Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002369.1

Orthogroup ID

OG0009537

Physical Location & Seq

Genomic Coordinates Forward (+)

72261 .. 78496

Gene Structure 6236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002369.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atggtagtagcagggaatggtcttttctaccccattattggattcgcttcatgtttggctttcctctacatgtcctttcactccttcagtgacttgaggagcgattttcgtgaagaagaacatcagttggcttttgtgaagaggaatgggactcagttcaccttggagggtaaaccattttacattaatggatggaattcttactggttaatgtatcatgctgtggatgagtatagcagacccagagtccgagaaatgctgcaagccggtgcaaaaatgggtcttactctctgtcgaacttgggcctttaatgatggtgagtacaatgctctccagctttcccctggtcagttcgatgagcgagtttttaaggctttggatcatgttattgtagaagcaagacaacagggcgtcaggttgcttctttgcttagttaataacttgcaaaattatggtgggaagtctcagtatgtaaggtgggcctggcaagaaggtgttggtttgagctcatccaatgattcatttttctttgacccatccattcgcaattatttcaagagttacataaagactatcctaaccaggaagaatacactcaatggaattgaatatagagatgaccccaccatttttgcgtgggagttaataaatgaaccccgttgcagcactgatgcctcaggcgatactctccaagattggatagaagaaatgtcagaatttgtgaaagtaattgacaagaaacatctactgactgtgggcctggaaggattttatggtcctaagaaccccaaagctttgactgtgaatcctgaacagtgggcatcccgacttggatcagatttcattcgcaactccaagatccccagcattgattttgcttctgttcatatgtaccctgaccactggtttcatgatctagaagtggaggaccacctgaagtttgtcaccaagtggatgctttctcacattgaagatggtgagaaagaacttaacaaaccagtcatgttcaccgaatttggcttggcagaccagcttgatagattttacaaaactatttttgatgtcatttacaaatctgcaaagaaacaccaggctggggcaggtgctttagcgtggcagtttttggtagcaggaatggacaagtataatgatgaatttgggattgttccatgggaaaggccatctacctataagctgataatagaacaaacatgtaggttggctaaaatccagggtccaattttagaacagcgaaatttgaaagagttgtgcctgcaaaaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

428

Amino Acids

49.65

Weight (kDa)

