Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Reverse (-)

21607485 .. 21614633

Gene Structure 7149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG149400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTGCAGTATTTTGATGGATATGGGTATCATGGGACGTCATTCGAGCAGACATATCGATGTTATCCTGCATCATTTATTGAAAAGCCGCAACTTGAAAGTGGTGATAAAATTATAATGCCTCCCTCAGCCCTTGACCGCCTTGCATCGCTACACATTGATTATCCAATGTTGTTTGAGCTTCGTAATGACGCTGCTGAGCGGGTCTCTCATTGTGGGGTGTTGGAGTTCATCGCAGAAGAAGGCATGATCTACATGCCTTATTGGATGATGGAGAATATGCTCTTGCAAGAGGGGGACATTGTGCGACTGAAAAATGTGACTCTTCCAAAGGGAACATATGTTAAACTTCAACCCCATACAAAGGACTTTTTAGACATCTCAAATCCAAAAGCCATCTTGGAGACGACACTAAGGAATTTTTCCTGCTTGACCATTGGGGATAGTATTATGGTAGCATACAACAACAAGAAGTATTATATAGATATCATTGAATCAAAGCCTTCTAATGCAATAAGTATAATTGAGACAGACTGTGAGGTGGACTTTGCACCTCCTCTTGATTACAAGGAACCTGAAAGGCCTGTGGCACCTGTTCCTCTTAACAAGGCAACAGCTCAAGTTGAAGAGGACCCTGCTGCGACTGAACCAAAATTCAACCCTTTTACTGGAGCTGGAAGGCGCTTGGATGGTAAGCCTTTGAAGTATGAGCCAGCATCAGCTTCCTCATCAGGGTCCAAAGACAAGAAACCTGTGGCCACCAATGGAACTGCACCACCTTCTGCAGGATCTAGTTCACAAACTGCCAATCGTCAGGCTCAGGGAAAGCTTGTTTTTGGAGCAAATGCCAGCCGTATTCCAAAGGAGACACCAAAGAAGGAAGCTACAAAAGACGCTAAACAAGAGCAGCAACCTGAAAAGAAAGAAGATCCCAAGTTCCAGCCATTTACCGGGAAAAAGTACTCGCTTAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

325

Amino Acids

36.22

Weight (kDa)

