Rroxscaffold_7G00189910

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009273
Physical Location & Seq
Forward (+)
29735695 .. 29737653
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189910.1

Sequence Viewer

Length: 855 bp
ATGGCAGCCACTCTCTCCGTCCGGCCCCACCGCTTCTCCGCCGGCTCCTCCTTCCCTCGCCCTCCCGTCCGCCGACCCGGCCCGGCCCGCATCCGAAAACCCGACGACCAATTCGAACCCTGGAGAGGCTCAATCACTCTCTCCCGCCGCCCATTAGCCCCGGCGGTCCAAGCCAGCTCCAGAGCCGACGACTCCGTTCCCTTCGAGATGTCGGTGGAGAACGCCCTCAAGCTCCTCGGAGTCGCCGACGGCGCGTCGTTCGATGAAATACTTCGCGCCAAGAAAAACATCGTCGCTTCCTGTAAGGATGACCAGGAGGCGATTGCAAGGGTTGAGGCTGCATACGACATGTTACTTATGAGAAGCTTAACTCAGCGGCGAGCTGGCAAAGTTGTAAATAGTAGTGTTCGTTACGCTGATGTAAAGCCGGTGAATGCTCCTCCAATGCCGCAGTGGCTGCAGGCGACTGTTAAGAATCCACCTATTGCGGTTGAAACACCCTCGACAAGTGATCTCGGTGTACAAGTTGGTGTGTATGGAGCTTTGATGGCTTTAACTTATGTCAATGGAACTTCGACTTCTTCTTTGCCGTATGGAGGGGCTGATGTTCCTGGACTGATCCTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACTAAAAAGAATATTAAGTTAGGGAAGGCTACTATCATAACCATAGGGGGACTTGCGGCTGGTGCAGTAGTTGGTTCAGTAGTAGAGAATTGGCTGCAGGTAGACATTGTTCCATTTCTTGGCATACACTCTCCTGCTGCTGTAGTAAGCGAATTTATTCTTTTCTCGCAATTATTGGTCTCCCTATATTTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

284

Amino Acids

30.32

Weight (kDa)

