Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Forward (+)

47277120 .. 47284337

Gene Structure 7218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTATTTTGATGGATATGGGTATCATGGGACATCATTCGAGCAGACATATCGATGTTATCCCGCATCATTTATTGAAAAGCCGCAACTTGAAAGTGGTGATAAAATTATAATGCCTCCCTCAGCCCTTGACCGCCTTGCATCGCTACACATTGATTATCCAATGTTGTTTGAGCTTCGTAATGACGCTGCTGACCGGGTCTCTCATTGTGGGGTGTTGGAGTTCATCGCAGAAGAAGGCATGATCTACATGCCTTATTGGATGATGGAGAATATGCTCTTGCAAGAGGGGGACATTGTGCGACTGAAAAATGTGACTCTTCCAAAGGGAACATATGTTAAACTTCAACCCCATACAAAGGACTTTTTAGACATCTCAAATCCAAAAGCTATCTTGGAGACGACACTAAGGAATTTTTCCTGCTTGACCACTGGGGATAGTATTATGGTAGCATACAACAACAAGAAGTATTATATAGATATCGTGGAATCCAAGCCTTCTAATGCAATAAGTATTATTGAGACAGACTGTGAGGTGGACTTTGCACCTCCTCTTGATTACAAGGAACCTGAAAGGCCTGTGGCACCTGTTCCTCTTAACAAGGCAACAGCTCAAGTTGAAGGGGACCCTGCTGCGACCGAACCAAAATTCAACCCTTTTACTGGAGCTGGAAGGCGCTTGGATGGTAAGCCTTTGAAGTATGAGCCAGCACCAGCTTCCTCATCAGGGTCCAAGGACAAGAAACCTGTGGCCGCCAATGGTACTACGGCACCACCTTCTGCAGGATCTAGTTCACAAAGTGCCAATCGTCAGGCTCAGGGAAAGCTTGTTTTTGGAGCAAATGCCAGCCGTATTCCAAAAGAGACACCGAAGAAGGAAGCTACAAAAGACGCTAAACAAGAGCAGCAACCTGAAAAGAAAGAAGATCCCAAGTTCCAGCCATTTACCGGGAAAAAGTACTCGCTTAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

324

Amino Acids

35.93

Weight (kDa)

