Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004380.1

Orthogroup ID

OG0009273

Physical Location & Seq

Genomic Coordinates Reverse (-)

4581 .. 8387

Gene Structure 3807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004380.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggcagccactctctccgtccggccccaccgcttctccgccggctcctccttccctcgccctccggtccgccgacccggcccggcccgcatccgaaaacccgacgaccaattcgaaccctggagaggctcaatcactctctcccgccgcccattagccccggcggtccaagccagctccagagccgacgactcggttcccttcgagatgtcggtggagaacgccctcaagctcctcggagtcgccgacggcgcgtcgttcgatgaaatacttcgcgccaagaaaaacatcgtcgcttcctgtaaggatgaccaggaggcgattgcaagggttgaggctgcatacgacatgttacttatgagaagcttaactcagcggcgggctggcaaagttgtaaatagtagcgttcgttacgctgatgtaaagccggtgaatgctcctccaatgccacagtggctgcaggctactgttaagaatccacctattgcggttgaaacaccctcgactagtgatctcggtgtacaagttggtgtgtatggagctttgatggccttaacttatgtcaatggaacttcgacttcttctttgccatatggaggggctgatgttcctggactgatcctggctggtagctttggagcttccttgtacttcatgactaaaaagaatattaagttagggaaggctactatcataactatagggggacttgcggctggtgcagtagttggttcagtagtagagaattggctgcaggtagacattgttccatttcttggcatacactctcctgctgctgtagtatggaaccaccacacccgggttcgaatcccgtcgacgctgattggatttaaatctcaatctattcttggtggccagggggaggaagcgttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

298

Amino Acids

31.76

Weight (kDa)