9.67

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 84 - 283 6.5e-56 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 745
AccB7I CCANNNNNTGG 1 cut(s) 776
AccI GTMKAC 1 cut(s) 759
AccII CGCG 2 cut(s) 254, 276
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 1 cut(s) 809
AfaI GTAC 2 cut(s) 522, 650
AfiI CCNNNNNNNGG 3 cut(s) 125, 596, 776
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 1 cut(s) 494
AhdI GACNNNNNGTC 1 cut(s) 253
AjnI CCWGG 4 cut(s) 119, 312, 610, 621
AluBI AGCT 7 cut(s) 177, 232, 366, 383, 542, 633, 641
AluI AGCT 7 cut(s) 177, 232, 366, 383, 542, 633, 641
Alw26I GTCTC 1 cut(s) 841
AlwI GGATC 1 cut(s) 613
AlwNI CAGNNNCTG 1 cut(s) 457
AoxI GGCC 3 cut(s) 23, 79, 84
ApeKI GCWGC 5 cut(s) 5, 338, 457, 751, 794
ApoI RAATTY 1 cut(s) 809
ArsI GACNNNNNNTTYG 4 cut(s) 95, 127, 568, 600
Asp700I GAANNNNTTC 2 cut(s) 270, 813
AspLEI GCGC 2 cut(s) 254, 278
AspS9I GGNCC 4 cut(s) 24, 80, 85, 166
AsuC2I CCSGG 3 cut(s) 78, 83, 161
AsuHPI GGTGA 1 cut(s) 442
AsuII TTCGAA 1 cut(s) 114
AvaII GGWCC 1 cut(s) 166
BbvI GCAGC 5 cut(s) 17, 325, 444, 738, 781
BccI CCATC 1 cut(s) 541
BceAI ACGGC 2 cut(s) 265, 574
BciT130I CCWGG 4 cut(s) 121, 314, 612, 623
BcnI CCSGG 3 cut(s) 78, 83, 161
BcoDI GTCTC 1 cut(s) 841
BfmI CTRYAG 3 cut(s) 458, 752, 798
BfuAI ACCTGC 1 cut(s) 745
BglI GCCNNNNNGGC 2 cut(s) 78, 454
BisI GCNGC 9 cut(s) 6, 148, 339, 377, 449, 458, 714, 752, 795
BlsI GCNGC 9 cut(s) 7, 149, 340, 378, 450, 459, 715, 753, 796
Bme1390I CCNGG 7 cut(s) 78, 83, 121, 161, 314, 612, 623
Bme18I GGWCC 1 cut(s) 166
BmeRI GACNNNNNGTC 1 cut(s) 253
BmgT120I GGNCC 4 cut(s) 24, 80, 85, 166
BmiI GGNNCC 2 cut(s) 26, 46
BmrFI CCNGG 7 cut(s) 78, 83, 121, 161, 314, 612, 623
BmsI GCATC 1 cut(s) 99
BpmI CTGGAG 2 cut(s) 142, 163
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 3 cut(s) 78, 83, 161
BsaI GGTCTC 1 cut(s) 841
BsaJI CCNNGG 3 cut(s) 119, 159, 235
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 596, 776
Bse118I RCCGGY 2 cut(s) 41, 427
BseBI CCWGG 4 cut(s) 121, 314, 612, 623
BseDI CCNNGG 3 cut(s) 119, 159, 235
BseGI GGATG 2 cut(s) 90, 313
BseLI CCNNNNNNNGG 3 cut(s) 125, 596, 776
BseMII CTCAG 1 cut(s) 386
BseRI GAGGAG 3 cut(s) 37, 224, 429
BseXI GCAGC 5 cut(s) 17, 325, 444, 738, 781
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 2 cut(s) 254, 276
BshFI GGCC 3 cut(s) 25, 81, 86
BsiSI CCGG 6 cut(s) 22, 42, 78, 83, 161, 428
BslFI GGGAC 1 cut(s) 720
BslI CCNNNNNNNGG 3 cut(s) 125, 596, 776
BsmAI GTCTC 1 cut(s) 841
BsmFI GGGAC 1 cut(s) 720
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 3 cut(s) 25, 81, 86
Bso31I GGTCTC 1 cut(s) 841
Bsp119I TTCGAA 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 2 cut(s) 511, 618
BspANI GGCC 3 cut(s) 25, 81, 86
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 2 cut(s) 254, 276
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 2 cut(s) 26, 46
BspMAI CTGCAG 2 cut(s) 462, 756
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 1 cut(s) 613
BspT104I TTCGAA 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 841
BsrFI RCCGGY 2 cut(s) 41, 427
BsrGI TGTACA 1 cut(s) 520
BssAI RCCGGY 2 cut(s) 41, 427
BssECI CCNNGG 3 cut(s) 119, 159, 235
BssMI GATC 2 cut(s) 511, 618
Bst2UI CCWGG 4 cut(s) 121, 314, 612, 623
Bst4CI ACNGT 1 cut(s) 469
BstAPI GCANNNNNTGC 1 cut(s) 457
BstAUI TGTACA 1 cut(s) 520
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 6 cut(s) 43, 88, 175, 381, 385, 462
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 90, 313
BstFNI CGCG 2 cut(s) 254, 276
BstHHI GCGC 2 cut(s) 254, 278
BstKTI GATC 2 cut(s) 514, 621
BstMAI GTCTC 1 cut(s) 841
BstMBI GATC 2 cut(s) 511, 618
BstMWI GCNNNNNNNGC 8 cut(s) 78, 87, 170, 251, 454, 457, 548, 719
BstNI CCWGG 4 cut(s) 121, 314, 612, 623
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 7 cut(s) 76, 81, 119, 159, 312, 610, 621
BstSFI CTRYAG 3 cut(s) 458, 752, 798
BstUI CGCG 2 cut(s) 254, 276
BstV1I GCAGC 5 cut(s) 17, 325, 444, 738, 781
BsuRI GGCC 3 cut(s) 25, 81, 86
BtsCI GGATG 2 cut(s) 90, 313
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 1 cut(s) 458
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 6 cut(s) 43, 88, 175, 381, 385, 462
CaiI CAGNNNCTG 1 cut(s) 457
CciI TCATGA 1 cut(s) 654
CfoI GCGC 2 cut(s) 254, 278
Cfr10I RCCGGY 2 cut(s) 41, 427
Cfr13I GGNCC 4 cut(s) 24, 80, 85, 166
CseI GACGC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 521, 649
CviAII CATG 2 cut(s) 349, 655
CviQI GTAC 2 cut(s) 521, 649
DdeI CTNAG 1 cut(s) 372
DpnI GATC 2 cut(s) 513, 620
DpnII GATC 2 cut(s) 511, 618
