Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009165

Physical Location & Seq

Genomic Coordinates Reverse (-)

9000450 .. 9001837

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATCGTTTGCGTCGCCGTCGTCGGCCACCAGAACAATCCGCTTTACATACAAAGCTTCACGGATGCTGACGATGCTCTCAAGCTCCACCACATTGTTCATTGCTCCCTTGATGTCATCGAAGAGCGAGTGAACAATCCGAAAAAGTCTGGTACAACACTGAACGAGGCTTTTCTTGGCTTGCTCTATCCTACTGTGAACTACAAAGTGTATGGTTACTTGACTAATACCAAGGTTAAATTTATATTGGTCACTACTGATTTGGATGTTAGAGACACCGATGTGAGAAGTTTCTTCAGGAAGTTCCATGCTGCTTACGTTGATGCAGTCTCAAACCCCTTTCATGTCCCTGGCAAAAAGATAACCTCGAGAACCTTTGCGCAAACTGTAAGCAACATCGTTGGATCGTACGGTTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1279 Sedlin_N

Protein Analysis

140

Amino Acids

15.68

Weight (kDa)

8.54

Isoelectric Point (pI)

19.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sedlin_N	PF04628	7 - 134	1.2e-35	Sedlin, N-terminal conserved region
Sybindin	PF04099	22 - 134	2.1e-07	Sybindin-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20930
fragaria_vesca	FvH4_2g15500 FvH4_2g15500
malus_domestica	MD05G1123300.v1.1 MD10G1126300.v1.1
prunus_persica	Prupe.8G167200_v2.0.a1
pyrus_communis	pycom10g10850
rosa_chinensis	RchiOBHm_Chr6g0278501
rosa_laevigata	RLG00000013223
rosa_multiflora	Rmu_sc0000258.1_g000008 Rmu_sc0002777.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189840 Rroxscaffold_7G00190330
rosa_rugosa	Rorug06G0117500
rosa_samantha	Rh4AG039800 Rh4BG034500 Rh6AG226600 Rh6BG230800 Rh6CG233900 Rh6DG225200
rosa_wichuraiana	Rw0G003070 Rw6G019780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	381
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	280
AfaI	GTAC	2 cut(s)	154, 410
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	349
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	57, 85
AluI	AGCT	2 cut(s)	57, 85
Alw26I	GTCTC	2 cut(s)	267, 334
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	267, 334
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	3 cut(s)	55, 64, 313
BpuEI	CTTGAG	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	231, 349
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	231, 349
BseGI	GGATG	2 cut(s)	70, 271
BseMI	GCAATG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	367
BsiWI	CGTACG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	332
BsmAI	GTCTC	2 cut(s)	267, 334
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	3, 404
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	231, 349
BssMI	GATC	2 cut(s)	3, 404
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	196, 388, 413
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	70, 271
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	2 cut(s)	6, 407
BstMAI	GTCTC	2 cut(s)	267, 334
BstMBI	GATC	2 cut(s)	3, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	70, 271
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	153, 409
CviAII	CATG	2 cut(s)	308, 344
CviJI	RGCY	5 cut(s)	27, 57, 85, 170, 180
CviKI_1	RGCY	5 cut(s)	27, 57, 85, 170, 180
CviQI	GTAC	2 cut(s)	153, 409
DpnI	GATC	2 cut(s)	5, 406
DpnII	GATC	2 cut(s)	3, 404
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	311, 347
FaiI	YATR	5 cut(s)	50, 213, 245, 309, 345
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	307, 343
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	2 cut(s)	77, 278
Fsp4HI	GCNGC	1 cut(s)	312
FspI	TGCGCA	1 cut(s)	381
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	27
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	311, 347
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HindIII	AAGCTT	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	133, 199
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	298, 369
Hpy8I	GTNNAC	2 cut(s)	133, 199
Hpy99I	CGWCG	3 cut(s)	17, 23, 26
HpyCH4III	ACNGT	3 cut(s)	196, 388, 413
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	311, 347
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	3, 404
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	90, 110
LpnPI	CCDG	5 cut(s)	44, 135, 283, 336, 363
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	3 cut(s)	55, 64, 313
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	215, 250
MalI	GATC	2 cut(s)	5, 406
MboI	GATC	2 cut(s)	3, 404
MboII	GAAGA	2 cut(s)	134, 286
MluCI	AATT	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	2 cut(s)	160, 376
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	2 cut(s)	3, 404
NlaIII	CATG	2 cut(s)	311, 347
NmuCI	GTSAC	1 cut(s)	250
NsbI	TGCGCA	1 cut(s)	381
OliI	CACNNNNGTG	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	117
Pfl23II	CGTACG	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspLI	CGTACG	1 cut(s)	408
RsaI	GTAC	2 cut(s)	154, 410
RsaNI	GTAC	2 cut(s)	153, 409
RseI	CAYNNNNRTG	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	3, 404
ScrFI	CCNGG	1 cut(s)	351
SetI	ASST	6 cut(s)	59, 87, 237, 321, 368, 377
SfaNI	GCATC	3 cut(s)	55, 64, 313
Sfr274I	CTCGAG	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	2 cut(s)	80, 367
SmoI	CTYRAG	2 cut(s)	80, 367
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	196, 388, 413
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	120, 368
TasI	AATT	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	89, 332
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.