Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009537

Physical Location & Seq

Genomic Coordinates Forward (+)

13731345 .. 13736822

Gene Structure 5478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G132400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGCCCCATGGGTGTTGAACACAGAGACTTGCTCAGTACAAATAGTACCAGAATCTCATCTGGGTAATCAATTATTTCAAATCTGTGCCAATTTTGGGGCTTTTATGATCTTGAGGTCCTCTCCAACGTATAGGAAGAAAATGGTAGTGGCAGGAAATGGCCTGTTCTACCCAATTGTTGGATTTGCATCATGTGTGGCTTTCATCTACATGTCCTTCGGTGGCTTGGGGACGAATTTACAGGAAAAAACCAAGCTGGGTTTTGTGGAGAGGAATGGGACTCAGTTCATGTTAGATGGCAAAGCATTTTACATTAATGGGTGGAATTCTTACTGGTTAATGGATCATAGTGTGGATGAGTATACCAAACCCAGGGTGCGGGAGATACTGCAAGCTGGTGCGACAATGGGTCTTACCGTGTGCCGAACTTGGGCCTTTAATGATGGAGACTACAATGCCCTCCAGATTTCGCCTGGTCGCTTCAATGAGCAAGTGTTCAAGGCTTTGGATCATGTCATTGTAGAAGCTAGACAACAGGGTATCAGGTTGCTTTTTAGCTTAGTTAATAACTTGCAAGCATATGGTGGGAAGACTCAGTATGTGAAGTGGGCGTGGGATGAAGGTGTTGGTTTGAGCGCTTCCAATGACTCCTTTTTCTTCGATCCTTCCATTCGAAATTATTTCAAGAATTACACTCTCCTAACGAGGAAGAATACTCTCAATGGAATTGAATATAGAGATGATCCTACCATTTTTGCATGGGAGTTAATAAACGAACCCCGTTGCATTACTGATGCTTCAGGCGACACTCTCCAAGATTGGATAGAAGAAATGTCAGCATTTGTTAAAGCAATTGACAAGAAACATCTACTGACTGTGGGCCTTGAAGGATTTTATGGTCCTAAAAACCCCAAAAGGTTGACTGTGAATCCAGAAATGTGGGCATCTAGACTTGGATCAGATTTTATTCGCAACTCCAAGGTCCCAAACATTGATTTTGCTTCTGTTCATATTTACCCTGACCACTGGTTTCATGATAAAGAATTTCACGAGAACCTCAAATTTGTCTCCAAGTGGATGCATTCTCACATAGAAGATGGGGACAAAGAGCTGAATAAACCTGTGATGTTCACCGAATATGGATTGTCAAACCAGAACAAAGACTTTGAACCATCTCAGCGCGATAGATTTTACAAAGTTATTTTAGATGCCATTTACAAATCTGCAAAGAAAAATGGGTCTGGTGCAGGTTCTTTAGTCTGGCAGTTATTCGTCGGAGGAATGGACAAGTATAATGATGAATTTGGGATTGTTCCATGGGAAAGGCCATCTACATATAAGCTGATAATAGAACAATCATGCAGGTTGGCTAGACTCCACGGACCAACTCAACAACAGCGAAATTTGAAAGACTTGTGCTCGCAAAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

478

Amino Acids

54.75

Weight (kDa)

