Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Reverse (-)

9333768 .. 9340794

Gene Structure 7027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTATTTTGATGGATATGGGTATCACGGGACATCATTCGAGCAGACGTATCGATGTTATCCTGCATCATTTATTGAAAAGCCGCAACTTGAAAGTGGCGATAAAATTATAATGCCTCCCTCAGCCCTTGACCGCCTCGCATCACTACACATTGATTATCCAATGTTGTTTGAGCTTCGTAATGACGCTGCTGAGCGGGTCTCTCATTGTGGGGTGTTGGAGTTCATTGCAGAAGAAGGCATGATCTACATGCCTTATTGGATGATGGAGAATATGCTCTTGCAAGAGGGGGATGTTGTGCGAGTGAAAAATGTGACTCTTCCAAAGGGAACATATGTTAAACTTCAACCTCATACAAAGGACTTTTTAGACATCTCAAATCCAAAAGCTATCTTGGAGACAACTCTAAGGAATTTTTCGTGCTTGACCGTTGGGGATAGTATTATGGTAGCCTACAACAACAAGAAGTATTATATAGATATCATGGAATCAAAGCCTTCTAATGCAATAAGTATAATTGAGACAGACTGTGAGGTGGACTTTGCACCTCCTCTTGATTATAAGGAACCTGAAAGGCCTGTGGCACATGTTCCTCTGAACAAGGCAACAGCTCAAGTTGAAGAGGCCCCTGCTGAGACTGAACCAAAATTCAACCCTTTTACTGGAGCTGGAAGGCGCTTGGATGGGAAGCCTTTGAAATATGAGCCTGCACCAGCTTCCTCATCAGGATCCAAAGACAAGAAACCTGTGGTTGCCAATGGTACCGCACCACCTTCCACAGGATCTAGTTCACAAACTGGCAATCGTCAGGCTCAGGGAAAGCTAGTTTTTGGAGCAAATGCTAGCCGTATTCCAAAGGAGACACCAAAGAAGGAAGCTACAAAAGACGCTAAACAAGAGCAGCAACCTGAAAAGAAAGAAGATCCCAAGTTCCAGCCATTTACAGGGAAAAAGTACTCACTAAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

324

Amino Acids

36.03

Weight (kDa)

