AT2G20920

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009273
Physical Location & Seq
Forward (+)
8998450 .. 9000073
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20920.1

Sequence Viewer

Length: 864 bp
ATGGCAACCGCAGCTCTCTCCGCCGCCCGACCCAACCGCCTTAGCTCAGCCTCCTCCGATGTTCCTCTCCACCCCCTATATCTCCCTACCAAGCTCCAATTTCCTTCCCGTAAGACTCAGCTGTGGCGCTCCGCCGCGATTCTCTTACCCACACGGCGGCGATGCGCTCCGCCTAGAGCTAGTTCTCGCGCCGACGATTCTCCACCCTTCGATATGTCTGTGGAGACGGCGCTTAAGGTTCTCGGAGTCTCCGAAGGAGCTTCCTTCGACGAAATTCTTCGTGCCAAGAAATCGATCCTGGCTTCTCGTAAGGACGACCCCAACGCCATCTCTCAGGCTGAGGCTGCATATGACATGCTGCTGATGCAGAGCCTAAACCAACGCCGAGCAGGAAAAGTTGTAAGCAACAACATTCGCTACGCTGATGTTAAATCTAGTAACCCTCTGGGAACAAGTACTGTGACTCAGTGGATGAAGAATCCACCTGTCTCTGTTGATATGCCTTCCACGAGCGATCTCGGGATACAAGCTGGAGTCTATGGAGCCATGATGGTTTTGACTTATGTGAATGGGAGTTCCTTTGAATCTTCTGGGATGCCTTATGCTGGTGCTGATGTGCCCGGACTTATATTGGCTAGCAGCTTTGGGGCTTCCCTATACTTTATGACCAAAAAGAAAGTCAAGCTAGGGAAAGCAGCTGCGTTGACGGCAGGAGGATTAGTGGCAGGTGCAGTGGTGGGATCAGCCATTGAGACCTGGCTGCACGTTGATGTGGTTCCGTTTCTGGGTCTCCACTCCCCAGCTGCAGTCGTGAGTGAATTCATAGTATTCTCTCAGTTCTTGGTGTCTCTATGCTTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

287

Amino Acids

30.48

Weight (kDa)

