Rroxscaffold_7G00189840

Trafficking protein particle complex subunit 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009165
Physical Location & Seq
Reverse (-)
29665447 .. 29667596
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189840.1

Sequence Viewer

Length: 363 bp
ATGATCGTCTGCGTCGCCGTCGTCGGGCATCAGAACAACCCTCTTTACATCCAGAGCTTCACTGATGCTGATGACGCCCTCAAGCTCCACCACATCGTCCACTGCTCCCTCGACGTCGTCGACGAGCGAGTGAACAATCCGAAGAAGTCCGGACCGACACTGAATGAGACATTCTTGGGTCTGCTTTATCCAACCGAAAATTACAAAGTGTATGGCTATTTGACAAACACGAAGGTCAAGTTTATCTTGGTGACTACTGATCTTGATGTTAAAGATGCAGATGTCAGAAATTTTTTCAGGCGATTCCATGCTGGGTATGTGGATGCAATTTCAAACCCATTCCATGAGCCAGGAAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

120

Amino Acids

13.65

Weight (kDa)

6.57

Isoelectric Point (pI)

16.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 7 - 119 1.5e-31 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 149
AcsI RAATTY 1 cut(s) 289
AcyI GRCGYC 2 cut(s) 75, 114
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 1 cut(s) 333
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 2 cut(s) 57, 85
AluI AGCT 2 cut(s) 57, 85
Alw26I GTCTC 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 149
ApoI RAATTY 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 4 cut(s) 37, 55, 265, 313
BpuEI CTTGAG 1 cut(s) 65
BsaHI GRCGYC 2 cut(s) 75, 114
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 149
BseBI CCWGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 48, 328
BseLI CCNNNNNNNGG 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 149
Bsp143I GATC 2 cut(s) 3, 259
BspEI TCCGGA 1 cut(s) 149
BssMI GATC 2 cut(s) 3, 259
BssNI GRCGYC 2 cut(s) 75, 114
Bst2UI CCWGG 1 cut(s) 351
BstACI GRCGYC 2 cut(s) 75, 114
BstF5I GGATG 2 cut(s) 48, 328
BstKTI GATC 2 cut(s) 6, 262
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 3, 259
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BtsCI GGATG 2 cut(s) 48, 328
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 3 cut(s) 60, 100, 158
Cfr13I GGNCC 1 cut(s) 152
CpoI CGGWCCG 1 cut(s) 152
CseI GACGC 1 cut(s) 83
CspI CGGWCCG 1 cut(s) 152
CviAII CATG 2 cut(s) 308, 344
CviJI RGCY 4 cut(s) 57, 85, 216, 349
CviKI_1 RGCY 4 cut(s) 57, 85, 216, 349
DpnI GATC 2 cut(s) 5, 261
DpnII GATC 2 cut(s) 3, 259
Eco47I GGWCC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 349
FaeI CATG 2 cut(s) 311, 347
FaiI YATR 4 cut(s) 213, 309, 318, 345
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FatI CATG 2 cut(s) 307, 343
FblI GTMKAC 1 cut(s) 120
FokI GGATG 2 cut(s) 35, 335
GsaI CCCAGC 1 cut(s) 315
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 2 cut(s) 75, 114
Hin1II CATG 2 cut(s) 311, 347
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 303
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 3 cut(s) 100, 121, 133
Hpy188I TCNGA 3 cut(s) 33, 141, 287
Hpy188III TCNNGA 3 cut(s) 52, 150, 263
Hpy8I GTNNAC 3 cut(s) 100, 121, 133
Hpy99I CGWCG 7 cut(s) 17, 23, 26, 116, 119, 122, 125
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 278, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 2 cut(s) 75, 114
Hsp92II CATG 2 cut(s) 311, 347
Kpn2I TCCGGA 1 cut(s) 149
Kzo9I GATC 2 cut(s) 3, 259
LmnI GCTCC 2 cut(s) 90, 110
LpnPI CCDG 5 cut(s) 65, 163, 283, 297, 336
LweI GCATC 4 cut(s) 37, 55, 265, 313
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 250
MalI GATC 2 cut(s) 5, 261
MboI GATC 2 cut(s) 3, 259
MboII GAAGA 1 cut(s) 154
MluCI AATT 3 cut(s) 199, 289, 327
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 3 cut(s) 51, 89, 119
MroI TCCGGA 1 cut(s) 149
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 2 cut(s) 3, 259
NlaIII CATG 2 cut(s) 311, 347
NmuCI GTSAC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 120
PfeI GAWTC 1 cut(s) 303
PflFI GACNNNGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 349
PspPI GGNCC 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 116
Rsr2I CGGWCCG 1 cut(s) 152
RsrII CGGWCCG 1 cut(s) 152
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 2 cut(s) 3, 259
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 351
SetI ASST 4 cut(s) 59, 87, 117, 237
SfaNI GCATC 4 cut(s) 37, 55, 265, 313
SgrDI CGTCGACG 1 cut(s) 119
SinI GGWCC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 3 cut(s) 199, 289, 327
StyD4I CCNGG 1 cut(s) 349
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 111, 120
TaqII GACCGA 1 cut(s) 169
TasI AATT 3 cut(s) 199, 289, 327
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 3 cut(s) 67, 107, 165
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspRI CASTG 3 cut(s) 67, 107, 165
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 120
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.