Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009537

Physical Location & Seq

Genomic Coordinates Reverse (-)

20085834 .. 20094029

Gene Structure 8196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26240.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGTAGCAGCAGGAAATGGTCTGTTCTACCCCATTGTCGGATTCGCTTCATGTTTGGCTCTCATCTACTTGTCCTTTGGGGACTTGAGGAGCAATTTTCGTGAAGAAGATCATCAGTTGGCTTTTGTGAAAAGGAATGGGACTCAGTTCACCTCGGATGGTAAACCATTTTACATCAATGGATGGAATTCTTATTGGCTAATGTATCACGGTGTGGATGAGTATACCAGACCTAGAGTCCGAGAAATCCTGCAAGCCGGTGCCAAAATGGGTCTTACACTCTGTCGAACTTGGGCTTTTAATGATGGTGACTACAATGCTCTTCAGGTTTCCCCTGGTCAGTTCGATGAGCGAGTTTTCAAGGCTTTGGATCATGTTATTGTAGAAGCAAGACAACAGGGCATCAGATTGCTACTTTGCTTAGTTAATAACTTGGAAAATTATGGTGGGAAGTCTCAATATGTAAGGTGGGCCTGGCAAGAAGGTGTTGGTTTGAGTGCATCTAATGATTCATTTTTCTTTGACCCATCCATTCGCAATTATTTCAAGAGTTACATCAAGACTATCCTAACGAGGAAGAATACTCTGAATGGGATTGAATATAGAGATGATCCCACCATTTTTGGGTGGGAGTTAATAAATGAACCCCGTTGCAGCACTGATGCCTCAGGCGATACTCTCCAAGATTGGATAGAAGAAATGTCAGCATTTGTGAAATTAATTGATAAGAAACATCTACTGACAGTGGGCCTGGAAGGATTTTATGGTCCTAAGGACCCCAAAGCCTTAACTGTGAATCCTGAACGGTGGGCTTCCCGACTTGGATCAGATTTCATTCGCAACTCCAAGATCCCCAGCATTGACTTTGCTTCTGTTCATATCTACCCTGACCATTGGTTTCATGATCTAGAAGTGGAGGACCACCTGAAATTTGTAACCAAGTGGATGCTTTCTCACATTGAAGATGGTGAGAAAGAACTTAACAAACCAGTCATGTTCACGGAATTTGGCTTGGCAGACCAGCTTGATAGATTTTACAAAACTATTTATGATATCATTTACAAATCTGCAAAGAAACACCAGGCTGGGGCAGGTGCTTTAGCGTGGCAGTTTATTGTTGGAGGAATGGAAAAGTTCAATGATGAATTTGGGATTATTCCATGGGAGAGGCCAGCTACCTATAAGCTGATAATAGAACATACATGTAGGTTGGCTAGAATCCAGGGTCCAGTTTTAGAACAGCGAAATTTGAAAGAGCTGTGCTTACAAAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

426

Amino Acids

49.05

Weight (kDa)