9.77

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20920
fragaria_vesca	FvH4_2g15590 FvH4_2g15590 FvH4_2g15590
malus_domestica	MD05G1124500.v1.1 MD10G1127300.v1.1
prunus_persica	Prupe.8G168200_v2.0.a1 Prupe.8G168200_v2.0.a1
pyrus_communis	pycom05g11850 pycom10g10910
rosa_chinensis	RchiOBHm_Chr6g0278771
rosa_laevigata	RLG00000013194
rosa_multiflora	Rmu_sc0004380.1_g000002 Rmu_sc0027143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189640 Rroxscaffold_7G00189910
rosa_rugosa	Rorug06G0118800
rosa_samantha	Rh6AG227600 Rh6BG233200 Rh6CG235400 Rh6DG226900
rosa_wichuraiana	Rw6G019970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	745
AccB7I	CCANNNNNTGG	1 cut(s)	776
AccI	GTMKAC	2 cut(s)	759, 836
AccII	CGCG	2 cut(s)	254, 276
AclWI	GGATC	1 cut(s)	613
AcoI	YGGCCR	1 cut(s)	874
AfaI	GTAC	2 cut(s)	522, 650
AfiI	CCNNNNNNNGG	5 cut(s)	125, 596, 776, 820, 883
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	494
AhdI	GACNNNNNGTC	1 cut(s)	253
AhlI	ACTAGT	1 cut(s)	506
AjnI	CCWGG	5 cut(s)	119, 312, 610, 621, 876
AloI	GAACNNNNNNTCC	1 cut(s)	875
AluBI	AGCT	6 cut(s)	177, 232, 366, 542, 633, 641
AluI	AGCT	6 cut(s)	177, 232, 366, 542, 633, 641
AlwI	GGATC	1 cut(s)	613
AlwNI	CAGNNNCTG	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	819
AoxI	GGCC	5 cut(s)	23, 79, 84, 549, 874
ApeKI	GCWGC	5 cut(s)	5, 338, 457, 751, 794
ArsI	GACNNNNNNTTYG	4 cut(s)	95, 127, 568, 600
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	2 cut(s)	254, 278
AspS9I	GGNCC	5 cut(s)	24, 67, 80, 85, 166
AsuC2I	CCSGG	5 cut(s)	78, 83, 161, 820, 821
AsuHPI	GGTGA	1 cut(s)	442
AsuII	TTCGAA	2 cut(s)	114, 826
AvaI	CYCGRG	1 cut(s)	819
AvaII	GGWCC	2 cut(s)	67, 166
BalI	TGGCCA	1 cut(s)	876
BbvI	GCAGC	5 cut(s)	17, 325, 444, 738, 781
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	5 cut(s)	121, 314, 612, 623, 878
BcnI	CCSGG	5 cut(s)	78, 83, 161, 820, 821
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	4 cut(s)	458, 699, 752, 798
BfuAI	ACCTGC	1 cut(s)	745
BglI	GCCNNNNNGGC	2 cut(s)	78, 454
BisI	GCNGC	8 cut(s)	6, 148, 339, 377, 458, 714, 752, 795
BlsI	GCNGC	8 cut(s)	7, 149, 340, 378, 459, 715, 753, 796
Bme18I	GGWCC	2 cut(s)	67, 166
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	819
BmgT120I	GGNCC	5 cut(s)	24, 67, 80, 85, 166
BmiI	GGNNCC	4 cut(s)	26, 46, 198, 809
BmsI	GCATC	1 cut(s)	99
BpmI	CTGGAG	2 cut(s)	142, 163
Bpu14I	TTCGAA	2 cut(s)	114, 826
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	5 cut(s)	78, 83, 161, 820, 821
BsaBI	GATNNNNATC	1 cut(s)	853
BsaJI	CCNNGG	5 cut(s)	119, 159, 235, 819, 877
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	3 cut(s)	20, 50, 875
Bsc4I	CCNNNNNNNGG	5 cut(s)	125, 596, 776, 820, 883
Bse118I	RCCGGY	2 cut(s)	41, 427
Bse8I	GATNNNNATC	1 cut(s)	853
BseBI	CCWGG	5 cut(s)	121, 314, 612, 623, 878
BseDI	CCNNGG	5 cut(s)	119, 159, 235, 819, 877
BseGI	GGATG	2 cut(s)	90, 313
BseJI	GATNNNNATC	1 cut(s)	853
BseLI	CCNNNNNNNGG	5 cut(s)	125, 596, 776, 820, 883
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	3 cut(s)	37, 224, 429
BseXI	GCAGC	5 cut(s)	17, 325, 444, 738, 781
BsgI	GTGCAG	1 cut(s)	741
Bsh1236I	CGCG	2 cut(s)	254, 276
BshFI	GGCC	5 cut(s)	25, 81, 86, 551, 876
BsiHKCI	CYCGRG	1 cut(s)	819
BsiSI	CCGG	8 cut(s)	22, 42, 65, 78, 83, 161, 428, 820
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	5 cut(s)	125, 596, 776, 820, 883
BsmFI	GGGAC	1 cut(s)	720
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	5 cut(s)	25, 81, 86, 551, 876
BsoBI	CYCGRG	1 cut(s)	819
Bsp119I	TTCGAA	2 cut(s)	114, 826