6.48

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	13 - 108	9.4e-41	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	109 - 184	1.1e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AccB1I	GGYRCC	2 cut(s)	583, 769
AciI	CCGC	4 cut(s)	63, 83, 133, 753
AclWI	GGATC	2 cut(s)	793, 920
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	2 cut(s)	412, 647
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	2 cut(s)	763, 959
AfiI	CCNNNNNNNGG	5 cut(s)	358, 662, 726, 782, 947
AgsI	TTSAA	6 cut(s)	77, 92, 347, 620, 652, 697
AluBI	AGCT	7 cut(s)	175, 389, 611, 668, 716, 826, 881
AluI	AGCT	7 cut(s)	175, 389, 611, 668, 716, 826, 881
Alw26I	GTCTC	4 cut(s)	205, 392, 515, 857
AlwI	GGATC	2 cut(s)	793, 920
AoxI	GGCC	2 cut(s)	575, 750
ApeKI	GCWGC	3 cut(s)	188, 632, 904
ApoI	RAATTY	2 cut(s)	412, 647
AspLEI	GCGC	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	625, 729
AsuC2I	CCSGG	2 cut(s)	197, 949
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	625, 729
BanI	GGYRCC	2 cut(s)	583, 769
BbvCI	CCTCAGC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	175, 619, 916
BccI	CCATC	3 cut(s)	5, 259, 677
BceAI	ACGGC	2 cut(s)	783, 834
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BcnI	CCSGG	2 cut(s)	197, 949
BcoDI	GTCTC	4 cut(s)	205, 392, 515, 857
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	780
BfoI	RGCGCY	1 cut(s)	679
BisI	GCNGC	5 cut(s)	83, 189, 633, 753, 905
BlsI	GCNGC	5 cut(s)	84, 190, 634, 754, 906
BmcAI	AGTACT	1 cut(s)	959
Bme1390I	CCNGG	2 cut(s)	197, 949
Bme18I	GGWCC	2 cut(s)	625, 729
BmgT120I	GGNCC	2 cut(s)	625, 729
BmiI	GGNNCC	6 cut(s)	567, 585, 626, 627, 730, 771
BmrFI	CCNGG	2 cut(s)	197, 949
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	74, 149
BmuI	ACTGGG	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	3 cut(s)	121, 816, 965
BpuEI	CTTGAG	1 cut(s)	597
BpuMI	CCSGG	2 cut(s)	197, 949
Bsa29I	ATCGAT	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	732
Bsc4I	CCNNNNNNNGG	5 cut(s)	358, 662, 726, 782, 947
Bse1I	ACTGG	2 cut(s)	436, 667
BseCI	ATCGAT	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	2 cut(s)	267, 688
BseLI	CCNNNNNNNGG	5 cut(s)	358, 662, 726, 782, 947
BseMII	CTCAG	2 cut(s)	135, 830
BseNI	ACTGG	2 cut(s)	436, 667
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	3 cut(s)	175, 619, 916
Bsh1285I	CGRYCG	1 cut(s)	639
BshFI	GGCC	2 cut(s)	577, 752
BshNI	GGYRCC	2 cut(s)	583, 769
BshVI	ATCGAT	1 cut(s)	52
BsiEI	CGRYCG	1 cut(s)	639
BsiSI	CCGG	2 cut(s)	196, 948
BslFI	GGGAC	3 cut(s)	43, 305, 638
BslI	CCNNNNNNNGG	5 cut(s)	358, 662, 726, 782, 947
BsmAI	GTCTC	4 cut(s)	205, 392, 515, 857
BsmBI	CGTCTC	1 cut(s)	392
BsmFI	GGGAC	3 cut(s)	43, 305, 638
BsnI	GGCC	2 cut(s)	577, 752
Bso31I	GGTCTC	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	243, 785, 925
BspACI	CCGC	4 cut(s)	63, 83, 133, 753
BspANI	GGCC	2 cut(s)	577, 752
BspCNI	CTCAG	2 cut(s)	134, 829
BspDI	ATCGAT	1 cut(s)	52
BspLI	GGNNCC	6 cut(s)	567, 585, 626, 627, 730, 771
BspMAI	CTGCAG	1 cut(s)	784
BspPI	GGATC	2 cut(s)	793, 920
BspT107I	GGYRCC	2 cut(s)	583, 769
BspTNI	GGTCTC	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	436, 667
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	3 cut(s)	243, 785, 925
BssT1I	CCWWGG	1 cut(s)	732
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	708, 847
BstDEI	CTNAG	4 cut(s)	121, 407, 816, 965
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	267, 688
BstH2I	RGCGCY	1 cut(s)	679
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	3 cut(s)	246, 788, 928
BstMAI	GTCTC	4 cut(s)	205, 392, 515, 857
BstMBI	GATC	3 cut(s)	243, 785, 925
BstMCI	CGRYCG	1 cut(s)	639
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	195, 947
BstSFI	CTRYAG	1 cut(s)	780
BstV1I	GCAGC	3 cut(s)	175, 619, 916
BstX2I	RGATCY	2 cut(s)	785, 925
BstYI	RGATCY	2 cut(s)	785, 925
Bsu15I	ATCGAT	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	577, 752
BsuTUI	ATCGAT	1 cut(s)	52
BtgZI	GCGATG	2 cut(s)	126, 211
BtsCI	GGATG	2 cut(s)	267, 688
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	708, 847
CfoI	GCGC	1 cut(s)	678
Cfr13I	GGNCC	2 cut(s)	625, 729
ClaI	ATCGAT	1 cut(s)	52
