Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009165

Physical Location & Seq

Genomic Coordinates Forward (+)

20625398 .. 20627624

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1126300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCACTTTACATTCAAAGCTTCACCGACGCCGATGACGCGCTCAAGCTCCACCACATCGTCCACTGCTCCCTCGACGTCGTCGACGAGCGAGTGAACAATCCGAAAAAGTCTGCACCGACATTGAATGAGACATTCTTGGGTTTGCTTTATCCAACTGAGAATTACAAAGTTTATGGCTATTTGACTAATACTAAAGTGAAGTTTATCTTGGTAACTACCGATCTTGATGTCAAGGACGCAGATGTTAAAAATTTTTTCAGGAGATTCCATGCTGCTTATGTGGATGCAATTTCAAACCCGTTTCATGAGCCAGGCAAAAAGATAACCTCAAAAACATTTGCAGAAAGGGTAAGCACAATCGTCAAGTCATTTGGCATGAGTTCAACCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sedlin_N

Protein Analysis

144

Amino Acids

16.04

Weight (kDa)

7.8

Isoelectric Point (pI)

17.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sedlin_N	PF04628	7 - 135	6.1e-38	Sedlin, N-terminal conserved region
Sybindin	PF04099	24 - 136	1.4e-08	Sybindin-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20930
fragaria_vesca	FvH4_2g15500 FvH4_2g15500
malus_domestica	MD05G1123300.v1.1 MD10G1126300.v1.1
prunus_persica	Prupe.8G167200_v2.0.a1
pyrus_communis	pycom10g10850
rosa_chinensis	RchiOBHm_Chr6g0278501
rosa_laevigata	RLG00000013223
rosa_multiflora	Rmu_sc0000258.1_g000008 Rmu_sc0002777.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189840 Rroxscaffold_7G00190330
rosa_rugosa	Rorug06G0117500
rosa_samantha	Rh4AG039800 Rh4BG034500 Rh6AG226600 Rh6BG230800 Rh6CG233900 Rh6DG225200
rosa_wichuraiana	Rw0G003070 Rw6G019780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	289
AcyI	GRCGYC	2 cut(s)	66, 114
AgsI	TTSAA	4 cut(s)	53, 163, 333, 423
AjnI	CCWGG	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	2 cut(s)	57, 85
AluI	AGCT	2 cut(s)	57, 85
Alw26I	GTCTC	1 cut(s)	161
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	351, 427
BmrFI	CCNGG	2 cut(s)	351, 427
BmsI	GCATC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	427
BsaHI	GRCGYC	2 cut(s)	66, 114
BseBI	CCWGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	426
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	3, 259
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	343
BssMI	GATC	2 cut(s)	3, 259
BssNI	GRCGYC	2 cut(s)	66, 114
Bst2UI	CCWGG	1 cut(s)	351
BstACI	GRCGYC	2 cut(s)	66, 114
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	2 cut(s)	6, 262
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	3, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	349, 425
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	79
CseI	GACGC	3 cut(s)	74, 83, 284
CviAII	CATG	3 cut(s)	308, 344, 415
CviJI	RGCY	5 cut(s)	27, 57, 85, 216, 349
CviKI_1	RGCY	5 cut(s)	27, 57, 85, 216, 349
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	5, 261
DpnII	GATC	2 cut(s)	3, 259
EaeI	YGGCCR	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	349
FaeI	CATG	3 cut(s)	311, 347, 418
FaiI	YATR	5 cut(s)	213, 309, 318, 345, 416
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	3 cut(s)	307, 343, 414
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	312
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	426
HgaI	GACGC	3 cut(s)	74, 83, 284
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	2 cut(s)	66, 114
Hin1II	CATG	3 cut(s)	311, 347, 418
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	1 cut(s)	303
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	100, 121, 133
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	3 cut(s)	263, 298, 344
Hpy8I	GTNNAC	3 cut(s)	100, 121, 133
Hpy99I	CGWCG	8 cut(s)	17, 23, 26, 68, 116, 119, 122, 125
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	152, 326, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	2 cut(s)	66, 114
Hsp92II	CATG	3 cut(s)	311, 347, 418
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	3, 259
LmnI	GCTCC	2 cut(s)	90, 110
LpnPI	CCDG	4 cut(s)	44, 283, 336, 363
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	313
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	2 cut(s)	5, 261
MboI	GATC	2 cut(s)	3, 259
MluCI	AATT	3 cut(s)	199, 289, 327
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	2 cut(s)	119, 376
MseI	TTAA	1 cut(s)	285
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	351, 427
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	1 cut(s)	427
NdeII	GATC	2 cut(s)	3, 259
NlaIII	CATG	3 cut(s)	311, 347, 418
PagI	TCATGA	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 120
PfeI	GAWTC	1 cut(s)	303
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	3, 259
ScrFI	CCNGG	2 cut(s)	351, 427
SetI	ASST	4 cut(s)	59, 87, 117, 368
SfaNI	GCATC	1 cut(s)	313
SgrDI	CGTCGACG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	199, 289, 327
StyD4I	CCNGG	2 cut(s)	349, 425
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	111, 120
TasI	AATT	3 cut(s)	199, 289, 327
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	107
Tth111I	GACNNNGTC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.