Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009165

Physical Location & Seq

Genomic Coordinates Forward (+)

24584210 .. 24586384

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1123300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATCGTCTGCGTTGCCGTCGTCGGCCACCAGAACAACCCACTTTACATTCAAAGCTTCACCGACGCCGATGACGCCCTCAAGCTCCACCACATCGTCCACTGCTCCCTCGACGTCGTCGACGAGCGAGTGAACAATCCGAAAAAGTCCGGGCCAACATTGAATGAGACATTCTTGGGTCTGCTGTATCCAACTGAGAATTACAAAGTGTACGGCTATTTGACTAATACAAAAGTGAAGTTTATCTTGGTAACTACTGATCTTGATGTCAAAGATGCCGATGTTAGAAATTTTTTCAGGAGATTCCATGCCGCTTATGTGGATGCAATTTCAAACCCGTTTCATGAGCCAGGTAAAAAGATAACCTCAAAAACCTTTGCAGAAAGGGTGAGCACAATCGTCAAGTCATTTGGCATGAGTTCAACCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sedlin_N

Protein Analysis

144

Amino Acids

16.05

Weight (kDa)

7.8

Isoelectric Point (pI)

16.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sedlin_N	PF04628	7 - 135	5.4e-38	Sedlin, N-terminal conserved region
Sybindin	PF04099	24 - 136	2.1e-08	Sybindin-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20930
fragaria_vesca	FvH4_2g15500 FvH4_2g15500
malus_domestica	MD05G1123300.v1.1 MD10G1126300.v1.1
prunus_persica	Prupe.8G167200_v2.0.a1
pyrus_communis	pycom10g10850
rosa_chinensis	RchiOBHm_Chr6g0278501
rosa_laevigata	RLG00000013223
rosa_multiflora	Rmu_sc0000258.1_g000008 Rmu_sc0002777.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189840 Rroxscaffold_7G00190330
rosa_rugosa	Rorug06G0117500
rosa_samantha	Rh4AG039800 Rh4BG034500 Rh6AG226600 Rh6BG230800 Rh6CG233900 Rh6DG225200
rosa_wichuraiana	Rw0G003070 Rw6G019780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	289
AcyI	GRCGYC	3 cut(s)	66, 75, 114
AfaI	GTAC	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	53, 163, 333, 423
AjnI	CCWGG	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	2 cut(s)	57, 85
AluI	AGCT	2 cut(s)	57, 85
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	25, 152
ApoI	RAATTY	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	152
AsuC2I	CCSGG	2 cut(s)	151, 427
AsuHPI	GGTGA	2 cut(s)	52, 400
Bbv12I	GWGCWC	1 cut(s)	395
BceAI	ACGGC	2 cut(s)	2, 229
BciT130I	CCWGG	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	198
BcnI	CCSGG	2 cut(s)	151, 427
BcoDI	GTCTC	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	3 cut(s)	151, 351, 427
BmgT120I	GGNCC	1 cut(s)	152
BmrFI	CCNGG	3 cut(s)	151, 351, 427
BmsI	GCATC	2 cut(s)	265, 313
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	151, 427
BsaHI	GRCGYC	3 cut(s)	66, 75, 114
BseBI	CCWGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	27, 154
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	150, 426
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	27, 154
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	3, 259
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	2 cut(s)	27, 154
BspCNI	CTCAG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	343
BssMI	GATC	2 cut(s)	3, 259
BssNI	GRCGYC	3 cut(s)	66, 75, 114
Bst2UI	CCWGG	1 cut(s)	351
BstACI	GRCGYC	3 cut(s)	66, 75, 114
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	2 cut(s)	6, 262
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	3, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	3 cut(s)	149, 349, 425
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	27, 154
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	2 cut(s)	74, 83
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	3 cut(s)	308, 344, 415
CviJI	RGCY	6 cut(s)	27, 57, 85, 154, 216, 349
CviKI_1	RGCY	6 cut(s)	27, 57, 85, 154, 216, 349
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	5, 261
DpnII	GATC	2 cut(s)	3, 259
EaeI	YGGCCR	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	349
FaeI	CATG	3 cut(s)	311, 347, 418
FaiI	YATR	4 cut(s)	309, 318, 345, 416
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	3 cut(s)	307, 343, 414
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	27, 154
HapII	CCGG	2 cut(s)	150, 426
HgaI	GACGC	2 cut(s)	74, 83
Hin1I	GRCGYC	3 cut(s)	66, 75, 114
Hin1II	CATG	3 cut(s)	311, 347, 418
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	1 cut(s)	303
HpaII	CCGG	2 cut(s)	150, 426
HphI	GGTGA	2 cut(s)	52, 400
Hpy166II	GTNNAC	4 cut(s)	100, 121, 133, 211
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	3 cut(s)	263, 298, 344
Hpy8I	GTNNAC	4 cut(s)	100, 121, 133, 211
Hpy99I	CGWCG	7 cut(s)	23, 26, 68, 116, 119, 122, 125
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	326, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	3 cut(s)	66, 75, 114
Hsp92II	CATG	3 cut(s)	311, 347, 418
Kzo9I	GATC	2 cut(s)	3, 259
LmnI	GCTCC	2 cut(s)	90, 110
LpnPI	CCDG	5 cut(s)	44, 163, 283, 336, 363
LweI	GCATC	2 cut(s)	265, 313
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	2 cut(s)	5, 261
MboI	GATC	2 cut(s)	3, 259
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	3 cut(s)	199, 289, 327
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	3 cut(s)	89, 119, 376
MspI	CCGG	2 cut(s)	150, 426
MspR9I	CCNGG	3 cut(s)	151, 351, 427
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	2 cut(s)	151, 427
NdeII	GATC	2 cut(s)	3, 259
NlaIII	CATG	3 cut(s)	311, 347, 418
PagI	TCATGA	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 120
PfeI	GAWTC	1 cut(s)	303
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	116
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	119
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	3, 259
Sau96I	GGNCC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	151, 351, 427
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	6 cut(s)	59, 87, 117, 355, 368, 377
SfaNI	GCATC	2 cut(s)	265, 313
SgrDI	CGTCGACG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	199, 289, 327
SsiI	CCGC	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	149, 349, 425
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	111, 120
TasI	AATT	3 cut(s)	199, 289, 327
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	303
TscAI	CASTG	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	107
Tth111I	GACNNNGTC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.