7.61

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20680 AT4G28320
fragaria_vesca	FvH4_6g26240 FvH4_6g26240 FvH4_6g26240
malus_domestica	MD09G1246900.v1.1 MD17G1239800.v1.1
prunus_persica	Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1 Prupe.3G132400_v2.0.a1
pyrus_communis	pycom09g16420 pycom17g24310
rosa_chinensis	RchiOBHm_Chr2g0126631
rosa_laevigata	RLG00000018915
rosa_multiflora	Rmu_sc0002369.1_g000020
rosa_roxburghii	Rroxscaffold_2G00117060
rosa_rugosa	Rorug02G0264100
rosa_samantha	Rh2AG321100 Rh2BG329400 Rh2CG309100
rosa_wichuraiana	Rw2G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1238, 1353
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	1 cut(s)	1182
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	5 cut(s)	351, 516, 656, 737, 964
AcsI	RAATTY	6 cut(s)	235, 325, 1043, 1061, 1301, 1402
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	2 cut(s)	39, 48
AfeI	AGCGCT	1 cut(s)	637
AfiI	CCNNNNNNNGG	5 cut(s)	96, 179, 372, 378, 430
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	9 cut(s)	19, 80, 484, 499, 685, 731, 887, 1169, 1408
AhdI	GACNNNNNGTC	1 cut(s)	408
AjnI	CCWGG	2 cut(s)	371, 472
AluBI	AGCT	6 cut(s)	256, 395, 527, 558, 1111, 1342
AluI	AGCT	6 cut(s)	256, 395, 527, 558, 1111, 1342
Alw21I	GWGCWC	1 cut(s)	1421
Alw26I	GTCTC	3 cut(s)	20, 441, 1072
AlwI	GGATC	5 cut(s)	351, 516, 656, 737, 964
Aor51HI	AGCGCT	1 cut(s)	637
AoxI	GGCC	5 cut(s)	3, 160, 432, 880, 1325
ApoI	RAATTY	6 cut(s)	235, 325, 1043, 1061, 1301, 1402
AseI	ATTAAT	1 cut(s)	315
AspLEI	GCGC	2 cut(s)	638, 1182
AspS9I	GGNCC	7 cut(s)	4, 117, 432, 880, 899, 982, 1382
AsuHPI	GGTGA	1 cut(s)	1123
AsuII	TTCGAA	1 cut(s)	673
AvaII	GGWCC	4 cut(s)	117, 899, 982, 1382
BauI	CACGAG	1 cut(s)	1049
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	1421
BccI	CCATC	5 cut(s)	290, 437, 1091, 1180, 1336
BciT130I	CCWGG	2 cut(s)	373, 474
BcoDI	GTCTC	3 cut(s)	20, 441, 1072
BfaI	CTAG	3 cut(s)	528, 948, 1371
BfoI	RGCGCY	1 cut(s)	639
BfuAI	ACCTGC	2 cut(s)	1238, 1353
Bme1390I	CCNGG	2 cut(s)	373, 474
Bme18I	GGWCC	4 cut(s)	117, 899, 982, 1382
BmeRI	GACNNNNNGTC	1 cut(s)	408
BmgT120I	GGNCC	7 cut(s)	4, 117, 432, 880, 899, 982, 1382
BmiI	GGNNCC	2 cut(s)	6, 984
BmrFI	CCNGG	2 cut(s)	373, 474
BmsI	GCATC	5 cut(s)	197, 784, 953, 1068, 1198
BpiI	GAAGAC	1 cut(s)	596
BplI	GAGNNNNNCTC	4 cut(s)	17, 49, 106, 138
BpmI	CTGGAG	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	673
BpuEI	CTTGAG	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	187
BsaJI	CCNNGG	6 cut(s)	8, 371, 372, 978, 1316, 1378
Bsc4I	CCNNNNNNNGG	5 cut(s)	96, 179, 372, 378, 430
