Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009273

Physical Location & Seq

Genomic Coordinates Reverse (-)

15404695 .. 15407079

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACCCCCTCCGCGGCAAAGACTCAGCCCAACAAAACAACCCATATCGTCACGCACGCTACTTTCGCAGCAAATCCAGCCTCACATTTCTTCAAACACATGGCAGCCACTCTCTCCGTCCGGCCCAACCGCCTCTCCGCCGGCTCCTCCTTCCCCCGCCCGCCCCTCCGCCGCCCCAGCCCCACCGGAATCCGAAAACCCGCCACGCAATTCGAGCCTTGGAGGGGCTCCATCGTCCCATCCCGCCGCACATTAACCTGGGCTGCCACGGCCGCCTCCAGAGCCGACGACAACGCACCGTTCGAGATGTCAGTCGAGAACGCCCTCAAGCTCCTCGGCGTCTCAGACGGTGCCTCGTTCGACGAAATTCTTCGCGCCAAGAACTCGATTGTCGCGGCTTGTAAAGATGACCAGGAGGCGATTGCACAGGCTGAGGCTGCCTACGACATGTTGCTTATGAGAAGCTTAACTCAGCGACGGGCAGGGAAAGTTGTGAATAGCAGCGTTCGTTATGCTGATGTTAAGCCAGTGAGTGCTCCTGGGATTGGATCAGTGCCGCAGTGGCTGCAGGCTACTGTGAAGAATCCACCCATTGCAGTGGAAACGCCCTCGACAAGTGATCTGGGTGTACAAGTTGGTGTCTATGGAGCTTTGATGGCCTTAACTTATGTCAATGGAGCTTCAGGTTCTTCTTCGGGGCCATATGGAGGGGCTGATGTTCCTGGACTGATCCTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAAGAATATTAAGTTAGGGAAGGCGACCATCATAACTGTAGGGGGGCTTGTTGCTGGTGCCGTGGTGGGTTCAGCTGTAGAGAATTTTCTGCAAGTAGACATTGTTCCATTTCTTGGCATCCACTCTCCTGCTGCCGTAGACACCCGTTGTGATGAACCTGATTTCCCAAGATTTACTGTCTTGTTAAACGTCATTCGTCTTCGACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

328

Amino Acids

34.5

Weight (kDa)

