Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Forward (+)

5412124 .. 5414776

Gene Structure 2653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04570.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTGTTTGAGCTTCGAAATGAATCTGTTGAACGGGTCTCTCATTGTGGGGTGCTGGAGTTCATTGCAGAAGAAGGCATGATCTATATGCCATATTGGATGATGGAGAATATGCTCTTGCAAGAAGGTGATATTGTGCGAGTGAAAAATGCAACTCTGCCGAAGGGAACATATGTTAAATTACAACCCCATACAAAGGACTTTCTAGATATCTCAAATCCAAAAGCTATCTTGGAGACGACGCTGAGGAATTTTTCTTGCTTAACCACTGGGGACAGTATTATGGTAGCATACAACAACAAGAAGTACTATATAGATATTATAGATGCGAAGCCTTCTCACGCAATAACTATTATTGAGACAGACTGTGAGGTAGACTTTGCACCTCCACTTGACTATAAGGAACCTGAAAAGCCAGCCGCATCTGGCCCTCTAAATAAGGCAACTGCTCAAGTTGAAGAGGATCCTGCTGATGCTGAACCTAAATTTAACCCTTTTACCGGATCTGGAAGACGCTTGGATGGGAAACCTTTGAAATATGAGCCAGCACCAGCTTCTTCCTCAGAGTCCAAAGACAAGAAACCTGCAGTCACCAATGGAAATGCACAACCTTCTATGGGATCTAGTTCACAAGCTACCAGTCGTCAGGCTCAGGGAAAACTTGTTTTTGGAGCAAATGCCAGTCGCTCTCCAAAGGAAACACAAAAGGAAGCTGCAAAAGAGACTAAGAAAGAGCAGCAGCCGGAAGCAAAAGAAGAGCCGAAGTTCCAGCCGTTTACCGGGAAAAAGTACTCGCTGAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

269

Amino Acids

29.71

Weight (kDa)