Bse1I	ACTGG	2 cut(s)	338, 1031
Bse8I	GATNNNNATC	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	373, 474
BseDI	CCNNGG	6 cut(s)	8, 371, 372, 978, 1316, 1378
BseGI	GGATG	3 cut(s)	361, 622, 1083
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	5 cut(s)	96, 179, 372, 378, 430
BseMII	CTCAG	4 cut(s)	48, 296, 608, 1190
BseNI	ACTGG	2 cut(s)	338, 1031
BseYI	CCCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	1266
Bsh1236I	CGCG	1 cut(s)	1182
BshFI	GGCC	5 cut(s)	5, 162, 434, 882, 1327
BsiHKAI	GWGCWC	1 cut(s)	1421
BslFI	GGGAC	4 cut(s)	244, 292, 968, 1115
BslI	CCNNNNNNNGG	5 cut(s)	96, 179, 372, 378, 430
BsmAI	GTCTC	3 cut(s)	20, 441, 1072
BsmFI	GGGAC	4 cut(s)	244, 292, 968, 1115
BsmI	GAATGC	1 cut(s)	1081
BsnI	GGCC	5 cut(s)	5, 162, 434, 882, 1327
Bsp119I	TTCGAA	1 cut(s)	673
Bsp1286I	GDGCHC	1 cut(s)	1421
Bsp143I	GATC	6 cut(s)	108, 343, 508, 661, 742, 956
Bsp19I	CCATGG	2 cut(s)	8, 1316
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	5 cut(s)	5, 162, 434, 882, 1327
BspCNI	CTCAG	4 cut(s)	47, 295, 607, 1189
BspFNI	CGCG	1 cut(s)	1182
BspHI	TCATGA	1 cut(s)	1033
BspLI	GGNNCC	2 cut(s)	6, 984
BspMI	ACCTGC	2 cut(s)	1238, 1353
BspPI	GGATC	5 cut(s)	351, 516, 656, 737, 964
BspT104I	TTCGAA	1 cut(s)	673
BsrI	ACTGG	2 cut(s)	338, 1031
BssECI	CCNNGG	6 cut(s)	8, 371, 372, 978, 1316, 1378
BssMI	GATC	6 cut(s)	108, 343, 508, 661, 742, 956
BssNAI	GTATAC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	1049
BssT1I	CCWWGG	3 cut(s)	8, 978, 1316
Bst1107I	GTATAC	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	1049
Bst2UI	CCWGG	2 cut(s)	373, 474
Bst4CI	ACNGT	4 cut(s)	418, 877, 925, 1431
BstBI	TTCGAA	1 cut(s)	673
BstC8I	GCNNGC	3 cut(s)	393, 576, 1421
BstDEI	CTNAG	5 cut(s)	34, 282, 559, 594, 1176
BstDSI	CCRYGG	3 cut(s)	8, 1316, 1378
BstF5I	GGATG	3 cut(s)	361, 622, 1083
BstFNI	CGCG	1 cut(s)	1182
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	2 cut(s)	638, 1182
BstKTI	GATC	6 cut(s)	111, 346, 511, 664, 745, 959
BstMAI	GTCTC	3 cut(s)	20, 441, 1072
BstMBI	GATC	6 cut(s)	108, 343, 508, 661, 742, 956
BstNI	CCWGG	2 cut(s)	373, 474
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	371, 472
BstUI	CGCG	1 cut(s)	1182
BstV2I	GAAGAC	1 cut(s)	596
BstXI	CCANNNNNNTGG	1 cut(s)	939
BstZ17I	GTATAC	1 cut(s)	363
BsuRI	GGCC	5 cut(s)	5, 162, 434, 882, 1327
BtgI	CCRYGG	3 cut(s)	8, 1316, 1378
BtsCI	GGATG	3 cut(s)	361, 622, 1083
BtsIMutI	CAGTG	1 cut(s)	1024
BveI	ACCTGC	2 cut(s)	1238, 1353
Cac8I	GCNNGC	3 cut(s)	393, 576, 1421
CciI	TCATGA	1 cut(s)	1033
CfoI	GCGC	2 cut(s)	638, 1182
Cfr13I	GGNCC	7 cut(s)	4, 117, 432, 880, 899, 982, 1382