DriI GACNNNNNGTC 1 cut(s) 253
Eam1105I GACNNNNNGTC 1 cut(s) 253
EciI GGCGGA 2 cut(s) 28, 59
Eco31I GGTCTC 1 cut(s) 841
Eco47I GGWCC 1 cut(s) 166
EcoRII CCWGG 4 cut(s) 119, 312, 610, 621
FaeI CATG 2 cut(s) 352, 658
FaqI GGGAC 1 cut(s) 720
FatI CATG 2 cut(s) 348, 654
FauI CCCGC 2 cut(s) 95, 152
FblI GTMKAC 1 cut(s) 759
Fnu4HI GCNGC 9 cut(s) 6, 148, 339, 377, 449, 458, 714, 752, 795
FokI GGATG 2 cut(s) 77, 320
Fsp4HI GCNGC 9 cut(s) 6, 148, 339, 377, 449, 458, 714, 752, 795
GlaI GCGC 2 cut(s) 253, 277
GluI GCNGC 9 cut(s) 6, 148, 339, 377, 449, 458, 714, 752, 795
GsuI CTGGAG 2 cut(s) 142, 163
HaeIII GGCC 3 cut(s) 25, 81, 86
HapII CCGG 6 cut(s) 22, 42, 78, 83, 161, 428
HgaI GACGC 1 cut(s) 243
HhaI GCGC 2 cut(s) 254, 278
Hin1II CATG 2 cut(s) 352, 658
Hin6I GCGC 2 cut(s) 252, 276
HinP1I GCGC 2 cut(s) 252, 276
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 3 cut(s) 191, 240, 475
HpaII CCGG 6 cut(s) 22, 42, 78, 83, 161, 428
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 2 cut(s) 521, 760
Hpy188I TCNGA 2 cut(s) 95, 239
Hpy188III TCNNGA 3 cut(s) 180, 205, 655
Hpy8I GTNNAC 2 cut(s) 521, 760
Hpy99I CGWCG 5 cut(s) 107, 191, 251, 259, 296
HpyAV CCTTC 3 cut(s) 61, 211, 676
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 5 cut(s) 326, 341, 460, 722, 754
HpyF10VI GCNNNNNNNGC 8 cut(s) 78, 87, 170, 251, 454, 457, 548, 719
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 2 cut(s) 352, 658
HspAI GCGC 2 cut(s) 252, 276
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 2 cut(s) 511, 618
LmnI GCTCC 6 cut(s) 50, 182, 237, 442, 539, 638
Lsp1109I GCAGC 5 cut(s) 17, 325, 444, 738, 781
LweI GCATC 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 351, 410
MalI GATC 2 cut(s) 513, 620
MboI GATC 2 cut(s) 511, 618
MboII GAAGA 1 cut(s) 573
MluCI AATT 4 cut(s) 110, 745, 809, 827
MlyI GAGTC 2 cut(s) 185, 249
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 2 cut(s) 270, 813
MseI TTAA 4 cut(s) 368, 471, 554, 672
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 6 cut(s) 22, 42, 78, 83, 161, 428
MspR9I CCNGG 7 cut(s) 78, 83, 121, 161, 314, 612, 623
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 4 cut(s) 121, 314, 612, 623
MvnI CGCG 2 cut(s) 254, 276
MwoI GCNNNNNNNGC 8 cut(s) 78, 87, 170, 251, 454, 457, 548, 719
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 3 cut(s) 78, 83, 161
NdeII GATC 2 cut(s) 511, 618
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 352, 658
NlaIV GGNNCC 2 cut(s) 26, 46
NspI RCATGY 1 cut(s) 352
NspV TTCGAA 1 cut(s) 114
PagI TCATGA 1 cut(s) 654
PciI ACATGT 1 cut(s) 348
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 243
PctI GAATGC 1 cut(s) 439
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 2 cut(s) 270, 813
PfeI GAWTC 1 cut(s) 475
PflMI CCANNNNNTGG 1 cut(s) 776
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 9 cut(s) 7, 149, 340, 378, 450, 459, 715, 753, 796
PleI GAGTC 2 cut(s) 185, 248
PpsI GAGTC 2 cut(s) 185, 248
PscI ACATGT 1 cut(s) 348
Psp6I CCWGG 4 cut(s) 119, 312, 610, 621
PspGI CCWGG 4 cut(s) 119, 312, 610, 621
PspN4I GGNNCC 2 cut(s) 26, 46
PspPI GGNCC 4 cut(s) 24, 80, 85, 166
PsrI GAACNNNNNNTAC 2 cut(s) 750, 782
PstI CTGCAG 2 cut(s) 462, 756
PstNI CAGNNNCTG 1 cut(s) 457
RsaI GTAC 2 cut(s) 522, 650
RsaNI GTAC 2 cut(s) 521, 649
SaqAI TTAA 4 cut(s) 368, 471, 554, 672
SatI GCNGC 9 cut(s) 6, 148, 339, 377, 449, 458, 714, 752, 795
Sau3AI GATC 2 cut(s) 511, 618
Sau96I GGNCC 4 cut(s) 24, 80, 85, 166
SchI GAGTC 2 cut(s) 185, 249
ScrFI CCNGG 7 cut(s) 78, 83, 121, 161, 314, 612, 623
SetI ASST 9 cut(s) 179, 234, 368, 385, 484, 544, 635, 643, 759
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 3 cut(s) 458, 752, 798
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 110, 745, 809, 827
SspI AATATT 1 cut(s) 670
StyD4I CCNGG 7 cut(s) 76, 81, 119, 159, 312, 610, 621
TaaI ACNGT 1 cut(s) 469
TaqI TCGA 5 cut(s) 114, 204, 261, 503, 575
TasI AATT 4 cut(s) 110, 745, 809, 827
TatI WGTACW 2 cut(s) 520, 648
TauI GCSGC 4 cut(s) 150, 379, 451, 716
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 4 cut(s) 368, 471, 554, 672
Tru9I TTAA 4 cut(s) 368, 471, 554, 672
TscAI CASTG 1 cut(s) 458
TseI GCWGC 5 cut(s) 5, 338, 457, 751, 794
TspDTI ATGAA 2 cut(s) 279, 643
TspGWI ACGGA 2 cut(s) 7, 184
TspRI CASTG 1 cut(s) 458
Van91I CCANNNNNTGG 1 cut(s) 776
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 809
XceI RCATGY 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 759
XmnI GAANNNNTTC 2 cut(s) 270, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.