Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009537

Physical Location & Seq

Genomic Coordinates Forward (+)

16709863 .. 16714822

Gene Structure 4960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGATCTTGAGGTTCTCTGCAAAGAAGAAGAAAATGGTAGTGGCAGGAAATGGTCTGTTCTACCCAATTCTCGGATTCGTGTCCTGTGTGGCCTTCATCTACATGTCTTTCGGTAACTTGGGTTCTAATGTTGGCGACGAAAAGAAGTTGAGTTTTGTGGGGAGGAATGGGACTCAGTTCATGTTGGATGGCAAGGCATTTTACATTAATGGGTGGAATTCTTACTGGTTGATCGATCAAAGTGTGGATGAGTATAGAAAGCCGAGGGTCCGGAAAATTCTGCAAGCCGGTGCGAAAATGGGCCTTACCGTCTGCCGGACTTGGGCGTTTAACGACGGCGAGTACAATGCCCTCCAGATTTCCCCTGGTCACTTCAATGAGGAAGTGTTCAAGGCTTTGGATCATGTCATTGTAGAAGCTAGACAACAGGGCATCAGGCTGCGACTTTGCTTAGTTAATAACTTGCAAGCATATGGCGGGAAGACTCAGTATGTAAAGTGGGCTTGGGAAGAAGGTGTTGGTTTGAGCGCTTCCAATGATTCCTTTTTCTTTGATCCATCTATTCGCAATTATTTCAAGAACTACGTCAAGACTATCCTAACAAGGAAGAATACTCTCAATGGAATTGAGTATAGAAATGATCCTACCATTTTCGCGTGGGAATTAATAAATGAACCTCGTTGCATAACTGATGCTTCAGGCGACACTCTCCAAGATTGGATTGAAGAAATGTCAGCTTTTGTGAAAGCAATTGACAAGAACCACCTGCTGACTGTGGGCCTCGAAGGATTTTATGGTCCTAAAAGCCCTAAAAGGTTGACTGCAAATCCAGAAATGTGGGCATCCAGACTTGGATCTGATTTTATTCGCAACTCCAAGATCCCCAATATTGATTTCGCCTCTGTTCATATCTACCCTGACCATTGGTTCCATGATGAAGAATTTCACGAGAACCTCAAATTTGTCTCCAAGTGGATGCATTCTCACATTGAAGACGGGGACAATGAACTGAATAAACCCATCATGTTCACCGAATATGGATTGTCAAACCAGAACAAGGACTTTGAACCATCTCAGCGTGAGAGGTTTTACAAAACTATTCTAGACGTGATATACAAATCTGCCAAGAAAAACCGGTCTGGAGCAGGTGCTTTAGCCTGGCAGTTTCTCGTTGAAGGAATGGACGAGTATAATGATGAATTTGGGATTGTTCCGTGGGAAAGACCGTCTGAGTATAAGATGATAGTAGAACAATCATGCAGGTTGGCTAGACTCAAGGGACCAACTCAACAACAGCGAAATTTCAAAGACTTGTGTTCGCAAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

444

Amino Acids

51.23

Weight (kDa)