6.05

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	375
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	4 cut(s)	458, 471, 511, 628
AcsI	RAATTY	2 cut(s)	250, 485
AfaI	GTAC	2 cut(s)	308, 791
AfiI	CCNNNNNNNGG	4 cut(s)	196, 500, 617, 779
AgsI	TTSAA	3 cut(s)	32, 458, 535
AluBI	AGCT	5 cut(s)	13, 227, 554, 635, 713
AluI	AGCT	5 cut(s)	13, 227, 554, 635, 713
Alw26I	GTCTC	4 cut(s)	43, 230, 353, 716
AlwI	GGATC	4 cut(s)	458, 471, 511, 628
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	713, 736, 739
ApoI	RAATTY	2 cut(s)	250, 485
AspS9I	GGNCC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	781
AsuHPI	GGTGA	2 cut(s)	140, 583
AsuII	TTCGAA	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	517
BbvCI	CCTCAGC	2 cut(s)	245, 797
BbvI	GCAGC	3 cut(s)	700, 748, 751
BccI	CCATC	2 cut(s)	97, 515
BceAI	ACGGC	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	4 cut(s)	43, 230, 353, 716
BfaI	CTAG	2 cut(s)	206, 624
BfmI	CTRYAG	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	592
BisI	GCNGC	4 cut(s)	420, 714, 737, 740
BlsI	GCNGC	4 cut(s)	421, 715, 738, 741
BmcAI	AGTACT	2 cut(s)	308, 791
Bme1390I	CCNGG	1 cut(s)	781
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	405, 465
BmrFI	CCNGG	1 cut(s)	781
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	3 cut(s)	316, 431, 463
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	3 cut(s)	245, 651, 797
Bpu14I	TTCGAA	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	781
BsaI	GGTCTC	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 500, 617, 779
Bse1I	ACTGG	3 cut(s)	274, 639, 681
Bse3DI	GCAATG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	105, 526
BseLI	CCNNNNNNNGG	4 cut(s)	196, 500, 617, 779
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	4 cut(s)	236, 576, 665, 788
BseNI	ACTGG	3 cut(s)	274, 639, 681
BseXI	GCAGC	3 cut(s)	700, 748, 751
BshFI	GGCC	1 cut(s)	429
BsiSI	CCGG	3 cut(s)	501, 743, 780
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	4 cut(s)	196, 500, 617, 779
BsmAI	GTCTC	4 cut(s)	43, 230, 353, 716
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	429
Bso31I	GGTCTC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	81, 463, 503, 620
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	4 cut(s)	237, 575, 664, 789
BspLI	GGNNCC	2 cut(s)	405, 465
BspMAI	CTGCAG	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	592
BspPI	GGATC	4 cut(s)	458, 471, 511, 628
BspQI	GCTCTTC	1 cut(s)	750
BspT104I	TTCGAA	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	274, 639, 681
BssMI	GATC	4 cut(s)	81, 463, 503, 620
Bst4CI	ACNGT	2 cut(s)	278, 368
Bst6I	CTCTTC	2 cut(s)	453, 750
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	417, 546
BstDEI	CTNAG	5 cut(s)	245, 562, 651, 726, 797
BstF5I	GGATG	2 cut(s)	105, 526
BstKTI	GATC	4 cut(s)	84, 466, 506, 623
BstMAI	GTCTC	4 cut(s)	43, 230, 353, 716
BstMBI	GATC	4 cut(s)	81, 463, 503, 620
BstSCI	CCNGG	1 cut(s)	779
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	700, 748, 751
BstV2I	GAAGAC	1 cut(s)	517
BstX2I	RGATCY	3 cut(s)	463, 503, 620
BstYI	RGATCY	3 cut(s)	463, 503, 620
BsuRI	GGCC	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	105, 526
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	417, 546
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	2 cut(s)	250, 522
Csp6I	GTAC	2 cut(s)	307, 790
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	2 cut(s)	307, 790
DdeI	CTNAG	5 cut(s)	245, 562, 651, 726, 797
DpnI	GATC	4 cut(s)	83, 465, 505, 622
DpnII	GATC	4 cut(s)	81, 463, 503, 620
Eam1104I	CTCTTC	2 cut(s)	453, 750
EarI	CTCTTC	2 cut(s)	453, 750
Eco31I	GGTCTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	1 cut(s)	82
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	1 cut(s)	78
FauNDI	CATATG	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	4 cut(s)	420, 714, 737, 740
FokI	GGATG	2 cut(s)	112, 533
Fsp4HI	GCNGC	4 cut(s)	420, 714, 737, 740
FspBI	CTAG	2 cut(s)	206, 624
GluI	GCNGC	4 cut(s)	420, 714, 737, 740
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	3 cut(s)	501, 743, 780
HgaI	GACGC	2 cut(s)	250, 522
Hin1II	CATG	1 cut(s)	82
HinfI	GANTC	2 cut(s)	23, 566
HpaII	CCGG	3 cut(s)	501, 743, 780
HphI	GGTGA	2 cut(s)	140, 583
Hpy166II	GTNNAC	3 cut(s)	376, 629, 777
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	2 cut(s)	206, 507
Hpy8I	GTNNAC	3 cut(s)	376, 629, 777
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	5 cut(s)	68, 119, 157, 345, 621
HpyCH4III	ACNGT	2 cut(s)	278, 368
HpyCH4V	TGCA	7 cut(s)	68, 121, 152, 383, 587, 605, 716
HpyF3I	CTNAG	5 cut(s)	245, 562, 651, 726, 797
Hsp92II	CATG	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	81, 463, 503, 620
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	3 cut(s)	700, 748, 751
LweI	GCATC	3 cut(s)	316, 431, 463
MaeI	CTAG	2 cut(s)	206, 624
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	4 cut(s)	83, 465, 505, 622
MboI	GATC	4 cut(s)	81, 463, 503, 620
MboII	GAAGA	5 cut(s)	83, 470, 522, 549, 767
MflI	RGATCY	3 cut(s)	463, 503, 620
MluCI	AATT	3 cut(s)	179, 250, 485
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	7 cut(s)	240, 364, 396, 441, 454, 571, 792
MseI	TTAA	3 cut(s)	177, 263, 489
MspI	CCGG	3 cut(s)	501, 743, 780
MspR9I	CCNGG	1 cut(s)	781
NciI	CCSGG	1 cut(s)	781
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	4 cut(s)	81, 463, 503, 620
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	2 cut(s)	405, 465
NmuCI	GTSAC	1 cut(s)	589
NspV	TTCGAA	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	421, 715, 738, 741
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	405, 465
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	3 cut(s)	463, 503, 620
RsaI	GTAC	2 cut(s)	308, 791
RsaNI	GTAC	2 cut(s)	307, 790
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	3 cut(s)	177, 263, 489
SatI	GCNGC	4 cut(s)	420, 714, 737, 740
Sau3AI	GATC	4 cut(s)	81, 463, 503, 620
Sau96I	GGNCC	1 cut(s)	428
ScaI	AGTACT	2 cut(s)	308, 791
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	781
SfaNI	GCATC	3 cut(s)	316, 431, 463
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	3 cut(s)	179, 250, 485
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	2 cut(s)	206, 624
StyD4I	CCNGG	1 cut(s)	779
TaaI	ACNGT	2 cut(s)	278, 368
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	179, 250, 485
TatI	WGTACW	2 cut(s)	306, 789
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	177, 263, 489
Tru9I	TTAA	3 cut(s)	177, 263, 489
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	3 cut(s)	713, 736, 739
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	36, 52
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	2 cut(s)	250, 485
XbaI	TCTAGA	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	2 cut(s)	206, 624
ZrmI	AGTACT	2 cut(s)	308, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.