Csp6I	GTAC	2 cut(s)	38, 47
CviAII	CATG	9 cut(s)	9, 192, 211, 289, 512, 759, 1034, 1317, 1359
CviQI	GTAC	2 cut(s)	38, 47
DdeI	CTNAG	5 cut(s)	34, 282, 559, 594, 1176
DpnI	GATC	6 cut(s)	110, 345, 510, 663, 744, 958
DpnII	GATC	6 cut(s)	108, 343, 508, 661, 742, 956
DriI	GACNNNNNGTC	1 cut(s)	408
Eam1105I	GACNNNNNGTC	1 cut(s)	408
Eco130I	CCWWGG	3 cut(s)	8, 978, 1316
Eco47I	GGWCC	4 cut(s)	117, 899, 982, 1382
Eco47III	AGCGCT	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	783
EcoO109I	RGGNCCY	2 cut(s)	117, 982
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	371, 472
EcoT14I	CCWWGG	3 cut(s)	8, 978, 1316
EcoT22I	ATGCAT	1 cut(s)	1083
ErhI	CCWWGG	3 cut(s)	8, 978, 1316
FaeI	CATG	9 cut(s)	12, 195, 214, 292, 515, 762, 1037, 1320, 1362
FaqI	GGGAC	4 cut(s)	244, 292, 968, 1115
FatI	CATG	9 cut(s)	8, 191, 210, 288, 511, 758, 1033, 1316, 1358
FauI	CCCGC	1 cut(s)	372
FauNDI	CATATG	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	362
FokI	GGATG	3 cut(s)	368, 629, 1090
FspBI	CTAG	3 cut(s)	528, 948, 1371
GlaI	GCGC	2 cut(s)	637, 1181
GsaI	CCCAGC	1 cut(s)	260
GsuI	CTGGAG	1 cut(s)	446
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	5 cut(s)	5, 162, 434, 882, 1327
HhaI	GCGC	2 cut(s)	638, 1182
Hin1II	CATG	9 cut(s)	12, 195, 214, 292, 515, 762, 1037, 1320, 1362
Hin6I	GCGC	2 cut(s)	636, 1180
HinP1I	GCGC	2 cut(s)	636, 1180
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HinfI	GANTC	6 cut(s)	53, 280, 592, 647, 928, 1374
HphI	GGTGA	1 cut(s)	1123
Hpy166II	GTNNAC	3 cut(s)	363, 921, 1131
Hpy188I	TCNGA	2 cut(s)	961, 1277
Hpy188III	TCNNGA	7 cut(s)	112, 463, 685, 932, 948, 1034, 1049
Hpy8I	GTNNAC	3 cut(s)	363, 921, 1131
Hpy99I	CGWCG	1 cut(s)	1277
HpyAV	CCTTC	4 cut(s)	226, 614, 675, 881
HpyCH4III	ACNGT	4 cut(s)	418, 877, 925, 1431
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	9 cut(s)	188, 391, 574, 758, 786, 1081, 1226, 1247, 1362
HpyF3I	CTNAG	5 cut(s)	34, 282, 559, 594, 1176
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	9 cut(s)	12, 195, 214, 292, 515, 762, 1037, 1320, 1362
HspAI	GCGC	2 cut(s)	636, 1180
Kzo9I	GATC	6 cut(s)	108, 343, 508, 661, 742, 956
LweI	GCATC	5 cut(s)	197, 784, 953, 1068, 1198
MaeI	CTAG	3 cut(s)	528, 948, 1371
MaeII	ACGT	1 cut(s)	128
MalI	GATC	6 cut(s)	110, 345, 510, 663, 744, 958
MboI	GATC	6 cut(s)	108, 343, 508, 661, 742, 956
MboII	GAAGA	6 cut(s)	148, 601, 649, 721, 839, 1106
MfeI	CAATTG	2 cut(s)	174, 852
MhlI	GDGCHC	1 cut(s)	1421
MlyI	GAGTC	4 cut(s)	274, 586, 641, 1368
MmeI	TCCRAC	3 cut(s)	149, 160, 1255
MnlI	CCTC	7 cut(s)	108, 130, 264, 470, 699, 1067, 1271
Mph1103I	ATGCAT	1 cut(s)	1083
