Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Forward (+)

9107546 .. 9110275

Gene Structure 2730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTTTTTCGATGGATACCATTATCATGGAACAACCTTTGAGCAGAGTTACCGGTGTTATCCGGCATCTTTTATCGACAAGCCACAACTTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATCGTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGCTTCGTAATGCTGGAATTGAACGTGTTACACACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAGGCATGATTTACATGCCATATTGGATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATTCATGCCTAACTAGTGGGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATAGATATAGTTGAAACAAAGCCTGCTAACGCAATCAGCATCATAGAAACAGACTGTGAGGTTGATTTCGCACCTCCCCTCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAGCTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCTTTCACCGGATCTGGAAGACGGTTAGATGGGAGACCTCTTGCCTATGAGCCAGCGCCAGCCTCTAGCTCAAAAGGCAAACAACCTGTTGTCGCTAATGGTAATGGACAGTCATCTGTAGCAAGTAGCTCAGAGAAAGCTACACGAGCTCAGGGAAAGCTTGTATTTGGGGCTAACGGAAACCGTGCTCCAAAAGAAGCTGCTCCGAAAGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAGAAGAAAGACGAGCCCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

319

Amino Acids

35.32

Weight (kDa)

6.27

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	13 - 108	4.8e-41	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	109 - 184	9.9e-38	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AclWI	GGATC	1 cut(s)	670
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	659, 863
AflIII	ACRYGT	1 cut(s)	196
AgeI	ACCGGT	1 cut(s)	51
AgsI	TTSAA	5 cut(s)	92, 194, 488, 649, 923
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
Alw21I	GWGCWC	2 cut(s)	802, 841
Alw26I	GTCTC	4 cut(s)	285, 392, 679, 872
AlwI	GGATC	1 cut(s)	670
AlwNI	CAGNNNCTG	1 cut(s)	274
ApeKI	GCWGC	5 cut(s)	277, 280, 593, 851, 869
AsiGI	ACCGGT	1 cut(s)	51
Asp700I	GAANNNNTTC	2 cut(s)	415, 470
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	2 cut(s)	110, 649
AvaII	GGWCC	1 cut(s)	602
BanII	GRGCYC	2 cut(s)	802, 915
BauI	CACGAG	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	676
Bbv12I	GWGCWC	2 cut(s)	802, 841
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	5 cut(s)	264, 267, 605, 838, 856
BccI	CCATC	4 cut(s)	5, 127, 398, 674
BciT130I	CCWGG	1 cut(s)	368
BciVI	GTATCC	1 cut(s)	8
BcoDI	GTCTC	4 cut(s)	285, 392, 679, 872
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	3 cut(s)	137, 429, 717
BfmI	CTRYAG	3 cut(s)	344, 591, 768
BfoI	RGCGCY	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	8
BisI	GCNGC	5 cut(s)	278, 281, 594, 852, 870
BlsI	GCNGC	5 cut(s)	279, 282, 595, 853, 871
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	3 cut(s)	450, 567, 603
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	4 cut(s)	74, 153, 255, 522
BpiI	GAAGAC	1 cut(s)	676
Bpu10I	CCTNAGC	3 cut(s)	597, 615, 801
BpuEI	CTTGAG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	679
BsaWI	WCCGGW	2 cut(s)	51, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 863
Bse118I	RCCGGY	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	368
BseGI	GGATG	2 cut(s)	267, 634
BseLI	CCNNNNNNNGG	2 cut(s)	659, 863
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	606, 795, 815
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	5 cut(s)	264, 267, 605, 838, 856
BshTI	ACCGGT	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	802, 841
BsiSI	CCGG	4 cut(s)	52, 62, 605, 660
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	2 cut(s)	659, 863
BsmAI	GTCTC	4 cut(s)	285, 392, 679, 872
BsmFI	GGGAC	1 cut(s)	561
Bso31I	GGTCTC	1 cut(s)	679
Bsp1286I	GDGCHC	3 cut(s)	802, 841, 915
Bsp143I	GATC	2 cut(s)	130, 662
BspCNI	CTCAG	3 cut(s)	607, 794, 814
BspLI	GGNNCC	3 cut(s)	450, 567, 603
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	670
BspTNI	GGTCTC	1 cut(s)	679
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	51
BssMI	GATC	2 cut(s)	130, 662
BssSI	CACGAG	1 cut(s)	795
Bst2BI	CACGAG	1 cut(s)	795
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	5 cut(s)	209, 530, 675, 762, 836
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	2 cut(s)	274, 590
BstC8I	GCNNGC	3 cut(s)	498, 705, 711
BstDEI	CTNAG	4 cut(s)	597, 615, 781, 801
BstF5I	GGATG	2 cut(s)	267, 634
BstH2I	RGCGCY	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	2 cut(s)	133, 665
BstMAI	GTCTC	4 cut(s)	285, 392, 679, 872
BstMBI	GATC	2 cut(s)	130, 662
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 274, 590, 726, 797
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	3 cut(s)	344, 591, 768
