Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Forward (+)

9509461 .. 9514288

Gene Structure 4828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1055400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATTTTTATGGATATGGGTATCATGGGACATCGTTTGAGCAGACATATCGATGTTATCCTGCATCTTTCATTGAAAAGCCACAAATTGAAAGTGGTGATAAAATTATAATGCCTCCCTCAGCCCTTGACCGTCTTGCATCTTTACACATTGATTATCCAATGTTGTTTGAGCTTCGAAATGAATCCGCTGAACGGGTCTCTCATTGTGGGGTGCTGGAGTTCATTGCAGAAGAAGGCATGATCTATATGCCTTATTGGATGATGGAGAATATGCTCTTGCAAGAAGGTGATGTTGTGCGAGTGAAAAATGCAACTCTTCCGAAGGGAACATATGTTAAATTACAACCCCATACAAAGGACTTTCTAGATATCTCAAATCCAAAAGCTATCTTGGAGACAACGCTGAGGAATTTTTCTTGCTTAACCACTGGGGACAGTATTATGGTAGCATACAACAATAAGAAGTACTATATAGATATTATAGATGCGAAGCCTTCTCATGCAATAACTATTATTGAGACAGACTGTGAGGTAGACTTTGCACCTCCGCTTGACTATAAGGAACCTGAAAGGCCAGCCGCATCTGGCCGTCTAAATAAGGCAACTGCTCAAGTTGAAGAGGATCCTGCTGAGGCTGAACCTAAATTTAACCCTTTTACCGGATCTGGAAGACGCTTGGATGGGAAACCTTTGAAATATGAGCCAGCACCAGCTTCTTCCTCAGGGTCCAACGACAAGAAACCTGCAGTCACCAATGGAAATGCACAACCTTCTATGGGATCTAGTTCACAGGCTACCAGTCGTCAGGCTCAGGGAAAACTTGTTTTTGGAGCAAATGCCAGTCGCACTCCAAAGGAAACACAAAAGGAAGCTGCAAAAGAGACTAAGAAAGAGCAGCAGCCGGAAGCGAAAGAAGAGCCGAAGTTCCAGCCGTTTACTGGGAAAAAGTACTCGCTGAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

323

Amino Acids

35.9

Weight (kDa)