9.75

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20920
fragaria_vesca	FvH4_2g15590 FvH4_2g15590 FvH4_2g15590
malus_domestica	MD05G1124500.v1.1 MD10G1127300.v1.1
prunus_persica	Prupe.8G168200_v2.0.a1 Prupe.8G168200_v2.0.a1
pyrus_communis	pycom05g11850 pycom10g10910
rosa_chinensis	RchiOBHm_Chr6g0278771
rosa_laevigata	RLG00000013194
rosa_multiflora	Rmu_sc0004380.1_g000002 Rmu_sc0027143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189640 Rroxscaffold_7G00189910
rosa_rugosa	Rorug06G0118800
rosa_samantha	Rh6AG227600 Rh6BG233200 Rh6CG235400 Rh6DG226900
rosa_wichuraiana	Rw6G019970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	350, 830
AccB7I	CCANNNNNTGG	1 cut(s)	887
AccI	GTMKAC	2 cut(s)	870, 912
AccII	CGCG	3 cut(s)	14, 375, 395
AclWI	GGATC	2 cut(s)	556, 724
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	366, 856
AcuI	CTGAAG	1 cut(s)	666
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	2 cut(s)	630, 761
AfiI	CCNNNNNNNGG	5 cut(s)	13, 224, 545, 707, 887
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	5 cut(s)	257, 411, 538, 721, 732
AloI	GAACNNNNNNTCC	2 cut(s)	921, 953
AluBI	AGCT	7 cut(s)	331, 465, 650, 680, 744, 752, 848
AluI	AGCT	7 cut(s)	331, 465, 650, 680, 744, 752, 848
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	2 cut(s)	556, 724
AlwNI	CAGNNNCTG	1 cut(s)	565
AoxI	GGCC	4 cut(s)	122, 270, 657, 698
ApeKI	GCWGC	7 cut(s)	68, 104, 263, 437, 501, 565, 905
ApoI	RAATTY	2 cut(s)	366, 856
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	123, 698
BanI	GGYRCC	2 cut(s)	350, 830
BanII	GRGCYC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	965
Bbv12I	GWGCWC	1 cut(s)	538
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	7 cut(s)	80, 116, 250, 424, 513, 552, 892
BccI	CCATC	4 cut(s)	239, 247, 649, 809
BceAI	ACGGC	3 cut(s)	285, 818, 893
BciT130I	CCWGG	5 cut(s)	259, 413, 540, 723, 734
BcoDI	GTCTC	1 cut(s)	346
BfmI	CTRYAG	3 cut(s)	566, 810, 849
BglI	GCCNNNNNGGC	1 cut(s)	562
Bme1390I	CCNGG	5 cut(s)	259, 413, 540, 723, 734
BmgT120I	GGNCC	2 cut(s)	123, 698
BmiI	GGNNCC	5 cut(s)	145, 229, 352, 699, 832
BmrFI	CCNGG	5 cut(s)	259, 413, 540, 723, 734
BmsI	GCATC	1 cut(s)	900
BpiI	GAAGAC	1 cut(s)	965
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	7 cut(s)	12, 218, 258, 267, 334, 539, 834
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 224, 545, 707, 887
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	5 cut(s)	259, 413, 540, 723, 734
BseDI	CCNNGG	7 cut(s)	12, 218, 258, 267, 334, 539, 834
BseGI	GGATG	2 cut(s)	239, 891
BseLI	CCNNNNNNNGG	5 cut(s)	13, 224, 545, 707, 887
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	4 cut(s)	38, 357, 423, 485
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	2 cut(s)	136, 323
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	7 cut(s)	80, 116, 250, 424, 513, 552, 892
BseYI	CCCAGC	1 cut(s)	176
Bsh1236I	CGCG	3 cut(s)	14, 375, 395
Bsh1285I	CGRYCG	2 cut(s)	273, 980
BshFI	GGCC	4 cut(s)	124, 272, 659, 700
BshNI	GGYRCC	2 cut(s)	350, 830
BsiEI	CGRYCG	2 cut(s)	273, 980
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	3 cut(s)	121, 141, 186
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	5 cut(s)	13, 224, 545, 707, 887
BsmAI	GTCTC	1 cut(s)	346
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	124, 272, 659, 700
Bsp1286I	GDGCHC	2 cut(s)	230, 538
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	3 cut(s)	548, 619, 729
BspANI	GGCC	4 cut(s)	124, 272, 659, 700
BspCNI	CTCAG	4 cut(s)	37, 356, 424, 484
BspFNI	CGCG	3 cut(s)	14, 375, 395
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	5 cut(s)	145, 229, 352, 699, 832
BspMAI	CTGCAG	1 cut(s)	570
BspPI	GGATC	2 cut(s)	556, 724
BspT107I	GGYRCC	2 cut(s)	350, 830
BsrDI	GCAATG	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	7 cut(s)	12, 218, 258, 267, 334, 539, 834
BssMI	GATC	3 cut(s)	548, 619, 729
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	5 cut(s)	259, 413, 540, 723, 734
Bst4CI	ACNGT	6 cut(s)	300, 350, 577, 811, 952, 981
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	565
BstAUI	TGTACA	1 cut(s)	628
BstC8I	GCNNGC	4 cut(s)	57, 142, 161, 570
BstDEI	CTNAG	4 cut(s)	24, 343, 432, 471
BstDSI	CCRYGG	3 cut(s)	12, 267, 834
BstF5I	GGATG	2 cut(s)	239, 891
BstFNI	CGCG	3 cut(s)	14, 375, 395
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	3 cut(s)	551, 622, 732
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	3 cut(s)	548, 619, 729
BstMCI	CGRYCG	2 cut(s)	273, 980
BstNI	CCWGG	5 cut(s)	259, 413, 540, 723, 734
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	5 cut(s)	257, 411, 538, 721, 732
BstSFI	CTRYAG	3 cut(s)	566, 810, 849
BstUI	CGCG	3 cut(s)	14, 375, 395
BstV1I	GCAGC	7 cut(s)	80, 116, 250, 424, 513, 552, 892
BstV2I	GAAGAC	1 cut(s)	965
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	4 cut(s)	124, 272, 659, 700
BtgI	CCRYGG	3 cut(s)	12, 267, 834
BtsCI	GGATG	2 cut(s)	239, 891