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	2 cut(s)	511, 618
BspANI	GGCC	5 cut(s)	25, 81, 86, 551, 876
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	2 cut(s)	254, 276
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	4 cut(s)	26, 46, 198, 809
BspMAI	CTGCAG	2 cut(s)	462, 756
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	1 cut(s)	613
BspT104I	TTCGAA	2 cut(s)	114, 826
BsrFI	RCCGGY	2 cut(s)	41, 427
BsrGI	TGTACA	1 cut(s)	520
BssAI	RCCGGY	2 cut(s)	41, 427
BssECI	CCNNGG	5 cut(s)	119, 159, 235, 819, 877
BssMI	GATC	2 cut(s)	511, 618
Bst2UI	CCWGG	5 cut(s)	121, 314, 612, 623, 878
Bst4CI	ACNGT	2 cut(s)	453, 469
BstAUI	TGTACA	1 cut(s)	520
BstBI	TTCGAA	2 cut(s)	114, 826
BstC8I	GCNNGC	6 cut(s)	43, 88, 175, 381, 385, 462
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	90, 313
BstFNI	CGCG	2 cut(s)	254, 276
BstHHI	GCGC	2 cut(s)	254, 278
BstKTI	GATC	2 cut(s)	514, 621
BstMBI	GATC	2 cut(s)	511, 618
BstMWI	GCNNNNNNNGC	7 cut(s)	78, 87, 170, 251, 454, 548, 719
BstNI	CCWGG	5 cut(s)	121, 314, 612, 623, 878
BstNSI	RCATGY	1 cut(s)	352
BstSFI	CTRYAG	4 cut(s)	458, 699, 752, 798
BstUI	CGCG	2 cut(s)	254, 276
BstV1I	GCAGC	5 cut(s)	17, 325, 444, 738, 781
BsuRI	GGCC	5 cut(s)	25, 81, 86, 551, 876
BtsCI	GGATG	2 cut(s)	90, 313
BtsIMutI	CAGTG	1 cut(s)	458
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	6 cut(s)	43, 88, 175, 381, 385, 462
CaiI	CAGNNNCTG	1 cut(s)	457
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	2 cut(s)	254, 278
Cfr10I	RCCGGY	2 cut(s)	41, 427
Cfr13I	GGNCC	5 cut(s)	24, 67, 80, 85, 166
Cfr9I	CCCGGG	1 cut(s)	819
CpoI	CGGWCCG	1 cut(s)	67
CseI	GACGC	2 cut(s)	243, 847
Csp6I	GTAC	2 cut(s)	521, 649
CspI	CGGWCCG	1 cut(s)	67
CviAII	CATG	2 cut(s)	349, 655
CviQI	GTAC	2 cut(s)	521, 649
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	2 cut(s)	513, 620
DpnII	GATC	2 cut(s)	511, 618
DraI	TTTAAA	1 cut(s)	853
DriI	GACNNNNNGTC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	874
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EciI	GGCGGA	2 cut(s)	28, 59
Eco47I	GGWCC	2 cut(s)	67, 166
Eco88I	CYCGRG	1 cut(s)	819
EcoRII	CCWGG	5 cut(s)	119, 312, 610, 621, 876
FaeI	CATG	2 cut(s)	352, 658
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	2 cut(s)	348, 654
FauI	CCCGC	3 cut(s)	95, 152, 372
FauNDI	CATATG	1 cut(s)	592
FblI	GTMKAC	2 cut(s)	759, 836
Fnu4HI	GCNGC	8 cut(s)	6, 148, 339, 377, 458, 714, 752, 795
FokI	GGATG	2 cut(s)	77, 320
Fsp4HI	GCNGC	8 cut(s)	6, 148, 339, 377, 458, 714, 752, 795
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	2 cut(s)	253, 277
GluI	GCNGC	8 cut(s)	6, 148, 339, 377, 458, 714, 752, 795
GsuI	CTGGAG	2 cut(s)	142, 163
HaeIII	GGCC	5 cut(s)	25, 81, 86, 551, 876
HapII	CCGG	8 cut(s)	22, 42, 65, 78, 83, 161, 428, 820
HgaI	GACGC	2 cut(s)	243, 847
HhaI	GCGC	2 cut(s)	254, 278
Hin1II	CATG	2 cut(s)	352, 658
Hin6I	GCGC	2 cut(s)	252, 276
HinP1I	GCGC	2 cut(s)	252, 276
HincII	GTYRAC	1 cut(s)	837
HindII	GTYRAC	1 cut(s)	837
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	4 cut(s)	191, 240, 475, 828
HpaII	CCGG	8 cut(s)	22, 42, 65, 78, 83, 161, 428, 820
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	521, 760, 837
Hpy188I	TCNGA	3 cut(s)	95, 239, 896
Hpy188III	TCNNGA	3 cut(s)	180, 205, 655
Hpy8I	GTNNAC	3 cut(s)	521, 760, 837
Hpy99I	CGWCG	7 cut(s)	107, 191, 251, 259, 296, 838, 841
HpyAV	CCTTC	3 cut(s)	61, 211, 676
HpyCH4III	ACNGT	2 cut(s)	453, 469
HpyCH4V	TGCA	5 cut(s)	326, 341, 460, 722, 754
HpyF10VI	GCNNNNNNNGC	7 cut(s)	78, 87, 170, 251, 454, 548, 719