5.87

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	13 - 108	1e-41	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	109 - 184	1.5e-36	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	3 cut(s)	189, 551, 582
AclWI	GGATC	4 cut(s)	620, 633, 673, 790
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	2 cut(s)	412, 647
AfaI	GTAC	2 cut(s)	470, 953
AfiI	CCNNNNNNNGG	5 cut(s)	195, 358, 662, 779, 941
AgsI	TTSAA	4 cut(s)	77, 92, 620, 697
AluBI	AGCT	4 cut(s)	175, 389, 716, 875
AluI	AGCT	4 cut(s)	175, 389, 716, 875
Alw26I	GTCTC	4 cut(s)	205, 392, 515, 878
AlwI	GGATC	4 cut(s)	620, 633, 673, 790
AoxI	GGCC	2 cut(s)	575, 589
ApeKI	GCWGC	3 cut(s)	875, 898, 901
ApoI	RAATTY	2 cut(s)	412, 647
AspS9I	GGNCC	1 cut(s)	729
AsuHPI	GGTGA	3 cut(s)	110, 302, 745
AsuII	TTCGAA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	729
AxyI	CCTNAGG	1 cut(s)	724
BamHI	GGATCC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	679
BbvCI	CCTCAGC	4 cut(s)	121, 407, 633, 959
BbvI	GCAGC	3 cut(s)	862, 910, 913
BccI	CCATC	2 cut(s)	259, 677
BceAI	ACGGC	2 cut(s)	576, 919
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BcoDI	GTCTC	4 cut(s)	205, 392, 515, 878
BfaI	CTAG	2 cut(s)	368, 786
BfmI	CTRYAG	1 cut(s)	747
BfuAI	ACCTGC	1 cut(s)	754
BisI	GCNGC	4 cut(s)	582, 876, 899, 902
BlsI	GCNGC	4 cut(s)	583, 877, 900, 903
BmcAI	AGTACT	2 cut(s)	470, 953
Bme18I	GGWCC	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	729
BmiI	GGNNCC	3 cut(s)	567, 627, 730
BmrI	ACTGGG	2 cut(s)	441, 951
BmsI	GCATC	4 cut(s)	74, 149, 478, 593
BmuI	ACTGGG	2 cut(s)	441, 951
BpiI	GAAGAC	1 cut(s)	679
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	5 cut(s)	121, 407, 633, 813, 959
Bpu14I	TTCGAA	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 358, 662, 779, 941
Bse1I	ACTGG	4 cut(s)	436, 801, 843, 946
Bse21I	CCTNAGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	52
BseGI	GGATG	2 cut(s)	267, 688
BseLI	CCNNNNNNNGG	5 cut(s)	195, 358, 662, 779, 941
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	6 cut(s)	135, 398, 624, 738, 827, 950
BseNI	ACTGG	4 cut(s)	436, 801, 843, 946
BseXI	GCAGC	3 cut(s)	862, 910, 913
BshFI	GGCC	2 cut(s)	577, 591
BshVI	ATCGAT	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	663, 905
BslFI	GGGAC	2 cut(s)	43, 449
BslI	CCNNNNNNNGG	5 cut(s)	195, 358, 662, 779, 941
BsmAI	GTCTC	4 cut(s)	205, 392, 515, 878
BsmFI	GGGAC	2 cut(s)	43, 449
BsnI	GGCC	2 cut(s)	577, 591
Bso31I	GGTCTC	1 cut(s)	205
Bsp119I	TTCGAA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	243, 625, 665, 782
BspACI	CCGC	3 cut(s)	189, 551, 582
BspANI	GGCC	2 cut(s)	577, 591
BspCNI	CTCAG	6 cut(s)	134, 399, 625, 737, 826, 951
BspDI	ATCGAT	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	567, 627, 730
BspMAI	CTGCAG	1 cut(s)	751
BspMI	ACCTGC	1 cut(s)	754
BspPI	GGATC	4 cut(s)	620, 633, 673, 790
BspQI	GCTCTTC	1 cut(s)	912
BspT104I	TTCGAA	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	4 cut(s)	436, 801, 843, 946
BssMI	GATC	4 cut(s)	243, 625, 665, 782
Bst4CI	ACNGT	3 cut(s)	134, 440, 530
Bst6I	CTCTTC	3 cut(s)	324, 615, 912
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	579, 708
BstDEI	CTNAG	7 cut(s)	121, 407, 633, 724, 813, 888, 959
BstF5I	GGATG	2 cut(s)	267, 688
BstKTI	GATC	4 cut(s)	246, 628, 668, 785
BstMAI	GTCTC	4 cut(s)	205, 392, 515, 878
BstMBI	GATC	4 cut(s)	243, 625, 665, 782
BstSFI	CTRYAG	1 cut(s)	747
BstV1I	GCAGC	3 cut(s)	862, 910, 913
BstV2I	GAAGAC	1 cut(s)	679
BstX2I	RGATCY	3 cut(s)	625, 665, 782
BstYI	RGATCY	3 cut(s)	625, 665, 782
Bsu15I	ATCGAT	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	724
BsuRI	GGCC	2 cut(s)	577, 591
BsuTUI	ATCGAT	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	267, 688
BtsIMutI	CAGTG	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	2 cut(s)	579, 708