BtsI	GCAGTG	2 cut(s)	566, 603
BtsIMutI	CAGTG	4 cut(s)	534, 558, 566, 603
Cac8I	GCNNGC	4 cut(s)	57, 142, 161, 570
CaiI	CAGNNNCTG	1 cut(s)	565
CciI	TCATGA	1 cut(s)	765
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	123, 698
Cfr42I	CCGCGG	1 cut(s)	15
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	629, 760
CviAII	CATG	3 cut(s)	100, 448, 766
CviQI	GTAC	2 cut(s)	629, 760
DdeI	CTNAG	4 cut(s)	24, 343, 432, 471
DpnI	GATC	3 cut(s)	550, 621, 731
DpnII	GATC	3 cut(s)	548, 619, 729
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
EciI	GGCGGA	2 cut(s)	127, 158
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	230
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	666
EcoRII	CCWGG	5 cut(s)	257, 411, 538, 721, 732
EcoT14I	CCWWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	3 cut(s)	103, 451, 769
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	99, 447, 765
FauI	CCCGC	4 cut(s)	164, 168, 208, 251
FauNDI	CATATG	1 cut(s)	703
FblI	GTMKAC	2 cut(s)	870, 912
FokI	GGATG	2 cut(s)	226, 878
FriOI	GRGCYC	1 cut(s)	230
GlaI	GCGC	1 cut(s)	376
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	4 cut(s)	124, 272, 659, 700
HapII	CCGG	3 cut(s)	121, 141, 186
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	103, 451, 769
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	3 cut(s)	22, 189, 583
HpaII	CCGG	3 cut(s)	121, 141, 186
Hpy166II	GTNNAC	3 cut(s)	629, 871, 913
Hpy188I	TCNGA	2 cut(s)	194, 346
Hpy188III	TCNNGA	4 cut(s)	279, 304, 316, 766
Hpy8I	GTNNAC	3 cut(s)	629, 871, 913
Hpy99I	CGWCG	3 cut(s)	290, 365, 480
HpyAV	CCTTC	2 cut(s)	160, 787
HpyCH4III	ACNGT	6 cut(s)	300, 350, 577, 811, 952, 981
HpyCH4IV	ACGT	1 cut(s)	963
HpyCH4V	TGCA	4 cut(s)	425, 568, 596, 865
HpyF3I	CTNAG	4 cut(s)	24, 343, 432, 471
HpySE526I	ACGT	1 cut(s)	963
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	103, 451, 769
HspAI	GCGC	1 cut(s)	375
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	548, 619, 729
LmnI	GCTCC	7 cut(s)	149, 233, 336, 541, 647, 677, 749
Lsp1109I	GCAGC	7 cut(s)	80, 116, 250, 424, 513, 552, 892
LweI	GCATC	1 cut(s)	900
MaeII	ACGT	1 cut(s)	963
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	550, 621, 731
MboI	GATC	3 cut(s)	548, 619, 729
MboII	GAAGA	6 cut(s)	82, 362, 592, 681, 684, 965
MhlI	GDGCHC	2 cut(s)	230, 538
MluCI	AATT	3 cut(s)	209, 366, 856
MlyI	GAGTC	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	6 cut(s)	254, 467, 522, 662, 783, 959
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	2 cut(s)	14, 848
MspI	CCGG	3 cut(s)	121, 141, 186
MspR9I	CCNGG	5 cut(s)	259, 413, 540, 723, 734
MvaI	CCWGG	5 cut(s)	259, 413, 540, 723, 734
MvnI	CGCG	3 cut(s)	14, 375, 395
NaeI	GCCGGC	1 cut(s)	142
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	3 cut(s)	548, 619, 729
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	103, 451, 769
NlaIV	GGNNCC	5 cut(s)	145, 229, 352, 699, 832
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	451
PagI	TCATGA	1 cut(s)	765
PciI	ACATGT	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	189, 583
PflMI	CCANNNNNTGG	1 cut(s)	887
PfoI	TCCNGGA	1 cut(s)	721
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	447
Psp6I	CCWGG	5 cut(s)	257, 411, 538, 721, 732
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	5 cut(s)	257, 411, 538, 721, 732
PspN4I	GGNNCC	5 cut(s)	145, 229, 352, 699, 832
PspPI	GGNCC	2 cut(s)	123, 698
PsrI	GAACNNNNNNTAC	2 cut(s)	861, 893
PstI	CTGCAG	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	2 cut(s)	630, 761
RsaNI	GTAC	2 cut(s)	629, 760
RseI	CAYNNNNRTG	1 cut(s)	596
SacII	CCGCGG	1 cut(s)	15
SaqAI	TTAA	6 cut(s)	254, 467, 522, 662, 783, 959
Sau3AI	GATC	3 cut(s)	548, 619, 729
Sau96I	GGNCC	2 cut(s)	123, 698
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	5 cut(s)	259, 413, 540, 723, 734
SduI	GDGCHC	2 cut(s)	230, 538
SfaNI	GCATC	1 cut(s)	900
SfcI	CTRYAG	3 cut(s)	566, 810, 849
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	209, 366, 856
SspI	AATATT	1 cut(s)	781
StyD4I	CCNGG	5 cut(s)	257, 411, 538, 721, 732
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	6 cut(s)	300, 350, 577, 811, 952, 981
TaiI	ACGT	1 cut(s)	966
TaqI	TCGA	7 cut(s)	213, 303, 315, 360, 386, 611, 976
TasI	AATT	3 cut(s)	209, 366, 856
TatI	WGTACW	2 cut(s)	628, 759
TauI	GCSGC	6 cut(s)	17, 174, 249, 275, 398, 559
TfiI	GAWTC	2 cut(s)	189, 583
Tru1I	TTAA	6 cut(s)	254, 467, 522, 662, 783, 959
Tru9I	TTAA	6 cut(s)	254, 467, 522, 662, 783, 959
TscAI	CASTG	4 cut(s)	534, 558, 566, 603
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	7 cut(s)	68, 104, 263, 437, 501, 565, 905
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	754, 942
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	4 cut(s)	534, 558, 566, 603
Van91I	CCANNNNNTGG	1 cut(s)	887
XapI	RAATTY	2 cut(s)	366, 856
XceI	RCATGY	1 cut(s)	451
XmiI	GTMKAC	2 cut(s)	870, 912
XmnI	GAANNNNTTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.