Rh6BG230800

Trafficking protein particle complex subunit 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009165
Physical Location & Seq
Forward (+)
43542335 .. 43544906
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG230800.1

Sequence Viewer

Length: 360 bp
ATGATCGTCTGCGTCGCCGTCGTCGGGCATCAGAACAACCCTCTTTACATCCAAAGCTTCACTGATGCCGATGACGCCCTCAAGCTCCACCACATCGTCCACTGCTCCCTCGACGTCGTCGACGAGCGAGTGAACAATCCGAAGAAGTCCGGACCGACGCTGAATGAGACATTCTTGGGTCTGCTTTATCCAACCGAGAATTACAAAGTGTATGGCTATTTGACAAACACAAAGGTGAAGTTTATCTTGGTGACTACTGATCTCGATGTTAAAGATGCAGATGTCAGAAATGTGAGTTGTTTTGCTCTTCATTTGATGTTATCGTTACTAAAGAATTCAGTGTGTGAAAATGTAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

119

Amino Acids

13.34

Weight (kDa)

5.88

Isoelectric Point (pI)

11.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 7 - 100 2.9e-22 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 149
AcsI RAATTY 1 cut(s) 334
AcyI GRCGYC 2 cut(s) 75, 114
AfiI CCNNNNNNNGG 1 cut(s) 24
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 2 cut(s) 57, 85
AluI AGCT 2 cut(s) 57, 85
Alw26I GTCTC 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 149
ApoI RAATTY 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 247, 262
AvaII GGWCC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 2
BcoDI GTCTC 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmsI GCATC 3 cut(s) 37, 55, 265
BpuEI CTTGAG 1 cut(s) 65
BsaHI GRCGYC 2 cut(s) 75, 114
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 149
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 149
Bsp143I GATC 2 cut(s) 3, 259
BspEI TCCGGA 1 cut(s) 149
BspQI GCTCTTC 1 cut(s) 312
BssMI GATC 2 cut(s) 3, 259
BssNI GRCGYC 2 cut(s) 75, 114
Bst6I CTCTTC 1 cut(s) 312
BstACI GRCGYC 2 cut(s) 75, 114
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 2 cut(s) 6, 262
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 3, 259
BstMWI GCNNNNNNNGC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 3 cut(s) 60, 100, 345
Cfr13I GGNCC 1 cut(s) 152
CpoI CGGWCCG 1 cut(s) 152
CseI GACGC 2 cut(s) 83, 166
CspI CGGWCCG 1 cut(s) 152
CviJI RGCY 3 cut(s) 57, 85, 216
CviKI_1 RGCY 3 cut(s) 57, 85, 216
DpnI GATC 2 cut(s) 5, 261
DpnII GATC 2 cut(s) 3, 259
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 334
FaiI YATR 1 cut(s) 213
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FblI GTMKAC 1 cut(s) 120
FokI GGATG 1 cut(s) 35
HapII CCGG 1 cut(s) 150
HgaI GACGC 2 cut(s) 83, 166
Hin1I GRCGYC 2 cut(s) 75, 114
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 55
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 247, 262
Hpy166II GTNNAC 4 cut(s) 100, 121, 133, 355
Hpy188I TCNGA 3 cut(s) 33, 141, 287
Hpy188III TCNNGA 2 cut(s) 150, 263
Hpy8I GTNNAC 4 cut(s) 100, 121, 133, 355
Hpy99I CGWCG 8 cut(s) 17, 23, 26, 116, 119, 122, 125, 160
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 2 cut(s) 75, 114
Kpn2I TCCGGA 1 cut(s) 149
Kzo9I GATC 2 cut(s) 3, 259
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 90, 110
LpnPI CCDG 1 cut(s) 163
LweI GCATC 3 cut(s) 37, 55, 265
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 250, 324
MalI GATC 2 cut(s) 5, 261
MboI GATC 2 cut(s) 3, 259
MboII GAAGA 2 cut(s) 154, 299
MluCI AATT 2 cut(s) 199, 334
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 3 cut(s) 51, 89, 119
MroI TCCGGA 1 cut(s) 149
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 2 cut(s) 3, 259
NmuCI GTSAC 1 cut(s) 250
OliI CACNNNNGTG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 120
PflFI GACNNNGTC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 233
Rsr2I CGGWCCG 1 cut(s) 152
RsrII CGGWCCG 1 cut(s) 152
SalI GTCGAC 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 2 cut(s) 3, 259
Sau96I GGNCC 1 cut(s) 152
SetI ASST 4 cut(s) 59, 87, 117, 237
SfaNI GCATC 3 cut(s) 37, 55, 265
SgrDI CGTCGACG 1 cut(s) 119
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 2 cut(s) 199, 334
TaiI ACGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 111, 120, 264
TaqII GACCGA 1 cut(s) 169
TasI AATT 2 cut(s) 199, 334
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 3 cut(s) 67, 107, 345
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 299
TspRI CASTG 3 cut(s) 67, 107, 345
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 120
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.