FvH4_2g15590

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009273
Physical Location & Seq
Reverse (-)
13698187 .. 13700190
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15590.t3

Sequence Viewer

Length: 855 bp
ATGGCAGCCACTCTCTCCGTCCGGCCCCACCGCTTCTCCGCCGGCTCCTCCTTCCCTCGCCCTCCCGTCCGCCGACCCGGCCCGGCCCGCTTCCGTAAACCCGACGACCAATTCGAACCCTGGAGAGCCTCCATCGTCCTCTCCCGCCGCCCATTAGCTCCGCCCGTCCAAGCCAGCTCCCGAGCCGACGACTCCGTCCCGTTCGAGATGTCGGTGGAGAACGCCCTCAAGCTCCTCGGTGTCTCCGACGGCGCGTCCTTCGATGAAATCCTACGCGCCAAGAAAAACATCGTCGCTTCCTGTAAGGATGACCAGGAGGCCATTGCTCAGGTTGAGGCGGCCTACGATATGTTACTTATGAGAAGCTTAACTCAGCGGCGAGCGGGCAAAGTTGTAAATAGTAGCGTTCGGTATGCTGATGTAAAGCCGGTGAATGCTCCTCCAATGCCTCAGTGGCTTCAGGCTACTGTTAAGAATCCGCCTGTTGCAGTTGAAACACCGTCGACAAGTGATCTGGGTGTACAAGCCGGTGTGTATGGAGCTTTGATGGCCTTGACTTATGTCAATGGAACTTCAACTTCTTCTTTGCCGTATGGGGGAGCTGATGTTCCTGGACTGATCCTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAAGAATATTAAGTTAGGGAAGGCTACTATCATAACTATAGGGGGACTTGCAGCTGGTGCAGTAGTTGGTTCAGTAGTAGAGAATTGGCTCCAGGTAGACATTGTTCCATTTCTTGGCATACACTCTCCTGCTGCTGTAGTAAGCGAATTTATTCTTTTCTCGCAATTATTGGTCTCCCTATATTTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

285

Amino Acids

30.34

Weight (kDa)

