Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Reverse (-)

11625599 .. 11630287

Gene Structure 4689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G083000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTATTTTGATGGTTATGGGTATCACGGGACTTCATTCGAACAGACATATCGATGTTATCCTGCATCTTTTATTGAGAAGCCACAAATTGAAAGTGGTGATAAAATTATAATGCCTCCCTCAGCCCTTGACCGCCTTGCATCTTTACACATTGATTATCCAATGTTGTTTGAGCTTCAAAATGATTCTGCTGAGCGGGTCTCTCATTGTGGGGTGCTGGAGTTCATTGCAGAAGAAGGCATGATCTATATGCCTTATTGGATGATGGAGAATATGCTTTTGCAAGAAGGTGATATTGTGCGAGTGAAAAATGTGACTCTTCCGAAGGGAACATATGTTAAATTGCAACCCCATACAAAGGACTTTCTAGATATCTCAAATCCAAAAGCGATCTTGGAGACAACGCTGAGGAATTTTTCTTGCTTAACCACGGGGGATAGTATTATGGTAGCATATAACAACAAGAAGTATTATATAGATATTATAGAAGCAAAGCCTTCTCACGCAATAAGTATTATTGAGACAGACTGTGAGGTGGACTTTGCACCTCCTCTTGACTATAAGGAACCGGAAAAGCCTGTTGCATCTGGTCCTCTAAACAAGGCAGCTGCTCAAGTTGAAGAGGATCCTGCTGAGATGGAGCCGAAATTCAACCCTTTTACTGGAGCTGGGAGACGCTTGGATGGGAGGCCTTTGAAGTATGAGCCGGCACCAGTTTCTTCCTCAGGTTCAAAAGACAAGAAACCTCTGGTCACCAACGGTAATGCACAGCCTTCTACGGGATCTAGTTCACAAGCTACCAGTCGTCAAGCTCAGGGAAAGCTTGTTTTTGGAGGAAATGCCAACCGTGCTCCAAAGGAAACACAAAAGGAAGCTGCAAAGGAGACTAAAAAAGAGGAGCAGGCCGAAAAGAAAGAAGACCCGAAGTTCCAGCCTTTTACCGGAAAAAAATACTCATTGAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

323

Amino Acids

35.94

Weight (kDa)