6.27

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	13 - 108	2e-41	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	109 - 184	1.2e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	110, 561
Acc65I	GGTACC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	761
AccBSI	CCGCTC	1 cut(s)	196
AciI	CCGC	4 cut(s)	83, 133, 196, 765
AclWI	GGATC	4 cut(s)	723, 736, 790, 917
AcsI	RAATTY	2 cut(s)	412, 647
AfaI	GTAC	2 cut(s)	763, 956
AfiI	CCNNNNNNNGG	3 cut(s)	662, 779, 944
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	6 cut(s)	77, 92, 347, 620, 652, 697
AluBI	AGCT	7 cut(s)	175, 389, 611, 668, 716, 823, 878
AluI	AGCT	7 cut(s)	175, 389, 611, 668, 716, 823, 878
Alw26I	GTCTC	5 cut(s)	205, 392, 515, 629, 854
AlwI	GGATC	4 cut(s)	723, 736, 790, 917
AoxI	GGCC	2 cut(s)	575, 624
ApeKI	GCWGC	2 cut(s)	188, 901
ApoI	RAATTY	2 cut(s)	412, 647
Asp718I	GGTACC	1 cut(s)	761
AspLEI	GCGC	1 cut(s)	678
AspS9I	GGNCC	1 cut(s)	625
AsuNHI	GCTAGC	1 cut(s)	842
BamHI	GGATCC	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	761
BbvCI	CCTCAGC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	175, 913
BccI	CCATC	3 cut(s)	5, 259, 677
BceAI	ACGGC	1 cut(s)	831
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BcoDI	GTCTC	5 cut(s)	205, 392, 515, 629, 854
BfaI	CTAG	3 cut(s)	786, 824, 843
BfoI	RGCGCY	1 cut(s)	679
BisI	GCNGC	3 cut(s)	83, 189, 902
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	3 cut(s)	84, 190, 903
BmcAI	AGTACT	1 cut(s)	956
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	4 cut(s)	567, 627, 730, 763
BmsI	GCATC	2 cut(s)	74, 149
BmtI	GCTAGC	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	2 cut(s)	121, 813
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	3 cut(s)	662, 779, 944
Bse1I	ACTGG	2 cut(s)	667, 802
Bse3DI	GCAATG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	52
BseGI	GGATG	3 cut(s)	267, 298, 688
BseLI	CCNNNNNNNGG	3 cut(s)	662, 779, 944
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	4 cut(s)	135, 183, 624, 827
BseNI	ACTGG	2 cut(s)	667, 802
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	2 cut(s)	175, 913
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	2 cut(s)	577, 626
BshNI	GGYRCC	1 cut(s)	761
BshVI	ATCGAT	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	662, 779, 944
BsmAI	GTCTC	5 cut(s)	205, 392, 515, 629, 854
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	577, 626
Bso31I	GGTCTC	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	243, 728, 782, 922
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	4 cut(s)	83, 133, 196, 765
BspANI	GGCC	2 cut(s)	577, 626
BspCNI	CTCAG	4 cut(s)	134, 184, 625, 826
BspDI	ATCGAT	1 cut(s)	52
BspLI	GGNNCC	4 cut(s)	567, 627, 730, 763
BspOI	GCTAGC	1 cut(s)	846
BspPI	GGATC	4 cut(s)	723, 736, 790, 917
BspT107I	GGYRCC	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	667, 802
BssMI	GATC	4 cut(s)	243, 728, 782, 922
Bst4CI	ACNGT	2 cut(s)	430, 530
Bst6I	CTCTTC	2 cut(s)	324, 615
BstC8I	GCNNGC	2 cut(s)	708, 844
BstDEI	CTNAG	6 cut(s)	121, 192, 407, 633, 813, 962
BstENI	CCTNNNNNAGG	1 cut(s)	777
BstF5I	GGATG	3 cut(s)	267, 298, 688
BstH2I	RGCGCY	1 cut(s)	679
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	4 cut(s)	246, 731, 785, 925
BstMAI	GTCTC	5 cut(s)	205, 392, 515, 629, 854
BstMBI	GATC	4 cut(s)	243, 728, 782, 922
BstNSI	RCATGY	2 cut(s)	253, 590
BstV1I	GCAGC	2 cut(s)	175, 913
BstX2I	RGATCY	3 cut(s)	728, 782, 922
BstYI	RGATCY	3 cut(s)	728, 782, 922
Bsu15I	ATCGAT	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	577, 626
BsuTUI	ATCGAT	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	267, 298, 688
Cac8I	GCNNGC	2 cut(s)	708, 844
CfoI	GCGC	1 cut(s)	678
Cfr13I	GGNCC	1 cut(s)	625
ClaI	ATCGAT	1 cut(s)	52