8.51

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20680 AT4G28320
fragaria_vesca	FvH4_6g26240 FvH4_6g26240 FvH4_6g26240
malus_domestica	MD09G1246900.v1.1 MD17G1239800.v1.1
prunus_persica	Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1
pyrus_communis	pycom09g16420 pycom17g24310
rosa_chinensis	RchiOBHm_Chr2g0126631
rosa_laevigata	RLG00000018915
rosa_multiflora	Rmu_sc0002369.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117060
rosa_rugosa	Rorug02G0264100
rosa_samantha	Rh2AG321100 Rh2BG329400 Rh2CG309100
rosa_wichuraiana	Rw2G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	774, 1136
Acc36I	ACCTGC	3 cut(s)	774, 1136, 1251
AccII	CGCG	1 cut(s)	656
AccIII	TCCGGA	1 cut(s)	270
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	5 cut(s)	408, 548, 635, 862, 874
AcsI	RAATTY	6 cut(s)	217, 276, 941, 959, 1199, 1300
AcuI	CTGAAG	1 cut(s)	681
AfaI	GTAC	1 cut(s)	344
AfeI	AGCGCT	1 cut(s)	529
AfiI	CCNNNNNNNGG	4 cut(s)	71, 315, 322, 1057
AflIII	ACRYGT	1 cut(s)	102
AgeI	ACCGGT	1 cut(s)	1134
AgsI	TTSAA	8 cut(s)	376, 391, 577, 725, 992, 1067, 1175, 1306
AjiI	CACGTC	1 cut(s)	1108
AjnI	CCWGG	2 cut(s)	364, 1157
AjuI	GAANNNNNNNTTGG	4 cut(s)	501, 533, 878, 910
AluBI	AGCT	2 cut(s)	419, 737
AluI	AGCT	2 cut(s)	419, 737
Alw26I	GTCTC	1 cut(s)	970
AlwI	GGATC	5 cut(s)	408, 548, 635, 862, 874
Aor13HI	TCCGGA	1 cut(s)	270
Aor51HI	AGCGCT	1 cut(s)	529
AoxI	GGCC	3 cut(s)	90, 301, 778
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	6 cut(s)	217, 276, 941, 959, 1199, 1300
AseI	ATTAAT	2 cut(s)	207, 665
AsiGI	ACCGGT	1 cut(s)	1134
Asp700I	GAANNNNTTC	1 cut(s)	942
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	5 cut(s)	268, 301, 778, 797, 1280
AsuHPI	GGTGA	1 cut(s)	1021
AvaII	GGWCC	3 cut(s)	268, 797, 1280
BauI	CACGAG	1 cut(s)	947
BbsI	GAAGAC	2 cut(s)	488, 999
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	4 cut(s)	182, 565, 1028, 1078
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	2 cut(s)	366, 1159
BcoDI	GTCTC	1 cut(s)	970
BfaI	CTAG	3 cut(s)	420, 1103, 1269
BfoI	RGCGCY	1 cut(s)	531
BfuAI	ACCTGC	3 cut(s)	774, 1136, 1251
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
Bme1390I	CCNGG	2 cut(s)	366, 1159
Bme18I	GGWCC	3 cut(s)	268, 797, 1280
BmgBI	CACGTC	1 cut(s)	1108
BmgT120I	GGNCC	5 cut(s)	268, 301, 778, 797, 1280
BmiI	GGNNCC	3 cut(s)	269, 929, 1281
BmrFI	CCNGG	2 cut(s)	366, 1159
BmsI	GCATC	4 cut(s)	441, 682, 851, 966
BpiI	GAAGAC	2 cut(s)	488, 999
BpmI	CTGGAG	2 cut(s)	338, 1161
BpuEI	CTTGAG	2 cut(s)	28, 1259
Bsa29I	ATCGAT	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	263, 364, 1214
BsaWI	WCCGGW	2 cut(s)	270, 1134
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 315, 322, 1057
Bse118I	RCCGGY	2 cut(s)	287, 1134
Bse1I	ACTGG	1 cut(s)	230
BseAI	TCCGGA	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	366, 1159
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	263, 364, 1214
BseGI	GGATG	4 cut(s)	193, 253, 842, 981
BseLI	CCNNNNNNNGG	4 cut(s)	71, 315, 322, 1057
BseMII	CTCAG	4 cut(s)	188, 500, 1088, 1221
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	3 cut(s)	92, 303, 780
BshTI	ACCGGT	1 cut(s)	1134
BshVI	ATCGAT	1 cut(s)	234
BsiSI	CCGG	4 cut(s)	271, 288, 316, 1135
BslFI	GGGAC	3 cut(s)	184, 1013, 1293
BslI	CCNNNNNNNGG	4 cut(s)	71, 315, 322, 1057
BsmAI	GTCTC	1 cut(s)	970
BsmFI	GGGAC	3 cut(s)	184, 1013, 1293
BsmI	GAATGC	1 cut(s)	979