6.18

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	15 - 110	7.3e-41	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	111 - 186	7.6e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AatII	GACGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	589
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	3 cut(s)	89, 139, 202
AclWI	GGATC	2 cut(s)	796, 923
AcoI	YGGCCR	1 cut(s)	756
AcsI	RAATTY	2 cut(s)	418, 653
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	962
AfiI	CCNNNNNNNGG	5 cut(s)	364, 668, 732, 785, 950
AgsI	TTSAA	7 cut(s)	83, 98, 353, 494, 626, 658, 703
AluBI	AGCT	6 cut(s)	181, 617, 674, 722, 829, 884
AluI	AGCT	6 cut(s)	181, 617, 674, 722, 829, 884
Alw26I	GTCTC	4 cut(s)	211, 398, 521, 860
AlwI	GGATC	2 cut(s)	796, 923
AoxI	GGCC	2 cut(s)	581, 756
ApeKI	GCWGC	3 cut(s)	194, 638, 907
ApoI	RAATTY	2 cut(s)	418, 653
AspLEI	GCGC	1 cut(s)	684
AspS9I	GGNCC	2 cut(s)	631, 735
AsuC2I	CCSGG	1 cut(s)	952
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	631, 735
BalI	TGGCCA	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	589
BbvCI	CCTCAGC	1 cut(s)	127
BbvI	GCAGC	3 cut(s)	181, 625, 919
BccI	CCATC	4 cut(s)	11, 265, 404, 683
BceAI	ACGGC	1 cut(s)	837
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BcnI	CCSGG	1 cut(s)	952
BcoDI	GTCTC	4 cut(s)	211, 398, 521, 860
BfaI	CTAG	1 cut(s)	792
BfmI	CTRYAG	1 cut(s)	783
BfoI	RGCGCY	1 cut(s)	685
BisI	GCNGC	4 cut(s)	89, 195, 639, 908
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	4 cut(s)	90, 196, 640, 909
BmcAI	AGTACT	1 cut(s)	962
Bme1390I	CCNGG	1 cut(s)	952
Bme18I	GGWCC	2 cut(s)	631, 735
BmgT120I	GGNCC	2 cut(s)	631, 735
BmiI	GGNNCC	4 cut(s)	573, 591, 633, 736
BmrFI	CCNGG	1 cut(s)	952
BmsI	GCATC	3 cut(s)	80, 155, 725
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	3 cut(s)	127, 819, 968
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	952
Bsa29I	ATCGAT	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	5 cut(s)	364, 668, 732, 785, 950
Bse1I	ACTGG	1 cut(s)	673
BseCI	ATCGAT	1 cut(s)	58
BseGI	GGATG	2 cut(s)	273, 694
BseLI	CCNNNNNNNGG	5 cut(s)	364, 668, 732, 785, 950
BseMII	CTCAG	3 cut(s)	141, 189, 833
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	3 cut(s)	181, 625, 919
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	2 cut(s)	583, 758
BshNI	GGYRCC	1 cut(s)	589
BshVI	ATCGAT	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	2 cut(s)	49, 311
BslI	CCNNNNNNNGG	5 cut(s)	364, 668, 732, 785, 950
BsmAI	GTCTC	4 cut(s)	211, 398, 521, 860
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	2 cut(s)	49, 311
BsnI	GGCC	2 cut(s)	583, 758
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	249, 788, 928
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	3 cut(s)	89, 139, 202
BspANI	GGCC	2 cut(s)	583, 758
BspCNI	CTCAG	3 cut(s)	140, 190, 832
BspDI	ATCGAT	1 cut(s)	58
BspLI	GGNNCC	4 cut(s)	573, 591, 633, 736
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	2 cut(s)	796, 923
BspT107I	GGYRCC	1 cut(s)	589
BspTNI	GGTCTC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	673
BssMI	GATC	3 cut(s)	249, 788, 928
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	2 cut(s)	330, 621
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	714, 850
BstDEI	CTNAG	5 cut(s)	127, 198, 413, 819, 968
BstENI	CCTNNNNNAGG	1 cut(s)	783
BstF5I	GGATG	2 cut(s)	273, 694
BstH2I	RGCGCY	1 cut(s)	685
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	3 cut(s)	252, 791, 931
BstMAI	GTCTC	4 cut(s)	211, 398, 521, 860
BstMBI	GATC	3 cut(s)	249, 788, 928
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	950
BstSFI	CTRYAG	1 cut(s)	783
BstV1I	GCAGC	3 cut(s)	181, 625, 919
BstX2I	RGATCY	2 cut(s)	788, 928
BstYI	RGATCY	2 cut(s)	788, 928
Bsu15I	ATCGAT	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	583, 758
BsuTUI	ATCGAT	1 cut(s)	58
BtgZI	GCGATG	2 cut(s)	132, 217
BtsCI	GGATG	2 cut(s)	273, 694
Cac8I	GCNNGC	2 cut(s)	714, 850
CfoI	GCGC	1 cut(s)	684
Cfr13I	GGNCC	2 cut(s)	631, 735
ClaI	ATCGAT	1 cut(s)	58
CseI	GACGC	2 cut(s)	200, 902
Csp6I	GTAC	1 cut(s)	961
CviAII	CATG	3 cut(s)	32, 247, 256
CviQI	GTAC	1 cut(s)	961