CseI	GACGC	2 cut(s)	194, 899
Csp6I	GTAC	2 cut(s)	762, 958
CviAII	CATG	3 cut(s)	26, 241, 250
CviQI	GTAC	2 cut(s)	762, 958
DdeI	CTNAG	4 cut(s)	121, 407, 816, 965
DpnI	GATC	3 cut(s)	245, 787, 927
DpnII	GATC	3 cut(s)	243, 785, 925
DraIII	CACNNNGTG	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	732
Eco147I	AGGCCT	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	625, 729
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	3 cut(s)	29, 244, 253
FaqI	GGGAC	3 cut(s)	43, 305, 638
FatI	CATG	3 cut(s)	25, 240, 249
FauI	CCCGC	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	5 cut(s)	83, 189, 633, 753, 905
FokI	GGATG	2 cut(s)	274, 695
Fsp4HI	GCNGC	5 cut(s)	83, 189, 633, 753, 905
FspBI	CTAG	1 cut(s)	789
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	5 cut(s)	83, 189, 633, 753, 905
GsuI	CTGGAG	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	679
HaeIII	GGCC	2 cut(s)	577, 752
HapII	CCGG	2 cut(s)	196, 948
HgaI	GACGC	2 cut(s)	194, 899
HhaI	GCGC	1 cut(s)	678
Hin1II	CATG	3 cut(s)	29, 244, 253
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	2 cut(s)	316, 488
HpaII	CCGG	2 cut(s)	196, 948
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	538, 794
Hpy188III	TCNNGA	1 cut(s)	554
Hpy8I	GTNNAC	2 cut(s)	538, 794
HpyAV	CCTTC	6 cut(s)	230, 507, 614, 666, 786, 868
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4V	TGCA	5 cut(s)	140, 283, 506, 545, 782
HpyF3I	CTNAG	4 cut(s)	121, 407, 816, 965
Hsp92II	CATG	3 cut(s)	29, 244, 253
HspAI	GCGC	1 cut(s)	676
KflI	GGGWCCC	1 cut(s)	625
Kzo9I	GATC	3 cut(s)	243, 785, 925
LmnI	GCTCC	2 cut(s)	665, 836
Lsp1109I	GCAGC	3 cut(s)	175, 619, 916
LweI	GCATC	2 cut(s)	74, 149
MaeI	CTAG	1 cut(s)	789
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	245, 787, 927
MboI	GATC	3 cut(s)	243, 785, 925
MboII	GAAGA	4 cut(s)	245, 311, 883, 935
MflI	RGATCY	2 cut(s)	785, 925
MluCI	AATT	3 cut(s)	105, 412, 647
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	8 cut(s)	126, 130, 280, 526, 558, 561, 603, 730
MseI	TTAA	2 cut(s)	339, 597
MslI	CAYNNNNRTG	1 cut(s)	52
MspI	CCGG	2 cut(s)	196, 948
MspR9I	CCNGG	2 cut(s)	197, 949
NciI	CCSGG	2 cut(s)	197, 949
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	3 cut(s)	243, 785, 925
NlaIII	CATG	3 cut(s)	29, 244, 253
NlaIV	GGNNCC	6 cut(s)	567, 585, 626, 627, 730, 771
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	488
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	84, 190, 634, 754, 906
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	625
PspN4I	GGNNCC	6 cut(s)	567, 585, 626, 627, 730, 771
PspPI	GGNCC	2 cut(s)	625, 729
PspPPI	RGGWCCY	1 cut(s)	625
PstI	CTGCAG	1 cut(s)	784
PsuI	RGATCY	2 cut(s)	785, 925
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	2 cut(s)	763, 959
RsaNI	GTAC	2 cut(s)	762, 958
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	339, 597
SatI	GCNGC	5 cut(s)	83, 189, 633, 753, 905
Sau3AI	GATC	3 cut(s)	243, 785, 925
Sau96I	GGNCC	2 cut(s)	625, 729
ScaI	AGTACT	1 cut(s)	959
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	197, 949
SfaNI	GCATC	2 cut(s)	74, 149
SfcI	CTRYAG	1 cut(s)	780
SinI	GGWCC	2 cut(s)	625, 729
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	3 cut(s)	105, 412, 647
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	4 cut(s)	63, 83, 133, 753
SspMI	CTAG	1 cut(s)	789
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	2 cut(s)	195, 947
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	1 cut(s)	530
TaqI	TCGA	2 cut(s)	39, 52
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	3 cut(s)	105, 412, 647
TatI	WGTACW	1 cut(s)	957
TauI	GCSGC	2 cut(s)	85, 755
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	2 cut(s)	339, 597
Tru9I	TTAA	2 cut(s)	339, 597
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	188, 632, 904
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	436
Tth111I	GACNNNGTC	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	625, 729
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	2 cut(s)	412, 647
XceI	RCATGY	1 cut(s)	253
XspI	CTAG	1 cut(s)	789
ZrmI	AGTACT	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.