6.04

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20680 AT4G28320
fragaria_vesca	FvH4_6g26240 FvH4_6g26240 FvH4_6g26240
malus_domestica	MD09G1246900.v1.1 MD17G1239800.v1.1
prunus_persica	Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1
pyrus_communis	pycom09g16420 pycom17g24310
rosa_chinensis	RchiOBHm_Chr2g0126631
rosa_laevigata	RLG00000018915
rosa_multiflora	Rmu_sc0002369.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117060
rosa_rugosa	Rorug02G0264100
rosa_samantha	Rh2AG321100 Rh2BG329400 Rh2CG309100
rosa_wichuraiana	Rw2G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1091
Acc36I	ACCTGC	1 cut(s)	1091
AclWI	GGATC	3 cut(s)	387, 841, 853
AcsI	RAATTY	5 cut(s)	196, 716, 1013, 1154, 1255
AcuI	CTGAAG	2 cut(s)	70, 956
AcyI	GRCGYC	1 cut(s)	411
AdeI	CACNNNGTG	1 cut(s)	951
AfaI	GTAC	2 cut(s)	323, 893
AfiI	CCNNNNNNNGG	2 cut(s)	38, 1096
AflIII	ACRYGT	2 cut(s)	69, 1211
AgsI	TTSAA	4 cut(s)	556, 608, 971, 1261
AhdI	GACNNNNNGTC	1 cut(s)	245
AjnI	CCWGG	6 cut(s)	343, 482, 581, 759, 1089, 1230
AluBI	AGCT	5 cut(s)	337, 507, 794, 1033, 1195
AluI	AGCT	5 cut(s)	337, 507, 794, 1033, 1195
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	3 cut(s)	387, 841, 853
AoxI	GGCC	4 cut(s)	303, 480, 757, 1178
ApeKI	GCWGC	2 cut(s)	259, 663
ApoI	RAATTY	5 cut(s)	196, 716, 1013, 1154, 1255
AseI	ATTAAT	1 cut(s)	186
AspS9I	GGNCC	6 cut(s)	303, 480, 757, 776, 928, 1235
AsuHPI	GGTGA	5 cut(s)	151, 329, 937, 989, 1000
AvaII	GGWCC	3 cut(s)	776, 928, 1235
AxyI	CCTNAGG	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	246, 675
BccI	CCATC	5 cut(s)	186, 308, 544, 968, 1189
BciT130I	CCWGG	6 cut(s)	345, 484, 583, 761, 1091, 1232
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	1 cut(s)	917
BfuAI	ACCTGC	1 cut(s)	1091
BisI	GCNGC	2 cut(s)	260, 664
BlsI	GCNGC	2 cut(s)	261, 665
Bme1390I	CCNGG	6 cut(s)	345, 484, 583, 761, 1091, 1232
Bme18I	GGWCC	3 cut(s)	776, 928, 1235
BmeRI	GACNNNNNGTC	1 cut(s)	245
BmgT120I	GGNCC	6 cut(s)	303, 480, 757, 776, 928, 1235
BmiI	GGNNCC	1 cut(s)	1236
BmrFI	CCNGG	6 cut(s)	345, 484, 583, 761, 1091, 1232
BmsI	GCATC	3 cut(s)	661, 830, 945
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	4 cut(s)	162, 343, 1169, 1231
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 1096
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	3 cut(s)	209, 908, 998
Bse21I	CCTNAGG	1 cut(s)	676
BseBI	CCWGG	6 cut(s)	345, 484, 583, 761, 1091, 1232
BseDI	CCNNGG	4 cut(s)	162, 343, 1169, 1231
BseGI	GGATG	6 cut(s)	197, 232, 509, 536, 821, 960
BseLI	CCNNNNNNNGG	2 cut(s)	38, 1096
BseMII	CTCAG	3 cut(s)	167, 479, 690
BseNI	ACTGG	3 cut(s)	209, 908, 998
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	246, 675
BseYI	CCCAGC	2 cut(s)	863, 1094
BshFI	GGCC	4 cut(s)	305, 482, 759, 1180
BsiHKAI	GWGCWC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	38, 1096
BsmAI	GTCTC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	305, 482, 759, 1180
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	4 cut(s)	379, 833, 858, 913
Bsp19I	CCATGG	1 cut(s)	1169
BspANI	GGCC	4 cut(s)	305, 482, 759, 1180
BspCNI	CTCAG	3 cut(s)	166, 478, 689
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	1 cut(s)	1236