DdeI	CTNAG	5 cut(s)	127, 198, 413, 819, 968
DpnI	GATC	3 cut(s)	251, 790, 930
DpnII	GATC	3 cut(s)	249, 788, 928
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	2 cut(s)	330, 621
EarI	CTCTTC	2 cut(s)	330, 621
Eco147I	AGGCCT	1 cut(s)	583
Eco31I	GGTCTC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	631, 735
EcoNI	CCTNNNNNAGG	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	3 cut(s)	35, 250, 259
FaqI	GGGAC	2 cut(s)	49, 311
FatI	CATG	3 cut(s)	31, 246, 255
FauI	CCCGC	1 cut(s)	195
FauNDI	CATATG	1 cut(s)	340
Fnu4HI	GCNGC	4 cut(s)	89, 195, 639, 908
FokI	GGATG	2 cut(s)	280, 701
Fsp4HI	GCNGC	4 cut(s)	89, 195, 639, 908
FspBI	CTAG	1 cut(s)	792
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	4 cut(s)	89, 195, 639, 908
GsuI	CTGGAG	1 cut(s)	690
HaeII	RGCGCY	1 cut(s)	685
HaeIII	GGCC	2 cut(s)	583, 758
HapII	CCGG	1 cut(s)	951
HgaI	GACGC	2 cut(s)	200, 902
HhaI	GCGC	1 cut(s)	684
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	35, 250, 259
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	2 cut(s)	322, 494
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	544, 797
Hpy188III	TCNNGA	1 cut(s)	560
Hpy8I	GTNNAC	2 cut(s)	544, 797
HpyAV	CCTTC	5 cut(s)	236, 513, 672, 789, 871
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	8 cut(s)	7, 71, 146, 289, 512, 551, 773, 785
HpyF3I	CTNAG	5 cut(s)	127, 198, 413, 819, 968
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	35, 250, 259
HspAI	GCGC	1 cut(s)	682
Kzo9I	GATC	3 cut(s)	249, 788, 928
LmnI	GCTCC	2 cut(s)	671, 839
Lsp1109I	GCAGC	3 cut(s)	181, 625, 919
LweI	GCATC	3 cut(s)	80, 155, 725
MaeI	CTAG	1 cut(s)	792
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	251, 790, 930
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	3 cut(s)	249, 788, 928
MboII	GAAGA	4 cut(s)	251, 317, 638, 938
MflI	RGATCY	2 cut(s)	788, 928
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	4 cut(s)	111, 418, 522, 653
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	9 cut(s)	132, 136, 286, 532, 564, 567, 609, 622, 736
Mox20I	TGGCCA	1 cut(s)	758
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	2 cut(s)	345, 603
MslI	CAYNNNNRTG	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	758
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	1 cut(s)	952
NciI	CCSGG	1 cut(s)	952
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	3 cut(s)	249, 788, 928
NlaIII	CATG	3 cut(s)	35, 250, 259
NlaIV	GGNNCC	4 cut(s)	573, 591, 633, 736
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	583
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	4 cut(s)	90, 196, 640, 909
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	631
PsiI	TTATAA	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	631
PspN4I	GGNNCC	4 cut(s)	573, 591, 633, 736
PspPI	GGNCC	2 cut(s)	631, 735
PspPPI	RGGWCCY	1 cut(s)	631
PstI	CTGCAG	1 cut(s)	787
PsuI	RGATCY	2 cut(s)	788, 928
RsaI	GTAC	1 cut(s)	962
RsaNI	GTAC	1 cut(s)	961
RseI	CAYNNNNRTG	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	345, 603
SatI	GCNGC	4 cut(s)	89, 195, 639, 908
Sau3AI	GATC	3 cut(s)	249, 788, 928
Sau96I	GGNCC	2 cut(s)	631, 735
ScaI	AGTACT	1 cut(s)	962
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	952
SfaNI	GCATC	3 cut(s)	80, 155, 725
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	2 cut(s)	631, 735
SmiMI	CAYNNNNRTG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
Sse9I	AATT	4 cut(s)	111, 418, 522, 653
SseBI	AGGCCT	1 cut(s)	583
SsiI	CCGC	3 cut(s)	89, 139, 202
SspMI	CTAG	1 cut(s)	792
StuI	AGGCCT	1 cut(s)	583
StyD4I	CCNGG	1 cut(s)	950
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	45, 58
TasI	AATT	4 cut(s)	111, 418, 522, 653
TatI	WGTACW	1 cut(s)	960
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	2 cut(s)	345, 603
Tru9I	TTAA	2 cut(s)	345, 603
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	194, 638, 907
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	631, 735
XagI	CCTNNNNNAGG	1 cut(s)	783
XapI	RAATTY	2 cut(s)	418, 653
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	1 cut(s)	792
ZraI	GACGTC	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.