Cfr13I	GGNCC	1 cut(s)	729
ClaI	ATCGAT	1 cut(s)	52
CseI	GACGC	1 cut(s)	684
Csp6I	GTAC	2 cut(s)	469, 952
CviAII	CATG	3 cut(s)	26, 241, 503
CviQI	GTAC	2 cut(s)	469, 952
DdeI	CTNAG	7 cut(s)	121, 407, 633, 724, 813, 888, 959
DpnI	GATC	4 cut(s)	245, 627, 667, 784
DpnII	GATC	4 cut(s)	243, 625, 665, 782
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	3 cut(s)	324, 615, 912
EarI	CTCTTC	3 cut(s)	324, 615, 912
Eco31I	GGTCTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	729
Eco81I	CCTNAGG	1 cut(s)	724
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	3 cut(s)	29, 244, 506
FaqI	GGGAC	2 cut(s)	43, 449
FatI	CATG	3 cut(s)	25, 240, 502
FauNDI	CATATG	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	4 cut(s)	582, 876, 899, 902
FokI	GGATG	2 cut(s)	274, 695
Fsp4HI	GCNGC	4 cut(s)	582, 876, 899, 902
FspBI	CTAG	2 cut(s)	368, 786
GluI	GCNGC	4 cut(s)	582, 876, 899, 902
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	577, 591
HapII	CCGG	2 cut(s)	663, 905
HgaI	GACGC	1 cut(s)	684
Hin1II	CATG	3 cut(s)	29, 244, 506
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	663, 905
HphI	GGTGA	3 cut(s)	110, 302, 745
Hpy166II	GTNNAC	3 cut(s)	538, 791, 939
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	2 cut(s)	368, 669
Hpy8I	GTNNAC	3 cut(s)	538, 791, 939
HpyAV	CCTTC	5 cut(s)	230, 281, 319, 507, 783
HpyCH4III	ACNGT	3 cut(s)	134, 440, 530
HpyF3I	CTNAG	7 cut(s)	121, 407, 633, 724, 813, 888, 959
Hsp92II	CATG	3 cut(s)	29, 244, 506
Kzo9I	GATC	4 cut(s)	243, 625, 665, 782
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	1 cut(s)	833
Lsp1109I	GCAGC	3 cut(s)	862, 910, 913
LweI	GCATC	4 cut(s)	74, 149, 478, 593
MaeI	CTAG	2 cut(s)	368, 786
MaeIII	GTNAC	1 cut(s)	751
MalI	GATC	4 cut(s)	245, 627, 667, 784
MboI	GATC	4 cut(s)	243, 625, 665, 782
MboII	GAAGA	6 cut(s)	245, 311, 632, 684, 711, 929
MflI	RGATCY	3 cut(s)	625, 665, 782
MluCI	AATT	5 cut(s)	87, 105, 341, 412, 647
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	9 cut(s)	126, 130, 402, 526, 558, 616, 628, 733, 954
MseI	TTAA	3 cut(s)	339, 425, 651
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	663, 905
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	4 cut(s)	243, 625, 665, 782
NlaIII	CATG	3 cut(s)	29, 244, 506
NlaIV	GGNNCC	3 cut(s)	567, 627, 730
NmuCI	GTSAC	1 cut(s)	751
NspV	TTCGAA	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	912
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	583, 877, 900, 903
PsiI	TTATAA	1 cut(s)	110
PspN4I	GGNNCC	3 cut(s)	567, 627, 730
PspPI	GGNCC	1 cut(s)	729
PstI	CTGCAG	1 cut(s)	751
PsuI	RGATCY	3 cut(s)	625, 665, 782
RsaI	GTAC	2 cut(s)	470, 953
RsaNI	GTAC	2 cut(s)	469, 952
RseI	CAYNNNNRTG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	3 cut(s)	339, 425, 651
SatI	GCNGC	4 cut(s)	582, 876, 899, 902
Sau3AI	GATC	4 cut(s)	243, 625, 665, 782
Sau96I	GGNCC	1 cut(s)	729
ScaI	AGTACT	2 cut(s)	470, 953
SfaNI	GCATC	4 cut(s)	74, 149, 478, 593
SfcI	CTRYAG	1 cut(s)	747
SfuI	TTCGAA	1 cut(s)	178
SinI	GGWCC	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	5 cut(s)	87, 105, 341, 412, 647
SsiI	CCGC	3 cut(s)	189, 551, 582
SspMI	CTAG	2 cut(s)	368, 786
TaaI	ACNGT	3 cut(s)	134, 440, 530
TaqI	TCGA	2 cut(s)	52, 178
TasI	AATT	5 cut(s)	87, 105, 341, 412, 647
TatI	WGTACW	2 cut(s)	468, 951
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	339, 425, 651
Tru9I	TTAA	3 cut(s)	339, 425, 651
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	3 cut(s)	875, 898, 901
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	3 cut(s)	61, 198, 214
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	729
XapI	RAATTY	2 cut(s)	412, 647
XbaI	TCTAGA	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	2 cut(s)	368, 786
ZrmI	AGTACT	2 cut(s)	470, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.