6.2

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	54 - 383	3.9e-48	GH family 5 beta-mannosidase-like
Cellulase	PF00150	95 - 372	1.3e-10	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20680 AT4G28320
fragaria_vesca	FvH4_6g26240 FvH4_6g26240 FvH4_6g26240
malus_domestica	MD09G1246900.v1.1 MD17G1239800.v1.1
prunus_persica	Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1
pyrus_communis	pycom09g16420 pycom17g24310
rosa_chinensis	RchiOBHm_Chr2g0126631
rosa_laevigata	RLG00000018915
rosa_multiflora	Rmu_sc0002369.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117060
rosa_rugosa	Rorug02G0264100
rosa_samantha	Rh2AG321100 Rh2BG329400 Rh2CG309100
rosa_wichuraiana	Rw2G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1082
Acc36I	ACCTGC	1 cut(s)	1082
AccB1I	GGYRCC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	224
AclWI	GGATC	4 cut(s)	378, 605, 832, 844
AcsI	RAATTY	5 cut(s)	187, 929, 1004, 1145, 1246
AcuI	CTGAAG	1 cut(s)	308
AdeI	CACNNNGTG	1 cut(s)	214
AfiI	CCNNNNNNNGG	3 cut(s)	38, 624, 1087
AflIII	ACRYGT	1 cut(s)	1202
AgsI	TTSAA	6 cut(s)	361, 547, 599, 962, 1138, 1252
AhdI	GACNNNNNGTC	1 cut(s)	236
AjnI	CCWGG	5 cut(s)	334, 473, 750, 1080, 1221
AluBI	AGCT	4 cut(s)	1024, 1175, 1186, 1258
AluI	AGCT	4 cut(s)	1024, 1175, 1186, 1258
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	4 cut(s)	378, 605, 832, 844
AoxI	GGCC	3 cut(s)	471, 748, 1169
ApeKI	GCWGC	2 cut(s)	8, 654
ApoI	RAATTY	5 cut(s)	187, 929, 1004, 1145, 1246
AseI	ATTAAT	1 cut(s)	719
AspS9I	GGNCC	6 cut(s)	471, 748, 767, 775, 919, 1226
AsuHPI	GGTGA	3 cut(s)	142, 320, 980
AvaII	GGWCC	4 cut(s)	767, 775, 919, 1226
AxyI	CCTNAGG	2 cut(s)	667, 771
BanI	GGYRCC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	20, 666
BccI	CCATC	5 cut(s)	152, 177, 299, 535, 959
BciT130I	CCWGG	5 cut(s)	336, 475, 752, 1082, 1223
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	3 cut(s)	234, 908, 1215
BfuAI	ACCTGC	1 cut(s)	1082
BisI	GCNGC	2 cut(s)	9, 655
BlsI	GCNGC	2 cut(s)	10, 656
Bme1390I	CCNGG	5 cut(s)	336, 475, 752, 1082, 1223
Bme18I	GGWCC	4 cut(s)	767, 775, 919, 1226
BmeRI	GACNNNNNGTC	1 cut(s)	236
BmgT120I	GGNCC	6 cut(s)	471, 748, 767, 775, 919, 1226
BmiI	GGNNCC	3 cut(s)	262, 777, 1227
BmrFI	CCNGG	5 cut(s)	336, 475, 752, 1082, 1223
BmsI	GCATC	4 cut(s)	411, 509, 652, 936
BpuEI	CTTGAG	1 cut(s)	106
BsaJI	CCNNGG	4 cut(s)	153, 334, 1160, 1222
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 624, 1087
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	989, 1229
Bse21I	CCTNAGG	2 cut(s)	667, 771
BseBI	CCWGG	5 cut(s)	336, 475, 752, 1082, 1223
BseDI	CCNNGG	4 cut(s)	153, 334, 1160, 1222
BseGI	GGATG	5 cut(s)	163, 188, 223, 527, 951
BseLI	CCNNNNNNNGG	3 cut(s)	38, 624, 1087
BseMII	CTCAG	2 cut(s)	158, 681
BseNI	ACTGG	2 cut(s)	989, 1229
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	20, 666
BseYI	CCCAGC	2 cut(s)	854, 1085
BshFI	GGCC	3 cut(s)	473, 750, 1171
BshNI	GGYRCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	2 cut(s)	95, 154
BslI	CCNNNNNNNGG	3 cut(s)	38, 624, 1087
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	2 cut(s)	95, 154
BsnI	GGCC	3 cut(s)	473, 750, 1171