9.63

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 85 - 286 2.9e-55 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 716
Acc36I ACCTGC 1 cut(s) 716
AccII CGCG 2 cut(s) 137, 189
AciI CCGC 8 cut(s) 9, 21, 24, 37, 132, 135, 157, 170
AclWI GGATC 2 cut(s) 289, 748
AcsI RAATTY 2 cut(s) 273, 818
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 3 cut(s) 156, 605, 785
AflII CTTAAG 2 cut(s) 233, 856
AgsI TTSAA 1 cut(s) 584
AjnI CCWGG 2 cut(s) 297, 755
Alw26I GTCTC 6 cut(s) 218, 253, 493, 746, 794, 852
AlwI GGATC 2 cut(s) 289, 748
Ama87I CYCGRG 1 cut(s) 518
ApeKI GCWGC 8 cut(s) 11, 344, 358, 639, 695, 698, 760, 803
ApoI RAATTY 2 cut(s) 273, 818
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
Asp700I GAANNNNTTC 1 cut(s) 276
AspLEI GCGC 4 cut(s) 129, 167, 191, 232
AsuC2I CCSGG 1 cut(s) 621
AsuNHI GCTAGC 1 cut(s) 635
AvaI CYCGRG 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 621
BauI CACGAG 1 cut(s) 508
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 8 cut(s) 23, 331, 345, 651, 685, 707, 747, 790
BccI CCATC 2 cut(s) 335, 544
BceAI ACGGC 3 cut(s) 170, 243, 723
BciT130I CCWGG 2 cut(s) 299, 757
BciVI GTATCC 1 cut(s) 516
BcnI CCSGG 1 cut(s) 621
BcoDI GTCTC 6 cut(s) 218, 253, 493, 746, 794, 852
BfaI CTAG 5 cut(s) 174, 180, 435, 636, 686
BfmI CTRYAG 1 cut(s) 804
BfoI RGCGCY 2 cut(s) 130, 233
BfrI CTTAAG 2 cut(s) 233, 856
BfuAI ACCTGC 1 cut(s) 716
BfuI GTATCC 1 cut(s) 516
BlpI GCTNAGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 457
Bme1390I CCNGG 3 cut(s) 299, 621, 757
BmeT110I CYCGRG 1 cut(s) 518
BmiI GGNNCC 2 cut(s) 544, 777
BmrFI CCNGG 3 cut(s) 299, 621, 757
BmsI GCATC 3 cut(s) 152, 354, 585
BmtI GCTAGC 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 552
Bpu10I CCTNAGC 2 cut(s) 41, 339
Bpu1102I GCTNAGC 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 621
Bsa29I ATCGAT 1 cut(s) 293
BsaI GGTCTC 2 cut(s) 746, 794
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 605, 785
BseBI CCWGG 2 cut(s) 299, 757
BseCI ATCGAT 1 cut(s) 293
BseGI GGATG 2 cut(s) 477, 600
BseLI CCNNNNNNNGG 3 cut(s) 156, 605, 785
BseMII CTCAG 6 cut(s) 60, 131, 330, 347, 479, 848
BseRI GAGGAG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 8 cut(s) 23, 331, 345, 651, 685, 707, 747, 790
BseYI CCCAGC 1 cut(s) 799
BsgI GTGCAG 2 cut(s) 746, 750
Bsh1236I CGCG 2 cut(s) 137, 189
BshVI ATCGAT 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 1 cut(s) 621
BslI CCNNNNNNNGG 3 cut(s) 156, 605, 785
BsmAI GTCTC 6 cut(s) 218, 253, 493, 746, 794, 852
BsmBI CGTCTC 1 cut(s) 218
Bso31I GGTCTC 2 cut(s) 746, 794
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 621
Bsp143I GATC 3 cut(s) 294, 514, 740
Bsp1720I GCTNAGC 1 cut(s) 46
BspACI CCGC 8 cut(s) 9, 21, 24, 37, 132, 135, 157, 170
BspCNI CTCAG 6 cut(s) 59, 130, 331, 346, 478, 847
BspDI ATCGAT 1 cut(s) 293
BspFNI CGCG 2 cut(s) 137, 189
BspLI GGNNCC 2 cut(s) 544, 777
BspMAI CTGCAG 1 cut(s) 808
BspMI ACCTGC 1 cut(s) 716
BspOI GCTAGC 1 cut(s) 639
BspPI GGATC 2 cut(s) 289, 748
BspTI CTTAAG 2 cut(s) 233, 856
BspTNI GGTCTC 2 cut(s) 746, 794
BssMI GATC 3 cut(s) 294, 514, 740
BssSI CACGAG 1 cut(s) 508
Bst2BI CACGAG 1 cut(s) 508
Bst2UI CCWGG 2 cut(s) 299, 757
Bst4CI ACNGT 1 cut(s) 460
BstAFI CTTAAG 2 cut(s) 233, 856
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 7 cut(s) 41, 46, 117, 333, 339, 465, 834
BstF5I GGATG 2 cut(s) 477, 600
BstFNI CGCG 2 cut(s) 137, 189
BstH2I RGCGCY 2 cut(s) 130, 233
BstHHI GCGC 4 cut(s) 129, 167, 191, 232
BstKTI GATC 3 cut(s) 297, 517, 743
BstMAI GTCTC 6 cut(s) 218, 253, 493, 746, 794, 852
BstMBI GATC 3 cut(s) 294, 514, 740
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 344, 364, 707
BstNI CCWGG 2 cut(s) 299, 757
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 3 cut(s) 297, 619, 755
BstSFI CTRYAG 1 cut(s) 804
BstSLI GKGCMC 1 cut(s) 621
BstUI CGCG 2 cut(s) 137, 189
BstV1I GCAGC 8 cut(s) 23, 331, 345, 651, 685, 707, 747, 790
Bsu15I ATCGAT 1 cut(s) 293
BsuI GTATCC 1 cut(s) 516
BsuTUI ATCGAT 1 cut(s) 293
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 2 cut(s) 477, 600
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 2 cut(s) 473, 738
BveI ACCTGC 1 cut(s) 716
Cac8I GCNNGC 1 cut(s) 637
CfoI GCGC 4 cut(s) 129, 167, 191, 232
ClaI ATCGAT 1 cut(s) 293
Csp6I GTAC 1 cut(s) 456
CviAII CATG 2 cut(s) 355, 547