9.57

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 126 - 298 2.8e-45 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 776
AccBSI CCGCTC 1 cut(s) 383
AccI GTMKAC 2 cut(s) 503, 759
AccII CGCG 2 cut(s) 254, 276
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 1 cut(s) 809
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 2 cut(s) 522, 650
AfiI CCNNNNNNNGG 2 cut(s) 596, 776
AgsI TTSAA 2 cut(s) 494, 576
AhdI GACNNNNNGTC 1 cut(s) 253
AjnI CCWGG 5 cut(s) 119, 312, 610, 621, 753
AloI GAACNNNNNNTCC 2 cut(s) 591, 623
AluBI AGCT 9 cut(s) 158, 177, 232, 366, 542, 602, 633, 641, 716
AluI AGCT 9 cut(s) 158, 177, 232, 366, 542, 602, 633, 641, 716
Alw26I GTCTC 2 cut(s) 247, 841
AlwI GGATC 1 cut(s) 613
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 6 cut(s) 23, 79, 84, 318, 339, 549
ApeKI GCWGC 3 cut(s) 5, 713, 794
ApoI RAATTY 1 cut(s) 809
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
Asp700I GAANNNNTTC 1 cut(s) 813
AspLEI GCGC 2 cut(s) 254, 278
AspS9I GGNCC 3 cut(s) 24, 80, 85
AsuC2I CCSGG 2 cut(s) 78, 83
AsuHPI GGTGA 1 cut(s) 442
AsuII TTCGAA 1 cut(s) 114
AvaI CYCGRG 1 cut(s) 180
BbvI GCAGC 3 cut(s) 17, 725, 781
BccI CCATC 2 cut(s) 140, 541
BceAI ACGGC 2 cut(s) 265, 574
BciT130I CCWGG 5 cut(s) 121, 314, 612, 623, 755
BcnI CCSGG 2 cut(s) 78, 83
BcoDI GTCTC 2 cut(s) 247, 841
BfmI CTRYAG 2 cut(s) 699, 798
BglI GCCNNNNNGGC 2 cut(s) 78, 454
BisI GCNGC 6 cut(s) 6, 148, 339, 377, 714, 795
BlsI GCNGC 6 cut(s) 7, 149, 340, 378, 715, 796
Bme1390I CCNGG 7 cut(s) 78, 83, 121, 314, 612, 623, 755
BmeRI GACNNNNNGTC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 3 cut(s) 24, 80, 85
BmiI GGNNCC 3 cut(s) 26, 46, 752
BmrFI CCNGG 7 cut(s) 78, 83, 121, 314, 612, 623, 755
BoxI GACNNNNGTC 1 cut(s) 560
BpmI CTGGAG 2 cut(s) 142, 737
Bpu10I CCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 78, 83
BsaI GGTCTC 1 cut(s) 841
BsaJI CCNNGG 2 cut(s) 119, 235
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 591, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 776
Bse118I RCCGGY 3 cut(s) 41, 427, 527
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 5 cut(s) 121, 314, 612, 623, 755
BseDI CCNNGG 2 cut(s) 119, 235
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 596, 776
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 3 cut(s) 341, 386, 464
BseRI GAGGAG 3 cut(s) 37, 224, 429
BseXI GCAGC 3 cut(s) 17, 725, 781
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 2 cut(s) 254, 276
BshFI GGCC 6 cut(s) 25, 81, 86, 320, 341, 551
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 6 cut(s) 22, 42, 78, 83, 428, 528
BslFI GGGAC 2 cut(s) 182, 720
BslI CCNNNNNNNGG 2 cut(s) 596, 776
BsmAI GTCTC 2 cut(s) 247, 841
BsmFI GGGAC 2 cut(s) 182, 720
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 6 cut(s) 25, 81, 86, 320, 341, 551
Bso31I GGTCTC 1 cut(s) 841
BsoBI CYCGRG 1 cut(s) 180
Bsp119I TTCGAA 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 2 cut(s) 511, 618
BspANI GGCC 6 cut(s) 25, 81, 86, 320, 341, 551
BspCNI CTCAG 3 cut(s) 340, 385, 463
BspFNI CGCG 2 cut(s) 254, 276
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 3 cut(s) 26, 46, 752
BspPI GGATC 1 cut(s) 613
BspT104I TTCGAA 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 841
BsrBI CCGCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 3 cut(s) 41, 427, 527
BsrGI TGTACA 1 cut(s) 520
BssAI RCCGGY 3 cut(s) 41, 427, 527
BssECI CCNNGG 2 cut(s) 119, 235
BssMI GATC 2 cut(s) 511, 618
Bst2UI CCWGG 5 cut(s) 121, 314, 612, 623, 755
Bst4CI ACNGT 2 cut(s) 469, 501
BstAPI GCANNNNNTGC 1 cut(s) 719
BstAUI TGTACA 1 cut(s) 520
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 5 cut(s) 43, 88, 175, 381, 385
BstDEI CTNAG 3 cut(s) 327, 372, 450
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 2 cut(s) 254, 276
BstHHI GCGC 2 cut(s) 254, 278
BstKTI GATC 2 cut(s) 514, 621
BstMAI GTCTC 2 cut(s) 247, 841
BstMBI GATC 2 cut(s) 511, 618
BstMWI GCNNNNNNNGC 5 cut(s) 78, 87, 454, 548, 719
BstNI CCWGG 5 cut(s) 121, 314, 612, 623, 755
BstPAI GACNNNNGTC 1 cut(s) 560
BstSCI CCNGG 7 cut(s) 76, 81, 119, 312, 610, 621, 753
BstSFI CTRYAG 2 cut(s) 699, 798
BstUI CGCG 2 cut(s) 254, 276
BstV1I GCAGC 3 cut(s) 17, 725, 781
BsuRI GGCC 6 cut(s) 25, 81, 86, 320, 341, 551
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 5 cut(s) 43, 88, 175, 381, 385
CciI TCATGA 1 cut(s) 654
CfoI GCGC 2 cut(s) 254, 278
Cfr10I RCCGGY 3 cut(s) 41, 427, 527
Cfr13I GGNCC 3 cut(s) 24, 80, 85
CseI GACGC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 521, 649
CviAII CATG 1 cut(s) 655