Bsp143I	GATC	6 cut(s)	109, 370, 610, 824, 849, 904
Bsp19I	CCATGG	1 cut(s)	1160
BspANI	GGCC	3 cut(s)	473, 750, 1171
BspCNI	CTCAG	2 cut(s)	157, 680
BspHI	TCATGA	1 cut(s)	901
BspLI	GGNNCC	3 cut(s)	262, 777, 1227
BspMI	ACCTGC	1 cut(s)	1082
BspPI	GGATC	4 cut(s)	378, 605, 832, 844
BspQI	GCTCTTC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	989, 1229
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	4 cut(s)	153, 334, 1160, 1222
BssMI	GATC	6 cut(s)	109, 370, 610, 824, 849, 904
BssNAI	GTATAC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	1160
Bst1107I	GTATAC	1 cut(s)	225
Bst2UI	CCWGG	5 cut(s)	336, 475, 752, 1082, 1223
Bst4CI	ACNGT	4 cut(s)	212, 745, 793, 807
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	255, 1173
BstDEI	CTNAG	4 cut(s)	144, 421, 667, 771
BstDSI	CCRYGG	1 cut(s)	1160
BstF5I	GGATG	5 cut(s)	163, 188, 223, 527, 951
BstKTI	GATC	6 cut(s)	112, 373, 613, 827, 852, 907
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	6 cut(s)	109, 370, 610, 824, 849, 904
BstNI	CCWGG	5 cut(s)	336, 475, 752, 1082, 1223
BstNSI	RCATGY	1 cut(s)	1206
BstSCI	CCNGG	5 cut(s)	334, 473, 750, 1080, 1221
BstV1I	GCAGC	2 cut(s)	20, 666
BstX2I	RGATCY	1 cut(s)	849
BstYI	RGATCY	1 cut(s)	849
BstZ17I	GTATAC	1 cut(s)	225
Bsu36I	CCTNAGG	2 cut(s)	667, 771
BsuRI	GGCC	3 cut(s)	473, 750, 1171
BtgI	CCRYGG	1 cut(s)	1160
BtsCI	GGATG	5 cut(s)	163, 188, 223, 527, 951
BtsIMutI	CAGTG	3 cut(s)	657, 750, 1273
BveI	ACCTGC	1 cut(s)	1082
Cac8I	GCNNGC	2 cut(s)	255, 1173
CciI	TCATGA	1 cut(s)	901
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	6 cut(s)	471, 748, 767, 775, 919, 1226
CspCI	CAANNNNNGTGG	2 cut(s)	604, 639
CviAII	CATG	6 cut(s)	51, 374, 902, 994, 1161, 1203
DdeI	CTNAG	4 cut(s)	144, 421, 667, 771
DpnI	GATC	6 cut(s)	111, 372, 612, 826, 851, 906
DpnII	GATC	6 cut(s)	109, 370, 610, 824, 849, 904
DraIII	CACNNNGTG	1 cut(s)	214
DriI	GACNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	327
Eam1105I	GACNNNNNGTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	1160
Eco32I	GATATC	1 cut(s)	1054
Eco47I	GGWCC	4 cut(s)	767, 775, 919, 1226
Eco57I	CTGAAG	1 cut(s)	308
Eco81I	CCTNAGG	2 cut(s)	667, 771
EcoO109I	RGGNCCY	1 cut(s)	775
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	5 cut(s)	334, 473, 750, 1080, 1221
EcoRV	GATATC	1 cut(s)	1054
EcoT14I	CCWWGG	1 cut(s)	1160
ErhI	CCWWGG	1 cut(s)	1160
FaeI	CATG	6 cut(s)	54, 377, 905, 997, 1164, 1206
FaqI	GGGAC	2 cut(s)	95, 154
FatI	CATG	6 cut(s)	50, 373, 901, 993, 1160, 1202
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	9, 655
FokI	GGATG	5 cut(s)	170, 195, 230, 514, 958
Fsp4HI	GCNGC	2 cut(s)	9, 655
FspBI	CTAG	3 cut(s)	234, 908, 1215
GluI	GCNGC	2 cut(s)	9, 655
GsaI	CCCAGC	2 cut(s)	858, 1089
HaeIII	GGCC	3 cut(s)	473, 750, 1171
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	6 cut(s)	54, 377, 905, 997, 1164, 1206
HinfI	GANTC	6 cut(s)	42, 142, 237, 509, 796, 1218
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	3 cut(s)	142, 320, 980
Hpy166II	GTNNAC	4 cut(s)	150, 164, 225, 999
Hpy188I	TCNGA	6 cut(s)	41, 157, 242, 407, 588, 829
Hpy188III	TCNNGA	7 cut(s)	101, 547, 559, 800, 816, 902, 908