5.71

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	709
AccBSI	CCGCTC	1 cut(s)	196
AciI	CCGC	2 cut(s)	133, 196
AclWI	GGATC	3 cut(s)	620, 633, 790
AcsI	RAATTY	2 cut(s)	412, 647
AfiI	CCNNNNNNNGG	4 cut(s)	358, 662, 779, 941
AgsI	TTSAA	6 cut(s)	92, 179, 620, 652, 697, 732
AluBI	AGCT	7 cut(s)	175, 608, 668, 797, 812, 823, 875
AluI	AGCT	7 cut(s)	175, 608, 668, 797, 812, 823, 875
Alw21I	GWGCWC	1 cut(s)	853
Alw26I	GTCTC	5 cut(s)	205, 392, 515, 667, 878
AlwI	GGATC	3 cut(s)	620, 633, 790
AoxI	GGCC	2 cut(s)	689, 903
ApeKI	GCWGC	3 cut(s)	605, 608, 875
ApoI	RAATTY	2 cut(s)	412, 647
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	3 cut(s)	110, 302, 745
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	590
AxyI	CCTNAGG	1 cut(s)	724
BamHI	GGATCC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	709
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	853
BbvCI	CCTCAGC	2 cut(s)	121, 407
BbvI	GCAGC	3 cut(s)	595, 617, 862
BccI	CCATC	4 cut(s)	5, 259, 631, 677
BcoDI	GTCTC	5 cut(s)	205, 392, 515, 667, 878
BfaI	CTAG	2 cut(s)	368, 786
BisI	GCNGC	3 cut(s)	606, 609, 876
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	3 cut(s)	607, 610, 877
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	4 cut(s)	567, 627, 642, 711
BmsI	GCATC	3 cut(s)	74, 149, 593
BpiI	GAAGAC	1 cut(s)	924
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	2 cut(s)	239, 684
Bpu10I	CCTNAGC	3 cut(s)	121, 407, 813
Bpu1102I	GCTNAGC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	2 cut(s)	568, 941
Bsc4I	CCNNNNNNNGG	4 cut(s)	358, 662, 779, 941
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	3 cut(s)	667, 713, 801
Bse21I	CCTNAGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	267, 688
BseLI	CCNNNNNNNGG	4 cut(s)	358, 662, 779, 941
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	6 cut(s)	135, 183, 398, 624, 738, 827
BseNI	ACTGG	3 cut(s)	667, 713, 801
BseRI	GAGGAG	2 cut(s)	540, 911
BseXI	GCAGC	3 cut(s)	595, 617, 862
BseYI	CCCAGC	1 cut(s)	668
BshFI	GGCC	2 cut(s)	691, 905
BshNI	GGYRCC	1 cut(s)	709
BshVI	ATCGAT	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	853
BsiSI	CCGG	3 cut(s)	569, 707, 942
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	4 cut(s)	358, 662, 779, 941
BsmAI	GTCTC	5 cut(s)	205, 392, 515, 667, 878
BsmBI	CGTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	691, 905
Bso31I	GGTCTC	1 cut(s)	205
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	853
Bsp143I	GATC	4 cut(s)	243, 390, 625, 782
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	2 cut(s)	133, 196
BspANI	GGCC	2 cut(s)	691, 905
BspCNI	CTCAG	6 cut(s)	134, 184, 399, 625, 737, 826
BspDI	ATCGAT	1 cut(s)	52
BspLI	GGNNCC	4 cut(s)	567, 627, 642, 711
BspPI	GGATC	3 cut(s)	620, 633, 790
BspT104I	TTCGAA	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	709
BspTNI	GGTCTC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	3 cut(s)	667, 713, 801
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	243, 390, 625, 782
Bst4CI	ACNGT	3 cut(s)	530, 761, 848
Bst6I	CTCTTC	2 cut(s)	324, 615
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	708, 903
BstDEI	CTNAG	6 cut(s)	121, 192, 407, 633, 724, 813
BstDSI	CCRYGG	1 cut(s)	429
BstEII	GGTNACC	1 cut(s)	751
BstF5I	GGATG	2 cut(s)	267, 688
BstKTI	GATC	4 cut(s)	246, 393, 628, 785
BstMAI	GTCTC	5 cut(s)	205, 392, 515, 667, 878
BstMBI	GATC	4 cut(s)	243, 390, 625, 782
BstMWI	GCNNNNNNNGC	1 cut(s)	848
BstPI	GGTNACC	1 cut(s)	751
BstV1I	GCAGC	3 cut(s)	595, 617, 862
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	2 cut(s)	625, 782
BstYI	RGATCY	2 cut(s)	625, 782
Bsu15I	ATCGAT	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	724
BsuRI	GGCC	2 cut(s)	691, 905
BsuTUI	ATCGAT	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	267, 688
Cac8I	GCNNGC	2 cut(s)	708, 903
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	590