CviQI GTAC 2 cut(s) 521, 649
DdeI CTNAG 3 cut(s) 327, 372, 450
DpnI GATC 2 cut(s) 513, 620
DpnII GATC 2 cut(s) 511, 618
DrdI GACNNNNNNGTC 1 cut(s) 194
DriI GACNNNNNGTC 1 cut(s) 253
DseDI GACNNNNNNGTC 1 cut(s) 194
Eam1105I GACNNNNNGTC 1 cut(s) 253
EciI GGCGGA 4 cut(s) 28, 59, 150, 468
Eco31I GGTCTC 1 cut(s) 841
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 180
EcoRII CCWGG 5 cut(s) 119, 312, 610, 621, 753
FaeI CATG 1 cut(s) 658
FaqI GGGAC 2 cut(s) 182, 720
FatI CATG 1 cut(s) 654
FauI CCCGC 3 cut(s) 95, 152, 376
FblI GTMKAC 2 cut(s) 503, 759
Fnu4HI GCNGC 6 cut(s) 6, 148, 339, 377, 714, 795
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 6 cut(s) 6, 148, 339, 377, 714, 795
GlaI GCGC 2 cut(s) 253, 277
GluI GCNGC 6 cut(s) 6, 148, 339, 377, 714, 795
GsuI CTGGAG 2 cut(s) 142, 737
HaeIII GGCC 6 cut(s) 25, 81, 86, 320, 341, 551
HapII CCGG 6 cut(s) 22, 42, 78, 83, 428, 528
HgaI GACGC 1 cut(s) 243
HhaI GCGC 2 cut(s) 254, 278
Hin1II CATG 1 cut(s) 658
Hin6I GCGC 2 cut(s) 252, 276
HinP1I GCGC 2 cut(s) 252, 276
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 2 cut(s) 191, 475
HpaII CCGG 6 cut(s) 22, 42, 78, 83, 428, 528
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 4 cut(s) 98, 504, 521, 760
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 3 cut(s) 180, 205, 655
Hpy8I GTNNAC 4 cut(s) 98, 504, 521, 760
Hpy99I CGWCG 5 cut(s) 107, 191, 251, 296, 505
HpyAV CCTTC 3 cut(s) 61, 268, 676
HpyCH4III ACNGT 2 cut(s) 469, 501
HpyCH4V TGCA 3 cut(s) 488, 713, 722
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 87, 454, 548, 719
HpyF3I CTNAG 3 cut(s) 327, 372, 450
Hsp92II CATG 1 cut(s) 658
HspAI GCGC 2 cut(s) 252, 276
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 2 cut(s) 511, 618
LmnI GCTCC 9 cut(s) 50, 163, 182, 237, 442, 539, 599, 638, 756
Lsp1109I GCAGC 3 cut(s) 17, 725, 781
MaeIII GTNAC 1 cut(s) 351
MalI GATC 2 cut(s) 513, 620
MbiI CCGCTC 1 cut(s) 383
MboI GATC 2 cut(s) 511, 618
MboII GAAGA 1 cut(s) 573
MluCI AATT 4 cut(s) 110, 745, 809, 827
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 270
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 813
MseI TTAA 3 cut(s) 368, 471, 672
MspA1I CMGCKG 2 cut(s) 376, 716
MspI CCGG 6 cut(s) 22, 42, 78, 83, 428, 528
MspR9I CCNGG 7 cut(s) 78, 83, 121, 314, 612, 623, 755
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 5 cut(s) 121, 314, 612, 623, 755
MvnI CGCG 2 cut(s) 254, 276
MwoI GCNNNNNNNGC 5 cut(s) 78, 87, 454, 548, 719
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 78, 83
NdeII GATC 2 cut(s) 511, 618
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 658
NlaIV GGNNCC 3 cut(s) 26, 46, 752
NspV TTCGAA 1 cut(s) 114
PagI TCATGA 1 cut(s) 654
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 243
PctI GAATGC 1 cut(s) 439
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 813
PfeI GAWTC 1 cut(s) 475
PflFI GACNNNGTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 776
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 6 cut(s) 7, 149, 340, 378, 715, 796
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 560
Psp6I CCWGG 5 cut(s) 119, 312, 610, 621, 753
PspGI CCWGG 5 cut(s) 119, 312, 610, 621, 753
PspN4I GGNNCC 3 cut(s) 26, 46, 752
PspPI GGNCC 3 cut(s) 24, 80, 85
PsrI GAACNNNNNNTAC 2 cut(s) 750, 782
PsyI GACNNNGTC 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 2 cut(s) 522, 650
RsaNI GTAC 2 cut(s) 521, 649
SalI GTCGAC 1 cut(s) 502
SaqAI TTAA 3 cut(s) 368, 471, 672
SatI GCNGC 6 cut(s) 6, 148, 339, 377, 714, 795
Sau3AI GATC 2 cut(s) 511, 618
Sau96I GGNCC 3 cut(s) 24, 80, 85
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 7 cut(s) 78, 83, 121, 314, 612, 623, 755
SfcI CTRYAG 2 cut(s) 699, 798
SfuI TTCGAA 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 110, 745, 809, 827
SspI AATATT 1 cut(s) 670
StyD4I CCNGG 7 cut(s) 76, 81, 119, 312, 610, 621, 753
TaaI ACNGT 2 cut(s) 469, 501
TaqI TCGA 4 cut(s) 114, 204, 261, 503
TasI AATT 4 cut(s) 110, 745, 809, 827
TatI WGTACW 2 cut(s) 520, 648
TauI GCSGC 3 cut(s) 150, 341, 379
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 3 cut(s) 368, 471, 672
Tru9I TTAA 3 cut(s) 368, 471, 672
TscAI CASTG 1 cut(s) 458
TseI GCWGC 3 cut(s) 5, 713, 794
TspDTI ATGAA 2 cut(s) 279, 643
TspGWI ACGGA 3 cut(s) 7, 83, 184
TspRI CASTG 1 cut(s) 458
Tth111I GACNNNGTC 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 776
XapI RAATTY 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 450
XmiI GTMKAC 2 cut(s) 503, 759
XmnI GAANNNNTTC 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.