Hpy8I	GTNNAC	4 cut(s)	150, 164, 225, 999
HpyAV	CCTTC	2 cut(s)	476, 749
HpyCH4III	ACNGT	4 cut(s)	212, 745, 793, 807
HpyCH4V	TGCA	4 cut(s)	253, 500, 654, 1070
HpyF3I	CTNAG	4 cut(s)	144, 421, 667, 771
Hsp92II	CATG	6 cut(s)	54, 377, 905, 997, 1164, 1206
Kzo9I	GATC	6 cut(s)	109, 370, 610, 824, 849, 904
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	20, 666
LweI	GCATC	4 cut(s)	411, 509, 652, 936
MaeI	CTAG	3 cut(s)	234, 908, 1215
MaeIII	GTNAC	3 cut(s)	308, 551, 934
MalI	GATC	6 cut(s)	111, 372, 612, 826, 851, 906
MboI	GATC	6 cut(s)	109, 370, 610, 824, 849, 904
MboII	GAAGA	6 cut(s)	116, 119, 314, 589, 707, 974
MflI	RGATCY	1 cut(s)	849
MlyI	GAGTC	2 cut(s)	136, 246
MmeI	TCCRAC	2 cut(s)	19, 1099
MnlI	CCTC	7 cut(s)	81, 163, 567, 676, 910, 1115, 1161
MseI	TTAA	6 cut(s)	300, 426, 635, 719, 788, 981
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	5 cut(s)	336, 475, 752, 1082, 1223
MvaI	CCWGG	5 cut(s)	336, 475, 752, 1082, 1223
NcoI	CCATGG	1 cut(s)	1160
NdeII	GATC	6 cut(s)	109, 370, 610, 824, 849, 904
NlaIII	CATG	6 cut(s)	54, 377, 905, 997, 1164, 1206
NlaIV	GGNNCC	3 cut(s)	262, 777, 1227
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	1206
PagI	TCATGA	1 cut(s)	901
PaqCI	CACCTGC	1 cut(s)	1082
PciI	ACATGT	1 cut(s)	1202
PciSI	GCTCTTC	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	42, 509, 796, 1218
PkrI	GCNGC	2 cut(s)	10, 656
PleI	GAGTC	2 cut(s)	136, 245
PpsI	GAGTC	2 cut(s)	136, 245
PpuMI	RGGWCCY	1 cut(s)	775
PscI	ACATGT	1 cut(s)	1202
PshBI	ATTAAT	1 cut(s)	719
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	5 cut(s)	334, 473, 750, 1080, 1221
PspFI	CCCAGC	2 cut(s)	854, 1085
PspGI	CCWGG	5 cut(s)	334, 473, 750, 1080, 1221
PspN4I	GGNNCC	3 cut(s)	262, 777, 1227
PspPI	GGNCC	6 cut(s)	471, 748, 767, 775, 919, 1226
PspPPI	RGGWCCY	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	849
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	6 cut(s)	300, 426, 635, 719, 788, 981
SatI	GCNGC	2 cut(s)	9, 655
Sau3AI	GATC	6 cut(s)	109, 370, 610, 824, 849, 904
Sau96I	GGNCC	6 cut(s)	471, 748, 767, 775, 919, 1226
SchI	GAGTC	2 cut(s)	136, 246
ScrFI	CCNGG	5 cut(s)	336, 475, 752, 1082, 1223
SfaNI	GCATC	4 cut(s)	411, 509, 652, 936
SinI	GGWCC	4 cut(s)	767, 775, 919, 1226
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SspMI	CTAG	3 cut(s)	234, 908, 1215
StyD4I	CCNGG	5 cut(s)	334, 473, 750, 1080, 1221
StyI	CCWWGG	1 cut(s)	1160
TaaI	ACNGT	4 cut(s)	212, 745, 793, 807
TaqI	TCGA	2 cut(s)	286, 345
TfiI	GAWTC	4 cut(s)	42, 509, 796, 1218
Tru1I	TTAA	6 cut(s)	300, 426, 635, 719, 788, 981
Tru9I	TTAA	6 cut(s)	300, 426, 635, 719, 788, 981
TscAI	CASTG	2 cut(s)	664, 750
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	2 cut(s)	8, 654
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	7 cut(s)	39, 501, 657, 823, 866, 890, 1158
TspGWI	ACGGA	1 cut(s)	1016
TspRI	CASTG	2 cut(s)	664, 750
VpaK11BI	GGWCC	4 cut(s)	767, 775, 919, 1226
VspI	ATTAAT	1 cut(s)	719
XapI	RAATTY	5 cut(s)	187, 929, 1004, 1145, 1246
XbaI	TCTAGA	1 cut(s)	907
XceI	RCATGY	1 cut(s)	1206
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	3 cut(s)	234, 908, 1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.