BstV1I	GCAGC	5 cut(s)	264, 267, 605, 838, 856
BstV2I	GAAGAC	1 cut(s)	676
BstX2I	RGATCY	1 cut(s)	662
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	662
BsuI	GTATCC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	267, 634
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	498, 705, 711
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	709
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	469
CspAI	ACCGGT	1 cut(s)	51
CviAII	CATG	4 cut(s)	26, 241, 250, 420
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	4 cut(s)	597, 615, 781, 801
DpnI	GATC	2 cut(s)	132, 664
DpnII	GATC	2 cut(s)	130, 662
DraIII	CACNNNGTG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	800
Eco24I	GRGCYC	2 cut(s)	802, 915
Eco31I	GGTCTC	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	602
Eco53kI	GAGCTC	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	366
EcoT38I	GRGCYC	2 cut(s)	802, 915
FaeI	CATG	4 cut(s)	29, 244, 253, 423
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	4 cut(s)	25, 240, 249, 419
Fnu4HI	GCNGC	5 cut(s)	278, 281, 594, 852, 870
FokI	GGATG	2 cut(s)	274, 641
FriOI	GRGCYC	2 cut(s)	802, 915
Fsp4HI	GCNGC	5 cut(s)	278, 281, 594, 852, 870
FspBI	CTAG	3 cut(s)	137, 429, 717
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	5 cut(s)	278, 281, 594, 852, 870
HaeII	RGCGCY	1 cut(s)	710
HapII	CCGG	4 cut(s)	52, 62, 605, 660
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	4 cut(s)	29, 244, 253, 423
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HindIII	AAGCTT	2 cut(s)	809, 924
HinfI	GANTC	2 cut(s)	213, 271
HpaII	CCGG	4 cut(s)	52, 62, 605, 660
HphI	GGTGA	2 cut(s)	110, 649
Hpy188I	TCNGA	3 cut(s)	162, 784, 858
Hpy188III	TCNNGA	1 cut(s)	666
HpyAV	CCTTC	3 cut(s)	230, 281, 597
HpyCH4III	ACNGT	5 cut(s)	209, 530, 675, 762, 836
HpyCH4IV	ACGT	3 cut(s)	196, 336, 574
HpyCH4V	TGCA	6 cut(s)	148, 230, 268, 283, 593, 872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 274, 590, 726, 797
HpyF3I	CTNAG	4 cut(s)	597, 615, 781, 801
HpySE526I	ACGT	3 cut(s)	196, 336, 574
Hsp92II	CATG	4 cut(s)	29, 244, 253, 423
HspAI	GCGC	1 cut(s)	707
Kzo9I	GATC	2 cut(s)	130, 662
LmnI	GCTCC	4 cut(s)	565, 844, 859, 866
Lsp1109I	GCAGC	5 cut(s)	264, 267, 605, 838, 856
LweI	GCATC	4 cut(s)	74, 153, 255, 522
MaeI	CTAG	3 cut(s)	137, 429, 717
MaeII	ACGT	3 cut(s)	196, 336, 574
MaeIII	GTNAC	4 cut(s)	47, 98, 199, 313
MalI	GATC	2 cut(s)	132, 664
MboI	GATC	2 cut(s)	130, 662
MboII	GAAGA	5 cut(s)	245, 311, 681, 913, 949
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	3 cut(s)	802, 841, 915
MluCI	AATT	2 cut(s)	189, 412
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	2 cut(s)	402, 844
MroXI	GAANNNNTTC	2 cut(s)	415, 470
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	4 cut(s)	52, 62, 605, 660
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	5 cut(s)	172, 274, 590, 726, 797
NdeII	GATC	2 cut(s)	130, 662
NlaIII	CATG	4 cut(s)	29, 244, 253, 423
NlaIV	GGNNCC	3 cut(s)	450, 567, 603
NmuCI	GTSAC	2 cut(s)	98, 313
NspI	RCATGY	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	415, 470
PfeI	GAWTC	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	366
PinAI	ACCGGT	1 cut(s)	51
PkrI	GCNGC	5 cut(s)	279, 282, 595, 853, 871
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	802
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	450, 567, 603
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	662
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	802
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	5 cut(s)	278, 281, 594, 852, 870
Sau3AI	GATC	2 cut(s)	130, 662
Sau96I	GGNCC	1 cut(s)	602
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	3 cut(s)	802, 841, 915
SfaNI	GCATC	4 cut(s)	74, 153, 255, 522
SfcI	CTRYAG	3 cut(s)	344, 591, 768
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	2 cut(s)	189, 412
SspMI	CTAG	3 cut(s)	137, 429, 717
SstI	GAGCTC	1 cut(s)	802
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	5 cut(s)	209, 530, 675, 762, 836
TaiI	ACGT	3 cut(s)	199, 339, 577
TaqI	TCGA	3 cut(s)	9, 75, 555
TasI	AATT	2 cut(s)	189, 412
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	2 cut(s)	98, 313
TseI	GCWGC	5 cut(s)	277, 280, 593, 851, 869
Tsp45I	GTSAC	2 cut(s)	98, 313
TspDTI	ATGAA	5 cut(s)	214, 408, 463, 645, 936
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	602
XceI	RCATGY	1 cut(s)	253
XmnI	GAANNNNTTC	2 cut(s)	415, 470
XspI	CTAG	3 cut(s)	137, 429, 717
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.