 1141, 1150, 1187
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	5 cut(s)	324, 367, 520, 607, 886
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	3 cut(s)	68, 1054, 1141
LweI	GCATC	5 cut(s)	638, 739, 818, 875, 933
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	2 cut(s)	1074, 1249
MaeIII	GTNAC	2 cut(s)	583, 1240
MalI	GATC	5 cut(s)	326, 369, 522, 609, 888
MboI	GATC	5 cut(s)	324, 367, 520, 607, 886
MboII	GAAGA	9 cut(s)	311, 460, 489, 505, 586, 926, 971, 985, 1060
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	5 cut(s)	33, 375, 535, 547, 1205
MlyI	GAGTC	2 cut(s)	360, 445
MnlI	CCTC	5 cut(s)	174, 437, 654, 746, 859
MseI	TTAA	3 cut(s)	711, 792, 1254
MslI	CAYNNNNRTG	2 cut(s)	1121, 1123
MspCI	CTTAAG	1 cut(s)	1253
MspR9I	CCNGG	2 cut(s)	333, 571
MvaI	CCWGG	2 cut(s)	333, 571
NdeII	GATC	5 cut(s)	324, 367, 520, 607, 886
NlaIII	CATG	8 cut(s)	202, 209, 374, 398, 474, 1141, 1150, 1187
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	1240
OliI	CACNNNNGTG	1 cut(s)	1121
PciSI	GCTCTTC	1 cut(s)	324
PfeI	GAWTC	6 cut(s)	94, 339, 506, 705, 1062, 1193
PkrI	GCNGC	3 cut(s)	58, 1044, 1131
PleI	GAGTC	2 cut(s)	359, 445
PpsI	GAGTC	2 cut(s)	359, 445
PshAI	GACNNNNGTC	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	331, 569
PspFI	CCCAGC	1 cut(s)	813
PspGI	CCWGG	2 cut(s)	331, 569
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	202, 764
PsrI	GAACNNNNNNTAC	2 cut(s)	1013, 1045
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
RseI	CAYNNNNRTG	2 cut(s)	1121, 1123
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	711, 792, 1254
SatI	GCNGC	3 cut(s)	57, 1043, 1130
Sau3AI	GATC	5 cut(s)	324, 367, 520, 607, 886
Sau96I	GGNCC	2 cut(s)	202, 764
SchI	GAGTC	2 cut(s)	360, 445
ScrFI	CCNGG	2 cut(s)	333, 571
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	5 cut(s)	638, 739, 818, 875, 933
SfcI	CTRYAG	1 cut(s)	1057
SinI	GGWCC	2 cut(s)	202, 764
SmiMI	CAYNNNNRTG	2 cut(s)	1121, 1123
SmlI	CTYRAG	2 cut(s)	554, 1253
SmoI	CTYRAG	2 cut(s)	554, 1253
Sse9I	AATT	5 cut(s)	33, 375, 535, 547, 1205
SsiI	CCGC	2 cut(s)	209, 532
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	331, 569
TaaI	ACNGT	5 cut(s)	277, 305, 742, 790, 804
TaiI	ACGT	2 cut(s)	1077, 1252
TaqI	TCGA	5 cut(s)	79, 342, 646, 720, 1071
TasI	AATT	5 cut(s)	33, 375, 535, 547, 1205
TatI	WGTACW	1 cut(s)	597
TfiI	GAWTC	6 cut(s)	94, 339, 506, 705, 1062, 1193
Tru1I	TTAA	3 cut(s)	711, 792, 1254
Tru9I	TTAA	3 cut(s)	711, 792, 1254
TscAI	CASTG	3 cut(s)	280, 809, 896
TseFI	GTSAC	1 cut(s)	1240
TseI	GCWGC	3 cut(s)	56, 1042, 1129
Tsp45I	GTSAC	1 cut(s)	1240
TspDTI	ATGAA	8 cut(s)	52, 187, 231, 697, 863, 887, 1126, 1200
TspGWI	ACGGA	2 cut(s)	150, 859
TspRI	CASTG	3 cut(s)	280, 809, 896
Vha464I	CTTAAG	1 cut(s)	1253
VpaK11BI	GGWCC	2 cut(s)	202, 764
XapI	RAATTY	1 cut(s)	33
XspI	CTAG	1 cut(s)	38
ZraI	GACGTC	1 cut(s)	1250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.