Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Forward (+)

8520482 .. 8525320

Gene Structure 4839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1062700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATTTTTATGGATACGGGTATCGTGGGACATCGTTTGAGCAGACATATCGATGTTACCCAGCATCTTTCATTGAAAAGCCACAAATTGAAAGTGGTGATAAAATTATAATGCCTCCCTCAGCCCTTGACCGTCTTGCATCTTTACACATTGATTATCCAATGTTGTTTGAGCTTCGAAATGATTCTGCTGACCGGGTCTCTCATTGTGGGGTGCTGGAGTTCATTGCAGAAGAAGGCATGATCTATATGCCATATTGGATGATGGAGAATATGCTCTTGCAAGAAGGTGATATTGTGCGAGTGAAAAATGCGACTCTTCCGAAGGGAACATATGTTAAATTACAACCCCATACAAAGGACTTTCTAGATATCTCAAATCCAAAAGCTATCTTGGAGACGACGCTGAGGAATTTTTCTTGCTTAACCACTGGGGACAGTATTATGGTAGCATACAACAACAAGAAGTATTATATAGATATTATAGAAACGAAGCCTTCTCATGCAATAACTATTATAGAGACAGACTGTGAGGTGGACTTTGCACCTCCGCTTGACTATAAGGAACCTGAAAGGCCTGCTGTCCCTCTAAATAAGGCAACTGCTCAAGTTGAAGAGGATCCTGCTGAGGCTGAACCTAAATTTAACCCTTTTACTGGATCTGGAAGACGCTTGGATGGAAAACCTTTGAAATATGAGCCAGCACCGGCTTCCTCAGGGTTTAAAGACAAGAAACCTGCAGTCACCAATGGAAATGCACAACCTTCTACAGGCTCTAGTTCACAAGCTACCAGTCGTCAGGCTCAGGGAAAACTTGTTTTTGGAGGAAATGCCAGTCGCAGTCCAAAGGAAACAAAAAAGGAAGCTGCAAAAGAGACTAAGAAAGAGAAGCAACCGGAAGTGAAAGAAGACCCGAAGTTCCAGCCTTTTACCGGGAAAAAGTACTCACTGAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

320

Amino Acids

35.72

Weight (kDa)