BspMI	ACCTGC	1 cut(s)	1091
BspPI	GGATC	3 cut(s)	387, 841, 853
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	3 cut(s)	209, 908, 998
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	4 cut(s)	162, 343, 1169, 1231
BssMI	GATC	4 cut(s)	379, 833, 858, 913
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	162, 1169
Bst2UI	CCWGG	6 cut(s)	345, 484, 583, 761, 1091, 1232
Bst4CI	ACNGT	4 cut(s)	754, 802, 816, 1284
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	264, 1274
BstDEI	CTNAG	5 cut(s)	153, 430, 465, 676, 780
BstDSI	CCRYGG	1 cut(s)	1169
BstF5I	GGATG	6 cut(s)	197, 232, 509, 536, 821, 960
BstKTI	GATC	4 cut(s)	382, 836, 861, 916
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	4 cut(s)	379, 833, 858, 913
BstNI	CCWGG	6 cut(s)	345, 484, 583, 761, 1091, 1232
BstNSI	RCATGY	2 cut(s)	73, 1215
BstSCI	CCNGG	6 cut(s)	343, 482, 581, 759, 1089, 1230
BstV1I	GCAGC	2 cut(s)	246, 675
BstX2I	RGATCY	1 cut(s)	858
BstYI	RGATCY	1 cut(s)	858
Bsu36I	CCTNAGG	1 cut(s)	676
BsuRI	GGCC	4 cut(s)	305, 482, 759, 1180
BtgI	CCRYGG	1 cut(s)	1169
BtsCI	GGATG	6 cut(s)	197, 232, 509, 536, 821, 960
BtsIMutI	CAGTG	4 cut(s)	94, 666, 821, 901
BveI	ACCTGC	1 cut(s)	1091
Cac8I	GCNNGC	2 cut(s)	264, 1274
CciI	TCATGA	1 cut(s)	910
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	6 cut(s)	303, 480, 757, 776, 928, 1235
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	322, 892
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	8 cut(s)	51, 70, 218, 383, 911, 1003, 1170, 1212
CviQI	GTAC	2 cut(s)	322, 892
DdeI	CTNAG	5 cut(s)	153, 430, 465, 676, 780
DpnI	GATC	4 cut(s)	381, 835, 860, 915
DpnII	GATC	4 cut(s)	379, 833, 858, 913
DraIII	CACNNNGTG	1 cut(s)	951
DriI	GACNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	134
Eam1105I	GACNNNNNGTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	507
Eco130I	CCWWGG	2 cut(s)	162, 1169
Eco24I	GRGCYC	1 cut(s)	509
Eco47I	GGWCC	3 cut(s)	776, 928, 1235
Eco53kI	GAGCTC	1 cut(s)	507
Eco57I	CTGAAG	2 cut(s)	70, 956
Eco81I	CCTNAGG	1 cut(s)	676
EcoICRI	GAGCTC	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	6 cut(s)	343, 482, 581, 759, 1089, 1230
EcoT14I	CCWWGG	2 cut(s)	162, 1169
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	2 cut(s)	162, 1169
FaeI	CATG	8 cut(s)	54, 73, 221, 386, 914, 1006, 1173, 1215
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	8 cut(s)	50, 69, 217, 382, 910, 1002, 1169, 1211
FauNDI	CATATG	1 cut(s)	888
Fnu4HI	GCNGC	2 cut(s)	260, 664
FokI	GGATG	6 cut(s)	204, 239, 496, 523, 808, 967
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	2 cut(s)	260, 664
FspBI	CTAG	1 cut(s)	917
GluI	GCNGC	2 cut(s)	260, 664
GsaI	CCCAGC	2 cut(s)	867, 1098
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	4 cut(s)	305, 482, 759, 1180
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	8 cut(s)	54, 73, 221, 386, 914, 1006, 1173, 1215
HindIII	AAGCTT	1 cut(s)	792
HinfI	GANTC	5 cut(s)	42, 151, 246, 518, 805
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	5 cut(s)	151, 329, 937, 989, 1000
Hpy166II	GTNNAC	3 cut(s)	159, 173, 1008
Hpy188I	TCNGA	3 cut(s)	251, 715, 838
Hpy188III	TCNNGA	6 cut(s)	110, 556, 809, 825, 911, 917