CseI	GACGC	2 cut(s)	194, 896
Csp6I	GTAC	2 cut(s)	762, 955
CviAII	CATG	4 cut(s)	241, 250, 484, 587
CviQI	GTAC	2 cut(s)	762, 955
DdeI	CTNAG	6 cut(s)	121, 192, 407, 633, 813, 962
DpnI	GATC	4 cut(s)	245, 730, 784, 924
DpnII	GATC	4 cut(s)	243, 728, 782, 922
Eam1104I	CTCTTC	2 cut(s)	324, 615
EarI	CTCTTC	2 cut(s)	324, 615
Eco147I	AGGCCT	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	481
EcoNI	CCTNNNNNAGG	1 cut(s)	777
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRV	GATATC	1 cut(s)	481
FaeI	CATG	4 cut(s)	244, 253, 487, 590
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	4 cut(s)	240, 249, 483, 586
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	83, 189, 902
FokI	GGATG	3 cut(s)	274, 305, 695
Fsp4HI	GCNGC	3 cut(s)	83, 189, 902
FspBI	CTAG	3 cut(s)	786, 824, 843
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	3 cut(s)	83, 189, 902
GsuI	CTGGAG	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	679
HaeIII	GGCC	2 cut(s)	577, 626
HgaI	GACGC	2 cut(s)	194, 896
HhaI	GCGC	1 cut(s)	678
Hin1II	CATG	4 cut(s)	244, 253, 487, 590
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HinfI	GANTC	2 cut(s)	316, 488
Hpy166II	GTNNAC	2 cut(s)	538, 791
Hpy188I	TCNGA	1 cut(s)	597
Hpy188III	TCNNGA	2 cut(s)	554, 726
Hpy8I	GTNNAC	2 cut(s)	538, 791
HpyAV	CCTTC	5 cut(s)	230, 507, 666, 783, 865
HpyCH4III	ACNGT	2 cut(s)	430, 530
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	6 cut(s)	65, 230, 283, 506, 545, 710
HpyF3I	CTNAG	6 cut(s)	121, 192, 407, 633, 813, 962
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	244, 253, 487, 590
HspAI	GCGC	1 cut(s)	676
KpnI	GGTACC	1 cut(s)	765
Kzo9I	GATC	4 cut(s)	243, 728, 782, 922
LmnI	GCTCC	2 cut(s)	665, 833
Lsp1109I	GCAGC	2 cut(s)	175, 913
LweI	GCATC	2 cut(s)	74, 149
MaeI	CTAG	3 cut(s)	786, 824, 843
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	4 cut(s)	245, 730, 784, 924
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	4 cut(s)	243, 728, 782, 922
MboII	GAAGA	4 cut(s)	245, 311, 632, 932
MflI	RGATCY	3 cut(s)	728, 782, 922
MluCI	AATT	4 cut(s)	105, 412, 516, 647
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	198
MseI	TTAA	1 cut(s)	339
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	4 cut(s)	243, 728, 782, 922
NheI	GCTAGC	1 cut(s)	842
NlaIII	CATG	4 cut(s)	244, 253, 487, 590
NlaIV	GGNNCC	4 cut(s)	567, 627, 730, 763
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	2 cut(s)	253, 590
PceI	AGGCCT	1 cut(s)	577
PciI	ACATGT	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	84, 190, 903
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PscI	ACATGT	1 cut(s)	586
PsiI	TTATAA	2 cut(s)	110, 561
PspN4I	GGNNCC	4 cut(s)	567, 627, 730, 763
PspPI	GGNCC	1 cut(s)	625
PsuI	RGATCY	3 cut(s)	728, 782, 922
RsaI	GTAC	2 cut(s)	763, 956
RsaNI	GTAC	2 cut(s)	762, 955
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	83, 189, 902
Sau3AI	GATC	4 cut(s)	243, 728, 782, 922
Sau96I	GGNCC	1 cut(s)	625
ScaI	AGTACT	1 cut(s)	956
SchI	GAGTC	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	74, 149
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	4 cut(s)	105, 412, 516, 647
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	4 cut(s)	83, 133, 196, 765
SspMI	CTAG	3 cut(s)	786, 824, 843
StuI	AGGCCT	1 cut(s)	577
TaaI	ACNGT	2 cut(s)	430, 530
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	39, 52
TasI	AATT	4 cut(s)	105, 412, 516, 647
TatI	WGTACW	1 cut(s)	954
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	188, 901
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	777
XapI	RAATTY	2 cut(s)	412, 647
XceI	RCATGY	2 cut(s)	253, 590
XspI	CTAG	3 cut(s)	786, 824, 843
ZrmI	AGTACT	1 cut(s)	956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.