MseI	TTAA	6 cut(s)	315, 338, 438, 564, 767, 846
MslI	CAYNNNNRTG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	373, 474
MunI	CAATTG	2 cut(s)	174, 852
Mva1269I	GAATGC	1 cut(s)	1081
MvaI	CCWGG	2 cut(s)	373, 474
MvnI	CGCG	1 cut(s)	1182
NcoI	CCATGG	2 cut(s)	8, 1316
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	6 cut(s)	108, 343, 508, 661, 742, 956
NlaIII	CATG	9 cut(s)	12, 195, 214, 292, 515, 762, 1037, 1320, 1362
NlaIV	GGNNCC	2 cut(s)	6, 984
NsiI	ATGCAT	1 cut(s)	1083
NspI	RCATGY	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	673
PagI	TCATGA	1 cut(s)	1033
PasI	CCCWGGG	1 cut(s)	372
PciI	ACATGT	1 cut(s)	210
PctI	GAATGC	1 cut(s)	1081
PfeI	GAWTC	2 cut(s)	53, 928
PflMI	CCANNNNNTGG	1 cut(s)	179
PleI	GAGTC	4 cut(s)	274, 586, 641, 1368
PpsI	GAGTC	4 cut(s)	274, 586, 641, 1368
PpuMI	RGGWCCY	2 cut(s)	117, 982
PscI	ACATGT	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	315
Psp5II	RGGWCCY	2 cut(s)	117, 982
Psp6I	CCWGG	2 cut(s)	371, 472
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	2 cut(s)	371, 472
PspN4I	GGNNCC	2 cut(s)	6, 984
PspPI	GGNCC	7 cut(s)	4, 117, 432, 880, 899, 982, 1382
PspPPI	RGGWCCY	2 cut(s)	117, 982
RsaI	GTAC	2 cut(s)	39, 48
RsaNI	GTAC	2 cut(s)	38, 47
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	6 cut(s)	315, 338, 438, 564, 767, 846
Sau3AI	GATC	6 cut(s)	108, 343, 508, 661, 742, 956
Sau96I	GGNCC	7 cut(s)	4, 117, 432, 880, 899, 982, 1382
SchI	GAGTC	4 cut(s)	274, 586, 641, 1368
ScrFI	CCNGG	2 cut(s)	373, 474
SduI	GDGCHC	1 cut(s)	1421
SfaNI	GCATC	5 cut(s)	197, 784, 953, 1068, 1198
SfuI	TTCGAA	1 cut(s)	673
SinI	GGWCC	4 cut(s)	117, 899, 982, 1382
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SsiI	CCGC	1 cut(s)	379
SspMI	CTAG	3 cut(s)	528, 948, 1371
StyD4I	CCNGG	2 cut(s)	371, 472
StyI	CCWWGG	3 cut(s)	8, 978, 1316
TaaI	ACNGT	4 cut(s)	418, 877, 925, 1431
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	660, 673
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	53, 928
Tru1I	TTAA	6 cut(s)	315, 338, 438, 564, 767, 846
Tru9I	TTAA	6 cut(s)	315, 338, 438, 564, 767, 846
TscAI	CASTG	1 cut(s)	1031
TspDTI	ATGAA	6 cut(s)	193, 277, 633, 998, 1022, 1314
TspGWI	ACGGA	1 cut(s)	1395
TspRI	CASTG	1 cut(s)	1031
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	4 cut(s)	117, 899, 982, 1382
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	6 cut(s)	235, 325, 1043, 1061, 1301, 1402
XbaI	TCTAGA	1 cut(s)	947
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	3 cut(s)	528, 948, 1371
Zsp2I	ATGCAT	1 cut(s)	1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.