BsnI	GGCC	3 cut(s)	92, 303, 780
Bsp13I	TCCGGA	1 cut(s)	270
Bsp143I	GATC	8 cut(s)	3, 231, 235, 400, 553, 640, 854, 879
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	3 cut(s)	92, 303, 780
BspCNI	CTCAG	4 cut(s)	187, 499, 1087, 1222
BspDI	ATCGAT	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	656
BspLI	GGNNCC	3 cut(s)	269, 929, 1281
BspMI	ACCTGC	3 cut(s)	774, 1136, 1251
BspPI	GGATC	5 cut(s)	408, 548, 635, 862, 874
BsrFI	RCCGGY	2 cut(s)	287, 1134
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	2 cut(s)	287, 1134
BssECI	CCNNGG	3 cut(s)	263, 364, 1214
BssMI	GATC	8 cut(s)	3, 231, 235, 400, 553, 640, 854, 879
BssSI	CACGAG	1 cut(s)	947
Bst2BI	CACGAG	1 cut(s)	947
Bst2UI	CCWGG	2 cut(s)	366, 1159
Bst4CI	ACNGT	3 cut(s)	310, 775, 1227
BstC8I	GCNNGC	2 cut(s)	285, 468
BstDEI	CTNAG	5 cut(s)	174, 451, 486, 1074, 1230
BstDSI	CCRYGG	1 cut(s)	1214
BstF5I	GGATG	4 cut(s)	193, 253, 842, 981
BstFNI	CGCG	1 cut(s)	656
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	8 cut(s)	6, 234, 238, 403, 556, 643, 857, 882
BstMAI	GTCTC	1 cut(s)	970
BstMBI	GATC	8 cut(s)	3, 231, 235, 400, 553, 640, 854, 879
BstNI	CCWGG	2 cut(s)	366, 1159
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	364, 1157
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	1 cut(s)	426
BstV2I	GAAGAC	2 cut(s)	488, 999
BstX2I	RGATCY	2 cut(s)	854, 879
BstXI	CCANNNNNNTGG	1 cut(s)	837
BstYI	RGATCY	2 cut(s)	854, 879
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	92, 303, 780
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	1214
BtrI	CACGTC	1 cut(s)	1108
BtsCI	GGATG	4 cut(s)	193, 253, 842, 981
BveI	ACCTGC	3 cut(s)	774, 1136, 1251
Cac8I	GCNNGC	2 cut(s)	285, 468
CfoI	GCGC	1 cut(s)	530
Cfr10I	RCCGGY	2 cut(s)	287, 1134
Cfr13I	GGNCC	5 cut(s)	268, 301, 778, 797, 1280
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	343
CspAI	ACCGGT	1 cut(s)	1134
CviAII	CATG	6 cut(s)	103, 181, 404, 932, 1024, 1257
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	5 cut(s)	174, 451, 486, 1074, 1230
DpnI	GATC	8 cut(s)	5, 233, 237, 402, 555, 642, 856, 881
DpnII	GATC	8 cut(s)	3, 231, 235, 400, 553, 640, 854, 879
Eco47I	GGWCC	3 cut(s)	268, 797, 1280
Eco47III	AGCGCT	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	681
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	364, 1157
EcoT22I	ATGCAT	1 cut(s)	981
FaeI	CATG	6 cut(s)	106, 184, 407, 935, 1027, 1260
FaqI	GGGAC	3 cut(s)	184, 1013, 1293
FatI	CATG	6 cut(s)	102, 180, 403, 931, 1023, 1256
FauI	CCCGC	1 cut(s)	470
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	1 cut(s)	440
FokI	GGATG	4 cut(s)	200, 260, 829, 988
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	3 cut(s)	420, 1103, 1269
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	1 cut(s)	440
GsuI	CTGGAG	2 cut(s)	338, 1161
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	92, 303, 780
HapII	CCGG	4 cut(s)	271, 288, 316, 1135
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	6 cut(s)	106, 184, 407, 935, 1027, 1260
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HinfI	GANTC	5 cut(s)	75, 172, 484, 539, 1272
HpaII	CCGG	4 cut(s)	271, 288, 316, 1135
HphI	GGTGA	1 cut(s)	1021
Hpy166II	GTNNAC	2 cut(s)	819, 1029
Hpy188I	TCNGA	3 cut(s)	74, 859, 1231
Hpy8I	GTNNAC	2 cut(s)	819, 1029
Hpy99I	CGWCG	2 cut(s)	140, 338
HpyAV	CCTTC	4 cut(s)	103, 506, 779, 1169
HpyCH4III	ACNGT	3 cut(s)	310, 775, 1227