Hpy8I	GTNNAC	3 cut(s)	159, 173, 1008
HpyAV	CCTTC	3 cut(s)	94, 485, 758
HpyCH4III	ACNGT	4 cut(s)	754, 802, 816, 1284
HpyCH4V	TGCA	6 cut(s)	262, 272, 445, 663, 1079, 1276
HpyF3I	CTNAG	5 cut(s)	153, 430, 465, 676, 780
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	8 cut(s)	54, 73, 221, 386, 914, 1006, 1173, 1215
Kzo9I	GATC	4 cut(s)	379, 833, 858, 913
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	2 cut(s)	246, 675
LweI	GCATC	3 cut(s)	661, 830, 945
MaeI	CTAG	1 cut(s)	917
MaeIII	GTNAC	3 cut(s)	89, 560, 943
MalI	GATC	4 cut(s)	381, 835, 860, 915
MboI	GATC	4 cut(s)	379, 833, 858, 913
MboII	GAAGA	6 cut(s)	125, 128, 151, 598, 716, 983
MflI	RGATCY	1 cut(s)	858
MhlI	GDGCHC	1 cut(s)	509
MlyI	GAGTC	2 cut(s)	145, 255
MnlI	CCTC	6 cut(s)	74, 90, 135, 160, 685, 919
MseI	TTAA	7 cut(s)	186, 209, 309, 369, 435, 644, 990
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	6 cut(s)	345, 484, 583, 761, 1091, 1232
MvaI	CCWGG	6 cut(s)	345, 484, 583, 761, 1091, 1232
NcoI	CCATGG	1 cut(s)	1169
NdeI	CATATG	1 cut(s)	888
NdeII	GATC	4 cut(s)	379, 833, 858, 913
NlaIII	CATG	8 cut(s)	54, 73, 221, 386, 914, 1006, 1173, 1215
NlaIV	GGNNCC	1 cut(s)	1236
NmuCI	GTSAC	2 cut(s)	89, 943
NspI	RCATGY	2 cut(s)	73, 1215
PagI	TCATGA	1 cut(s)	910
PaqCI	CACCTGC	1 cut(s)	1091
PciI	ACATGT	2 cut(s)	69, 1211
PfeI	GAWTC	3 cut(s)	42, 518, 805
PkrI	GCNGC	2 cut(s)	261, 665
PleI	GAGTC	2 cut(s)	145, 254
PpsI	GAGTC	2 cut(s)	145, 254
PscI	ACATGT	2 cut(s)	69, 1211
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	509
Psp6I	CCWGG	6 cut(s)	343, 482, 581, 759, 1089, 1230
PspFI	CCCAGC	2 cut(s)	863, 1094
PspGI	CCWGG	6 cut(s)	343, 482, 581, 759, 1089, 1230
PspN4I	GGNNCC	1 cut(s)	1236
PspPI	GGNCC	6 cut(s)	303, 480, 757, 776, 928, 1235
PsuI	RGATCY	1 cut(s)	858
RsaI	GTAC	2 cut(s)	323, 893
RsaNI	GTAC	2 cut(s)	322, 892
SacI	GAGCTC	1 cut(s)	509
SaqAI	TTAA	7 cut(s)	186, 209, 309, 369, 435, 644, 990
SatI	GCNGC	2 cut(s)	260, 664
Sau3AI	GATC	4 cut(s)	379, 833, 858, 913
Sau96I	GGNCC	6 cut(s)	303, 480, 757, 776, 928, 1235
SchI	GAGTC	2 cut(s)	145, 255
ScrFI	CCNGG	6 cut(s)	345, 484, 583, 761, 1091, 1232
SduI	GDGCHC	1 cut(s)	509
SfaNI	GCATC	3 cut(s)	661, 830, 945
SinI	GGWCC	3 cut(s)	776, 928, 1235
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SspMI	CTAG	1 cut(s)	917
SstI	GAGCTC	1 cut(s)	509
StyD4I	CCNGG	6 cut(s)	343, 482, 581, 759, 1089, 1230
StyI	CCWWGG	2 cut(s)	162, 1169
TaaI	ACNGT	4 cut(s)	754, 802, 816, 1284
TaqI	TCGA	2 cut(s)	295, 354
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	42, 518, 805
Tru1I	TTAA	7 cut(s)	186, 209, 309, 369, 435, 644, 990
Tru9I	TTAA	7 cut(s)	186, 209, 309, 369, 435, 644, 990
TscAI	CASTG	4 cut(s)	94, 673, 821, 908
TseFI	GTSAC	2 cut(s)	89, 943
TseI	GCWGC	2 cut(s)	259, 663
Tsp45I	GTSAC	2 cut(s)	89, 943
TspDTI	ATGAA	7 cut(s)	39, 510, 666, 832, 875, 899, 1167
TspRI	CASTG	4 cut(s)	94, 673, 821, 908
VpaK11BI	GGWCC	3 cut(s)	776, 928, 1235
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	5 cut(s)	196, 716, 1013, 1154, 1255
XbaI	TCTAGA	1 cut(s)	916
XceI	RCATGY	2 cut(s)	73, 1215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	1 cut(s)	917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.