6.48

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	13 - 108	2.1e-41	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	109 - 184	2.5e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	745
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	3 cut(s)	614, 627, 667
AcsI	RAATTY	2 cut(s)	412, 641
AfaI	GTAC	1 cut(s)	944
AfiI	CCNNNNNNNGG	4 cut(s)	358, 656, 770, 932
AgsI	TTSAA	4 cut(s)	77, 92, 614, 691
AluBI	AGCT	4 cut(s)	175, 389, 788, 866
AluI	AGCT	4 cut(s)	175, 389, 788, 866
Alw26I	GTCTC	4 cut(s)	205, 392, 515, 869
AlwI	GGATC	3 cut(s)	614, 627, 667
AoxI	GGCC	1 cut(s)	575
ApeKI	GCWGC	1 cut(s)	866
ApoI	RAATTY	2 cut(s)	412, 641
Asp700I	GAANNNNTTC	1 cut(s)	184
AsuC2I	CCSGG	2 cut(s)	197, 934
AsuHPI	GGTGA	3 cut(s)	110, 302, 736
AsuII	TTCGAA	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	715
BamHI	GGATCC	1 cut(s)	619
BbsI	GAAGAC	2 cut(s)	673, 915
BbvCI	CCTCAGC	3 cut(s)	121, 407, 627
BbvI	GCAGC	1 cut(s)	853
BccI	CCATC	2 cut(s)	259, 671
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciVI	GTATCC	1 cut(s)	8
BcnI	CCSGG	2 cut(s)	197, 934
BcoDI	GTCTC	4 cut(s)	205, 392, 515, 869
BfaI	CTAG	2 cut(s)	368, 777
BfmI	CTRYAG	2 cut(s)	738, 768
BfuAI	ACCTGC	1 cut(s)	745
BfuI	GTATCC	1 cut(s)	8
BisI	GCNGC	1 cut(s)	867
BlsI	GCNGC	1 cut(s)	868
BmcAI	AGTACT	1 cut(s)	944
Bme1390I	CCNGG	2 cut(s)	197, 934
BmiI	GGNNCC	2 cut(s)	567, 621
BmrFI	CCNGG	2 cut(s)	197, 934
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	74, 149
BmuI	ACTGGG	1 cut(s)	441
BpiI	GAAGAC	2 cut(s)	673, 915
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	4 cut(s)	121, 407, 627, 804
Bpu14I	TTCGAA	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	591
BpuMI	CCSGG	2 cut(s)	197, 934
Bsa29I	ATCGAT	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	4 cut(s)	358, 656, 770, 932
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	4 cut(s)	436, 661, 792, 834
Bse21I	CCTNAGG	1 cut(s)	715
Bse3DI	GCAATG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	52
BseGI	GGATG	2 cut(s)	267, 682
BseLI	CCNNNNNNNGG	4 cut(s)	358, 656, 770, 932
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	6 cut(s)	135, 398, 618, 729, 818, 941
BseNI	ACTGG	4 cut(s)	436, 661, 792, 834
BseXI	GCAGC	1 cut(s)	853
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	1 cut(s)	577
BshVI	ATCGAT	1 cut(s)	52
BsiSI	CCGG	4 cut(s)	196, 707, 896, 933
BslFI	GGGAC	3 cut(s)	43, 449, 569
BslI	CCNNNNNNNGG	4 cut(s)	358, 656, 770, 932
BsmAI	GTCTC	4 cut(s)	205, 392, 515, 869
BsmBI	CGTCTC	1 cut(s)	392
BsmFI	GGGAC	3 cut(s)	43, 449, 569
BsnI	GGCC	1 cut(s)	577
Bso31I	GGTCTC	1 cut(s)	205
Bsp119I	TTCGAA	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	243, 619, 659
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	6 cut(s)	134, 399, 619, 728, 817, 942
BspDI	ATCGAT	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	567, 621
BspMAI	CTGCAG	1 cut(s)	742
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	3 cut(s)	614, 627, 667
BspT104I	TTCGAA	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	4 cut(s)	436, 661, 792, 834
BssAI	RCCGGY	1 cut(s)	706
BssMI	GATC	3 cut(s)	243, 619, 659
Bst4CI	ACNGT	3 cut(s)	134, 440, 530
Bst6I	CTCTTC	2 cut(s)	324, 609
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	579, 702
BstDEI	CTNAG	7 cut(s)	121, 407, 627, 715, 804, 879, 950
BstENI	CCTNNNNNAGG	1 cut(s)	768
BstF5I	GGATG	2 cut(s)	267, 682
BstKTI	GATC	3 cut(s)	246, 622, 662
BstMAI	GTCTC	4 cut(s)	205, 392, 515, 869
BstMBI	GATC	3 cut(s)	243, 619, 659
BstSCI	CCNGG	2 cut(s)	195, 932
BstSFI	CTRYAG	2 cut(s)	738, 768
BstV1I	GCAGC	1 cut(s)	853
BstV2I	GAAGAC	2 cut(s)	673, 915
BstX2I	RGATCY	2 cut(s)	619, 659
BstYI	RGATCY	2 cut(s)	619, 659
Bsu15I	ATCGAT	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	715
BsuI	GTATCC	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	577
BsuTUI	ATCGAT	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	267, 682