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 7 cut(s) 41, 46, 117, 333, 339, 465, 834
DpnI GATC 3 cut(s) 296, 516, 742
DpnII GATC 3 cut(s) 294, 514, 740
EciI GGCGGA 3 cut(s) 10, 121, 159
Eco31I GGTCTC 2 cut(s) 746, 794
Eco88I CYCGRG 1 cut(s) 518
EcoRI GAATTC 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 297, 755
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 358, 550
FatI CATG 2 cut(s) 354, 546
FauNDI CATATG 1 cut(s) 349
FokI GGATG 2 cut(s) 484, 607
FspBI CTAG 5 cut(s) 174, 180, 435, 636, 686
GlaI GCGC 4 cut(s) 128, 166, 190, 231
GsaI CCCAGC 1 cut(s) 803
GsuI CTGGAG 1 cut(s) 552
HaeII RGCGCY 2 cut(s) 130, 233
HapII CCGG 1 cut(s) 621
HhaI GCGC 4 cut(s) 129, 167, 191, 232
Hin1II CATG 2 cut(s) 358, 550
Hin6I GCGC 4 cut(s) 127, 165, 189, 230
HinP1I GCGC 4 cut(s) 127, 165, 189, 230
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HinfI GANTC 8 cut(s) 115, 139, 197, 246, 463, 478, 534, 584
HpaII CCGG 1 cut(s) 621
Hpy166II GTNNAC 1 cut(s) 705
Hpy188I TCNGA 3 cut(s) 58, 245, 253
Hpy188III TCNNGA 2 cut(s) 520, 811
Hpy8I GTNNAC 1 cut(s) 705
Hpy99I CGWCG 2 cut(s) 197, 272
HpyAV CCTTC 5 cut(s) 114, 217, 248, 274, 513
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 5 cut(s) 347, 367, 731, 763, 806
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 344, 364, 707
HpyF3I CTNAG 7 cut(s) 41, 46, 117, 333, 339, 465, 834
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 2 cut(s) 358, 550
HspAI GCGC 4 cut(s) 127, 165, 189, 230
Kzo9I GATC 3 cut(s) 294, 514, 740
LmnI GCTCC 5 cut(s) 99, 134, 172, 257, 542
Lsp1109I GCAGC 8 cut(s) 23, 331, 345, 651, 685, 707, 747, 790
LweI GCATC 3 cut(s) 152, 354, 585
MaeI CTAG 5 cut(s) 174, 180, 435, 636, 686
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 437, 460
MalI GATC 3 cut(s) 296, 516, 742
MboI GATC 3 cut(s) 294, 514, 740
MboII GAAGA 3 cut(s) 269, 487, 579
MhlI GDGCHC 1 cut(s) 621
MluCI AATT 3 cut(s) 98, 273, 818
MlyI GAGTC 4 cut(s) 109, 255, 457, 543
MnlI CCTC 6 cut(s) 61, 64, 75, 334, 453, 707
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 3 cut(s) 234, 429, 857
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 3 cut(s) 121, 698, 803
MspCI CTTAAG 2 cut(s) 233, 856
MspI CCGG 1 cut(s) 621
MspR9I CCNGG 3 cut(s) 299, 621, 757
MvaI CCWGG 2 cut(s) 299, 757
MvnI CGCG 2 cut(s) 137, 189
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 344, 364, 707
NciI CCSGG 1 cut(s) 621
NdeI CATATG 1 cut(s) 349
NdeII GATC 3 cut(s) 294, 514, 740
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 2 cut(s) 358, 550
NlaIV GGNNCC 2 cut(s) 544, 777
NmeAIII GCCGAG 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 716
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 4 cut(s) 139, 197, 478, 584
PleI GAGTC 4 cut(s) 109, 254, 457, 542
PpsI GAGTC 4 cut(s) 109, 254, 457, 542
Psp6I CCWGG 2 cut(s) 297, 755
PspFI CCCAGC 1 cut(s) 799
PspGI CCWGG 2 cut(s) 297, 755
PspN4I GGNNCC 2 cut(s) 544, 777
PstI CTGCAG 1 cut(s) 808
PvuII CAGCTG 3 cut(s) 121, 698, 803
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
RseI CAYNNNNRTG 1 cut(s) 768
SaqAI TTAA 3 cut(s) 234, 429, 857
Sau3AI GATC 3 cut(s) 294, 514, 740
ScaI AGTACT 1 cut(s) 457
SchI GAGTC 4 cut(s) 109, 255, 457, 543
ScrFI CCNGG 3 cut(s) 299, 621, 757
SduI GDGCHC 1 cut(s) 621
SfaNI GCATC 3 cut(s) 152, 354, 585
SfcI CTRYAG 1 cut(s) 804
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 2 cut(s) 233, 856
SmoI CTYRAG 2 cut(s) 233, 856
Sse9I AATT 3 cut(s) 98, 273, 818
SsiI CCGC 8 cut(s) 9, 21, 24, 37, 132, 135, 157, 170
SspMI CTAG 5 cut(s) 174, 180, 435, 636, 686
StyD4I CCNGG 3 cut(s) 297, 619, 755
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 1 cut(s) 768
TaqI TCGA 3 cut(s) 210, 267, 293
TasI AATT 3 cut(s) 98, 273, 818
TatI WGTACW 1 cut(s) 455
TauI GCSGC 3 cut(s) 26, 137, 160
TfiI GAWTC 4 cut(s) 139, 197, 478, 584
Tru1I TTAA 3 cut(s) 234, 429, 857
Tru9I TTAA 3 cut(s) 234, 429, 857
TscAI CASTG 2 cut(s) 473, 738
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 8 cut(s) 11, 344, 358, 639, 695, 698, 760, 803
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 2 cut(s) 488, 811
TspGWI ACGGA 1 cut(s) 768
TspRI CASTG 2 cut(s) 473, 738
Vha464I CTTAAG 2 cut(s) 233, 856
XapI RAATTY 2 cut(s) 273, 818
XceI RCATGY 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 5 cut(s) 174, 180, 435, 636, 686
ZrmI AGTACT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.