HpyCH4IV	ACGT	2 cut(s)	585, 1107
HpyCH4V	TGCA	7 cut(s)	20, 283, 466, 684, 824, 979, 1260
HpyF3I	CTNAG	5 cut(s)	174, 451, 486, 1074, 1230
HpySE526I	ACGT	2 cut(s)	585, 1107
Hsp92II	CATG	6 cut(s)	106, 184, 407, 935, 1027, 1260
HspAI	GCGC	1 cut(s)	528
Kpn2I	TCCGGA	1 cut(s)	270
Kzo9I	GATC	8 cut(s)	3, 231, 235, 400, 553, 640, 854, 879
LmnI	GCTCC	1 cut(s)	1142
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	4 cut(s)	441, 682, 851, 966
MaeI	CTAG	3 cut(s)	420, 1103, 1269
MaeII	ACGT	2 cut(s)	585, 1107
MaeIII	GTNAC	2 cut(s)	113, 368
MalI	GATC	8 cut(s)	5, 233, 237, 402, 555, 642, 856, 881
MboI	GATC	8 cut(s)	3, 231, 235, 400, 553, 640, 854, 879
MboII	GAAGA	8 cut(s)	37, 40, 493, 521, 619, 737, 950, 1004
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	2 cut(s)	854, 879
MlyI	GAGTC	3 cut(s)	166, 478, 1266
MmeI	TCCRAC	1 cut(s)	165
Mph1103I	ATGCAT	1 cut(s)	981
MroI	TCCGGA	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	942
MseI	TTAA	4 cut(s)	207, 330, 456, 665
MslI	CAYNNNNRTG	2 cut(s)	101, 375
MspI	CCGG	4 cut(s)	271, 288, 316, 1135
MspR9I	CCNGG	2 cut(s)	366, 1159
MunI	CAATTG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	979
MvaI	CCWGG	2 cut(s)	366, 1159
MvnI	CGCG	1 cut(s)	656
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	8 cut(s)	3, 231, 235, 400, 553, 640, 854, 879
NlaIII	CATG	6 cut(s)	106, 184, 407, 935, 1027, 1260
NlaIV	GGNNCC	3 cut(s)	269, 929, 1281
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	981
NspI	RCATGY	1 cut(s)	106
PaqCI	CACCTGC	2 cut(s)	774, 1136
PciI	ACATGT	1 cut(s)	102
PctI	GAATGC	1 cut(s)	979
PdmI	GAANNNNTTC	1 cut(s)	942
PfeI	GAWTC	2 cut(s)	75, 539
PinAI	ACCGGT	1 cut(s)	1134
PkrI	GCNGC	1 cut(s)	441
PleI	GAGTC	3 cut(s)	166, 478, 1266
PpsI	GAGTC	3 cut(s)	166, 478, 1266
PscI	ACATGT	1 cut(s)	102
PshBI	ATTAAT	2 cut(s)	207, 665
Psp6I	CCWGG	2 cut(s)	364, 1157
PspGI	CCWGG	2 cut(s)	364, 1157
PspN4I	GGNNCC	3 cut(s)	269, 929, 1281
PspPI	GGNCC	5 cut(s)	268, 301, 778, 797, 1280
PsrI	GAACNNNNNNTAC	2 cut(s)	106, 138
PsuI	RGATCY	2 cut(s)	854, 879
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	101, 375
SaqAI	TTAA	4 cut(s)	207, 330, 456, 665
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	8 cut(s)	3, 231, 235, 400, 553, 640, 854, 879
Sau96I	GGNCC	5 cut(s)	268, 301, 778, 797, 1280
SchI	GAGTC	3 cut(s)	166, 478, 1266
ScrFI	CCNGG	2 cut(s)	366, 1159
SfaNI	GCATC	4 cut(s)	441, 682, 851, 966
SinI	GGWCC	3 cut(s)	268, 797, 1280
SmiMI	CAYNNNNRTG	2 cut(s)	101, 375
SmlI	CTYRAG	2 cut(s)	7, 1274
SmoI	CTYRAG	2 cut(s)	7, 1274
SsiI	CCGC	1 cut(s)	477
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	3 cut(s)	420, 1103, 1269
StyD4I	CCNGG	2 cut(s)	364, 1157
TaaI	ACNGT	3 cut(s)	310, 775, 1227
TaiI	ACGT	2 cut(s)	588, 1110
TaqI	TCGA	2 cut(s)	234, 783
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	75, 539
Tru1I	TTAA	4 cut(s)	207, 330, 456, 665
Tru9I	TTAA	4 cut(s)	207, 330, 456, 665
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	7 cut(s)	85, 169, 687, 896, 951, 1020, 1212
TspGWI	ACGGA	1 cut(s)	1203
VpaK11BI	GGWCC	3 cut(s)	268, 797, 1280
VspI	ATTAAT	2 cut(s)	207, 665
XapI	RAATTY	6 cut(s)	217, 276, 941, 959, 1199, 1300
XbaI	TCTAGA	1 cut(s)	1102
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	942
XspI	CTAG	3 cut(s)	420, 1103, 1269
Zsp2I	ATGCAT	1 cut(s)	981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.