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	352, 658
HspAI	GCGC	2 cut(s)	252, 276
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	511, 618
LmnI	GCTCC	6 cut(s)	50, 182, 237, 442, 539, 638
Lsp1109I	GCAGC	5 cut(s)	17, 325, 444, 738, 781
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	351, 410
MalI	GATC	2 cut(s)	513, 620
MboI	GATC	2 cut(s)	511, 618
MboII	GAAGA	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	876
MluCI	AATT	2 cut(s)	110, 745
MluNI	TGGCCA	1 cut(s)	876
MlyI	GAGTC	2 cut(s)	185, 249
Mox20I	TGGCCA	1 cut(s)	876
MroNI	GCCGGC	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	876
MseI	TTAA	5 cut(s)	368, 471, 554, 672, 852
Msp20I	TGGCCA	1 cut(s)	876
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	8 cut(s)	22, 42, 65, 78, 83, 161, 428, 820
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	5 cut(s)	121, 314, 612, 623, 878
MvnI	CGCG	2 cut(s)	254, 276
MwoI	GCNNNNNNNGC	7 cut(s)	78, 87, 170, 251, 454, 548, 719
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	5 cut(s)	78, 83, 161, 820, 821
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	2 cut(s)	511, 618
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	352, 658
NlaIV	GGNNCC	4 cut(s)	26, 46, 198, 809
NspI	RCATGY	1 cut(s)	352
NspV	TTCGAA	2 cut(s)	114, 826
PagI	TCATGA	1 cut(s)	654
PciI	ACATGT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 243
PctI	GAATGC	1 cut(s)	439
PdiI	GCCGGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	475, 828
PflMI	CCANNNNNTGG	1 cut(s)	776
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	8 cut(s)	7, 149, 340, 378, 459, 715, 753, 796
PleI	GAGTC	2 cut(s)	185, 248
PpsI	GAGTC	2 cut(s)	185, 248
PscI	ACATGT	1 cut(s)	348
Psp6I	CCWGG	5 cut(s)	119, 312, 610, 621, 876
PspGI	CCWGG	5 cut(s)	119, 312, 610, 621, 876
PspN4I	GGNNCC	4 cut(s)	26, 46, 198, 809
PspPI	GGNCC	5 cut(s)	24, 67, 80, 85, 166
PsrI	GAACNNNNNNTAC	2 cut(s)	750, 782
PstI	CTGCAG	2 cut(s)	462, 756
PstNI	CAGNNNCTG	1 cut(s)	457
RsaI	GTAC	2 cut(s)	522, 650
RsaNI	GTAC	2 cut(s)	521, 649
Rsr2I	CGGWCCG	1 cut(s)	67
RsrII	CGGWCCG	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	835
SaqAI	TTAA	5 cut(s)	368, 471, 554, 672, 852
SatI	GCNGC	8 cut(s)	6, 148, 339, 377, 458, 714, 752, 795
Sau3AI	GATC	2 cut(s)	511, 618
Sau96I	GGNCC	5 cut(s)	24, 67, 80, 85, 166
SchI	GAGTC	2 cut(s)	185, 249
SetI	ASST	8 cut(s)	179, 234, 368, 484, 544, 635, 643, 759
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	4 cut(s)	458, 699, 752, 798
SfuI	TTCGAA	2 cut(s)	114, 826
SgrDI	CGTCGACG	1 cut(s)	835
SinI	GGWCC	2 cut(s)	67, 166
SmaI	CCCGGG	1 cut(s)	821
SmiI	ATTTAAAT	1 cut(s)	853
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	2 cut(s)	110, 745
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	1 cut(s)	507
SwaI	ATTTAAAT	1 cut(s)	853
TaaI	ACNGT	2 cut(s)	453, 469
TaqI	TCGA	7 cut(s)	114, 204, 261, 503, 575, 826, 836
TasI	AATT	2 cut(s)	110, 745
TatI	WGTACW	2 cut(s)	520, 648
TauI	GCSGC	3 cut(s)	150, 379, 716
TfiI	GAWTC	2 cut(s)	475, 828
Tru1I	TTAA	5 cut(s)	368, 471, 554, 672, 852
Tru9I	TTAA	5 cut(s)	368, 471, 554, 672, 852
TscAI	CASTG	1 cut(s)	458
TseI	GCWGC	5 cut(s)	5, 338, 457, 751, 794
TspDTI	ATGAA	2 cut(s)	279, 643
TspGWI	ACGGA	1 cut(s)	7
TspMI	CCCGGG	1 cut(s)	819
TspRI	CASTG	1 cut(s)	458
Van91I	CCANNNNNTGG	1 cut(s)	776
VpaK11BI	GGWCC	2 cut(s)	67, 166
XceI	RCATGY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450
XmaI	CCCGGG	1 cut(s)	819
XmiI	GTMKAC	2 cut(s)	759, 836
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.