BtsIMutI	CAGTG	2 cut(s)	429, 947
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	2 cut(s)	579, 702
Cfr10I	RCCGGY	1 cut(s)	706
ClaI	ATCGAT	1 cut(s)	52
CseI	GACGC	2 cut(s)	412, 678
Csp6I	GTAC	1 cut(s)	943
CviAII	CATG	2 cut(s)	241, 503
CviQI	GTAC	1 cut(s)	943
DdeI	CTNAG	7 cut(s)	121, 407, 627, 715, 804, 879, 950
DpnI	GATC	3 cut(s)	245, 621, 661
DpnII	GATC	3 cut(s)	243, 619, 659
DraI	TTTAAA	1 cut(s)	724
Eam1104I	CTCTTC	2 cut(s)	324, 609
EarI	CTCTTC	2 cut(s)	324, 609
Eco147I	AGGCCT	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	715
EcoNI	CCTNNNNNAGG	1 cut(s)	768
EcoRV	GATATC	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	2 cut(s)	244, 506
FaqI	GGGAC	3 cut(s)	43, 449, 569
FatI	CATG	2 cut(s)	240, 502
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	867
FokI	GGATG	2 cut(s)	274, 689
Fsp4HI	GCNGC	1 cut(s)	867
FspBI	CTAG	2 cut(s)	368, 777
GluI	GCNGC	1 cut(s)	867
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	577
HapII	CCGG	4 cut(s)	196, 707, 896, 933
HgaI	GACGC	2 cut(s)	412, 678
Hin1II	CATG	2 cut(s)	244, 506
HinfI	GANTC	2 cut(s)	185, 316
HpaII	CCGG	4 cut(s)	196, 707, 896, 933
HphI	GGTGA	3 cut(s)	110, 302, 736
Hpy166II	GTNNAC	2 cut(s)	538, 782
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	2 cut(s)	368, 663
Hpy8I	GTNNAC	2 cut(s)	538, 782
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	5 cut(s)	230, 281, 319, 507, 774
HpyCH4III	ACNGT	3 cut(s)	134, 440, 530
HpyCH4V	TGCA	8 cut(s)	140, 230, 283, 506, 545, 740, 758, 869
HpyF3I	CTNAG	7 cut(s)	121, 407, 627, 715, 804, 879, 950
Hsp92II	CATG	2 cut(s)	244, 506
Kzo9I	GATC	3 cut(s)	243, 619, 659
Lsp1109I	GCAGC	1 cut(s)	853
LweI	GCATC	2 cut(s)	74, 149
MaeI	CTAG	2 cut(s)	368, 777
MaeIII	GTNAC	2 cut(s)	56, 742
MalI	GATC	3 cut(s)	245, 621, 661
MboI	GATC	3 cut(s)	243, 619, 659
MboII	GAAGA	5 cut(s)	245, 311, 626, 678, 920
MflI	RGATCY	2 cut(s)	619, 659
MluCI	AATT	5 cut(s)	87, 105, 341, 412, 641
MlyI	GAGTC	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	184
MseI	TTAA	4 cut(s)	339, 425, 645, 723
MslI	CAYNNNNRTG	1 cut(s)	52
MspI	CCGG	4 cut(s)	196, 707, 896, 933
MspR9I	CCNGG	2 cut(s)	197, 934
NciI	CCSGG	2 cut(s)	197, 934
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	3 cut(s)	243, 619, 659
NlaIII	CATG	2 cut(s)	244, 506
NlaIV	GGNNCC	2 cut(s)	567, 621
NmuCI	GTSAC	1 cut(s)	742
NspV	TTCGAA	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	868
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	567, 621
PstI	CTGCAG	1 cut(s)	742
PsuI	RGATCY	2 cut(s)	619, 659
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	944
RsaNI	GTAC	1 cut(s)	943
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	4 cut(s)	339, 425, 645, 723
SatI	GCNGC	1 cut(s)	867
Sau3AI	GATC	3 cut(s)	243, 619, 659
ScaI	AGTACT	1 cut(s)	944
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	197, 934
SfaNI	GCATC	2 cut(s)	74, 149
SfcI	CTRYAG	2 cut(s)	738, 768
SfuI	TTCGAA	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
Sse9I	AATT	5 cut(s)	87, 105, 341, 412, 641
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	2 cut(s)	368, 777
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	2 cut(s)	195, 932
TaaI	ACNGT	3 cut(s)	134, 440, 530
TaqI	TCGA	2 cut(s)	52, 178
TasI	AATT	5 cut(s)	87, 105, 341, 412, 641
TatI	WGTACW	1 cut(s)	942
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	4 cut(s)	339, 425, 645, 723
Tru9I	TTAA	4 cut(s)	339, 425, 645, 723
TscAI	CASTG	2 cut(s)	436, 954
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	1 cut(s)	866
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	2 cut(s)	61, 214
TspRI	CASTG	2 cut(s)	436, 954
Tth111I	GACNNNGTC	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	768
XapI	RAATTY	2 cut(s)	412, 641
XbaI	TCTAGA	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	2 cut(s)	368, 777
ZrmI	AGTACT	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.