ClaI	ATCGAT	1 cut(s)	52
CseI	GACGC	1 cut(s)	684
CviAII	CATG	1 cut(s)	241
DdeI	CTNAG	6 cut(s)	121, 192, 407, 633, 724, 813
DpnI	GATC	4 cut(s)	245, 392, 627, 784
DpnII	GATC	4 cut(s)	243, 390, 625, 782
Eam1104I	CTCTTC	2 cut(s)	324, 615
EarI	CTCTTC	2 cut(s)	324, 615
Eco147I	AGGCCT	1 cut(s)	691
Eco31I	GGTCTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	590
Eco81I	CCTNAGG	1 cut(s)	724
Eco91I	GGTNACC	1 cut(s)	751
EcoO65I	GGTNACC	1 cut(s)	751
EcoRV	GATATC	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	667
FaeI	CATG	1 cut(s)	244
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	1 cut(s)	240
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	606, 609, 876
FokI	GGATG	2 cut(s)	274, 695
Fsp4HI	GCNGC	3 cut(s)	606, 609, 876
FspBI	CTAG	2 cut(s)	368, 786
GluI	GCNGC	3 cut(s)	606, 609, 876
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	2 cut(s)	239, 684
HaeIII	GGCC	2 cut(s)	691, 905
HapII	CCGG	3 cut(s)	569, 707, 942
HgaI	GACGC	1 cut(s)	684
Hin1II	CATG	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	2 cut(s)	185, 316
HpaII	CCGG	3 cut(s)	569, 707, 942
HphI	GGTGA	3 cut(s)	110, 302, 745
Hpy166II	GTNNAC	2 cut(s)	538, 791
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	2 cut(s)	368, 554
Hpy8I	GTNNAC	2 cut(s)	538, 791
HpyAV	CCTTC	5 cut(s)	230, 281, 319, 507, 783
HpyCH4III	ACNGT	3 cut(s)	530, 761, 848
HpyCH4V	TGCA	9 cut(s)	65, 140, 230, 283, 346, 545, 584, 767, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	848
HpyF3I	CTNAG	6 cut(s)	121, 192, 407, 633, 724, 813
Hsp92II	CATG	1 cut(s)	244
KroI	GCCGGC	1 cut(s)	706
KroNI	GCCGGC	1 cut(s)	708
Kzo9I	GATC	4 cut(s)	243, 390, 625, 782
LmnI	GCTCC	4 cut(s)	640, 665, 856, 898
Lsp1109I	GCAGC	3 cut(s)	595, 617, 862
LweI	GCATC	3 cut(s)	74, 149, 593
MaeI	CTAG	2 cut(s)	368, 786
MaeIII	GTNAC	2 cut(s)	313, 751
MalI	GATC	4 cut(s)	245, 392, 627, 784
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	4 cut(s)	243, 390, 625, 782
MboII	GAAGA	5 cut(s)	245, 311, 632, 711, 929
MflI	RGATCY	2 cut(s)	625, 782
MhlI	GDGCHC	1 cut(s)	853
MluCI	AATT	5 cut(s)	87, 105, 341, 412, 647
MlyI	GAGTC	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	706
MseI	TTAA	2 cut(s)	339, 425
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	3 cut(s)	569, 707, 942
MwoI	GCNNNNNNNGC	1 cut(s)	848
NaeI	GCCGGC	1 cut(s)	708
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	4 cut(s)	243, 390, 625, 782
NgoMIV	GCCGGC	1 cut(s)	706
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	4 cut(s)	567, 627, 642, 711
NmuCI	GTSAC	2 cut(s)	313, 751
NspV	TTCGAA	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	691
PdiI	GCCGGC	1 cut(s)	708
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	607, 610, 877
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	751
PspFI	CCCAGC	1 cut(s)	668
PspN4I	GGNNCC	4 cut(s)	567, 627, 642, 711
PspPI	GGNCC	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	625, 782
PvuII	CAGCTG	1 cut(s)	608
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	339, 425
SatI	GCNGC	3 cut(s)	606, 609, 876
Sau3AI	GATC	4 cut(s)	243, 390, 625, 782
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	853
SfaNI	GCATC	3 cut(s)	74, 149, 593
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	5 cut(s)	87, 105, 341, 412, 647
SseBI	AGGCCT	1 cut(s)	691
SsiI	CCGC	2 cut(s)	133, 196
SspMI	CTAG	2 cut(s)	368, 786
StuI	AGGCCT	1 cut(s)	691
TaaI	ACNGT	3 cut(s)	530, 761, 848
TaqI	TCGA	2 cut(s)	39, 52
TasI	AATT	5 cut(s)	87, 105, 341, 412, 647
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	339, 425
Tru9I	TTAA	2 cut(s)	339, 425
TseFI	GTSAC	2 cut(s)	313, 751
TseI	GCWGC	3 cut(s)	605, 608, 875
Tsp45I	GTSAC	2 cut(s)	313, 751
TspDTI	ATGAA	2 cut(s)	24, 214
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	2 cut(s)	412, 647
XbaI	TCTAGA	1 cut(s)	367
XspI	CTAG	2 cut(s)	368, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.